Optimized particlePool handling

BasicSolver/2D-seq/src/particletracing.c

@@ -133,14 +133,11 @@ void writeParticles(ParticleTracer* particletracer, Solver* solver)
     }
 
     for (int i = 0; i < particletracer->totalParticles; ++i)
-    {
-         if(particlePool[i].flag == true)
     {
         double x = particlePool[i].x;
         double y = particlePool[i].y;
         fprintf(fp, "%f %f\n", x, y);
     }
-    }
     fclose(fp);
 
     ++ts;
@@ -217,6 +214,28 @@ void trace(ParticleTracer* particletracer, Solver* solver, double* u, double* v,
 
         }
         advanceParticles(particletracer, u, v, time);
+        compress(particletracer);
         particletracer->lastUpdateTime = time;   
     }
 }
+
+void compress(ParticleTracer* particletracer)
+{
+    Particle* memPool = particletracer->particlePool;
+    Particle tempPool[particletracer->totalParticles];
+    int totalParticles = 0;
+
+    for(int i=0; i < particletracer->totalParticles; ++i)
+    {
+        if(memPool[i].flag == 1)
+        {
+            tempPool[totalParticles].x = memPool[i].x;
+            tempPool[totalParticles].y = memPool[i].y;
+            tempPool[totalParticles].flag = memPool[i].flag;
+            ++totalParticles;
+        }
+    }
+
+    particletracer->totalParticles = totalParticles;
+    memcpy(particletracer->particlePool, tempPool, totalParticles*sizeof(Particle));
+}

BasicSolver/2D-seq/src/particletracing.h

@@ -44,4 +44,5 @@ void writeParticles(ParticleTracer*, Solver*);
 void printParticleTracerParameters(ParticleTracer*);
 void printParticles(ParticleTracer*);
 void trace(ParticleTracer*, Solver*, double* , double* , double );
+void compress(ParticleTracer* );
 #endif

BasicSolver/2D-seq/src/vtkWriter.c

@@ -73,37 +73,27 @@ void vtkParticle(VtkOptions* o, char* name)
 
 
     for (int i = 0; i < o->particletracer->totalParticles; ++i)
-    {
-        if(particlePool[i].flag == true)
     {
         double x = particlePool[i].x;
         double y = particlePool[i].y;
         fprintf(o->fh, "%.2f %.2f 0.0\n", x, y);
     }
-    }
 
     fprintf(o->fh, "CELLS %d %d\n", o->particletracer->totalParticles, 2 * o->particletracer->totalParticles);
 
 
-    for (int i = 0, j = 0; i < o->particletracer->totalParticles; ++i)
+    for (int i = 0; i < o->particletracer->totalParticles; ++i)
     {
-        if(particlePool[i].flag == true)
-        {
-            fprintf(o->fh, "1 %d\n", j);
-            ++j;
-        }
+        fprintf(o->fh, "1 %d\n", i);
     }
 
     fprintf(o->fh, "CELL_TYPES %d\n", o->particletracer->totalParticles);
 
 
     for (int i = 0; i < o->particletracer->totalParticles; ++i)
-    {
-        if(particlePool[i].flag == true)
     {
         fprintf(o->fh, "1\n");
     }
-    }
 
     /*
     for (int k = 0; k < kmax; k++) {

BasicSolver/2D-seq/vis_files/animate.plot

@@ -1,8 +1,8 @@
 unset border; unset tics; unset key;
 set term gif animate delay 50
 set output "trace.gif"
-set xrange [0:1]
-set yrange [0:1]
+set xrange [0:30]
+set yrange [0:4]
 do for [ts=0:198] {
     plot "particles_".ts.".dat" with points pointtype 7
 }

BasicSolver/3D-seq/src/main.c

@@ -116,7 +116,7 @@ int main(int argc, char** argv)
         solver_generic[variant - 1](&s);
         adaptUV(&s);
 
-        trace(&particletracer, &s, s.u, s.v, s.w, t);
+        trace(&particletracer, s.u, s.v, s.w, t);
 
         t += s.dt;
         

BasicSolver/3D-seq/src/particletracing.c

@@ -177,7 +177,7 @@ void freeParticles(ParticleTracer* particletracer)
     free(particletracer->linSpaceLine);
 }
 
-void writeParticles(ParticleTracer* particletracer, Solver* solver)
+void writeParticles(ParticleTracer* particletracer)
 {
     VtkOptions opts = { .particletracer = particletracer };
 
@@ -256,7 +256,7 @@ void printParticleTracerParameters(ParticleTracer* particletracer)
     printf("\tdt : %.2f, dx : %.2f, dy : %.2f,  dz : %.2f\n", particletracer->dt, particletracer->dx, particletracer->dy, particletracer->dz);
 }   
 
-void trace(ParticleTracer* particletracer, Solver* solver, double* u, double* v, double* w, double time)
+void trace(ParticleTracer* particletracer, double* u, double* v, double* w, double time)
 {
     if (time >= particletracer->startTime)
     {
@@ -268,25 +268,34 @@ void trace(ParticleTracer* particletracer, Solver* solver, double* u, double* v,
         }
         if( (time - particletracer->lastWriteTime) >= particletracer->writeTimePeriod)
         {
-            activeParticleChecker(particletracer);
-            writeParticles(particletracer, solver);
+            writeParticles(particletracer);
             particletracer->lastWriteTime = time;
 
         }
         advanceParticles(particletracer, u, v, w, time);
+        compress(particletracer);
         particletracer->lastUpdateTime = time;   
     }
 }
 
-void activeParticleChecker(ParticleTracer* particletracer)
+void compress(ParticleTracer* particletracer)
 {
-    particletracer->activeParticles = 0;
-    Particle* particlePool = particletracer->particlePool;
-    for (int i = 0; i < particletracer->totalParticles; ++i)
+    Particle* memPool = particletracer->particlePool;
+    Particle tempPool[particletracer->totalParticles];
+    int totalParticles = 0;
+
+    for(int i=0; i < particletracer->totalParticles; ++i)
     {
-        if(particlePool[i].flag == true)
+        if(memPool[i].flag == 1)
         {
-            ++(particletracer->activeParticles);
+            tempPool[totalParticles].x = memPool[i].x;
+            tempPool[totalParticles].y = memPool[i].y;
+            tempPool[totalParticles].z = memPool[i].z;
+            tempPool[totalParticles].flag = memPool[i].flag;
+            ++totalParticles;
         }
     }
+
+    particletracer->totalParticles = totalParticles;
+    memcpy(particletracer->particlePool, tempPool, totalParticles*sizeof(Particle));
 }

BasicSolver/3D-seq/src/particletracing.h

@@ -40,9 +40,9 @@ void initParticleTracer(ParticleTracer*, Parameter*);
 void injectParticles(ParticleTracer*);
 void advanceParticles(ParticleTracer*, double* , double*, double*, double);
 void freeParticles(ParticleTracer*);
-void writeParticles(ParticleTracer*, Solver*);
+void writeParticles(ParticleTracer*);
 void printParticleTracerParameters(ParticleTracer*);
 void printParticles(ParticleTracer*);
-void activeParticleChecker(ParticleTracer*);
-void trace(ParticleTracer*, Solver*, double* , double* , double* , double);
+void compress(ParticleTracer*);
+void trace(ParticleTracer*, double* , double* , double* , double);
 #endif

BasicSolver/3D-seq/src/vtkWriter.c

@@ -172,32 +172,29 @@ void vtkParticle(VtkOptions* o, char* name)
         exit(EXIT_FAILURE);
     }
 
-    fprintf(o->fh, "POINTS %d float\n", o->particletracer->activeParticles);
+    fprintf(o->fh, "POINTS %d float\n", o->particletracer->totalParticles);
 
 
     for (int i = 0; i < o->particletracer->totalParticles; ++i)
-    {
-        if(particlePool[i].flag == true)
     {
             double x = particlePool[i].x;
             double y = particlePool[i].y;
             double z = particlePool[i].z;
             fprintf(o->fh, "%.2f %.2f %.2f\n", x, y, z);
     }
-    }
 
-    fprintf(o->fh, "CELLS %d %d\n", o->particletracer->activeParticles, 2 * o->particletracer->activeParticles);
+    fprintf(o->fh, "CELLS %d %d\n", o->particletracer->totalParticles, 2 * o->particletracer->totalParticles);
 
 
-    for (int i = 0; i < o->particletracer->activeParticles; ++i)
+    for (int i = 0; i < o->particletracer->totalParticles; ++i)
     {
         fprintf(o->fh, "1 %d\n", i);
     }
 
-    fprintf(o->fh, "CELL_TYPES %d\n", o->particletracer->activeParticles);
+    fprintf(o->fh, "CELL_TYPES %d\n", o->particletracer->totalParticles);
 
 
-    for (int i = 0; i < o->particletracer->activeParticles; ++i)
+    for (int i = 0; i < o->particletracer->totalParticles; ++i)
     {
         fprintf(o->fh, "1\n");
     }

BasicSolver/3D-seq/vtk_files/particles0.vtk

@@ -0,0 +1,12 @@
+# vtk DataFile Version 3.0
+PAMPI cfd solver particle tracing file
+ASCII
+DATASET UNSTRUCTURED_GRID
+FIELD FieldData 2
+TIME 1 1 double
+0
+CYCLE 1 1 int
+1
+POINTS 0 float
+CELLS 0 0
+CELL_TYPES 0

BasicSolver/3D-seq/vtk_files/particles1.vtk

@@ -0,0 +1,12 @@
+# vtk DataFile Version 3.0
+PAMPI cfd solver particle tracing file
+ASCII
+DATASET UNSTRUCTURED_GRID
+FIELD FieldData 2
+TIME 1 1 double
+1
+CYCLE 1 1 int
+1
+POINTS 0 float
+CELLS 0 0
+CELL_TYPES 0

BasicSolver/3D-seq/vtk_files/particles10.vtk

@@ -0,0 +1,282 @@
+# vtk DataFile Version 3.0
+PAMPI cfd solver particle tracing file
+ASCII
+DATASET UNSTRUCTURED_GRID
+FIELD FieldData 2
+TIME 1 1 double
+10
+CYCLE 1 1 int
+1
+POINTS 90 float
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BasicSolver/3D-seq/vtk_files/particles11.vtk

@@ -0,0 +1,372 @@
+# vtk DataFile Version 3.0
+PAMPI cfd solver particle tracing file
+ASCII
+DATASET UNSTRUCTURED_GRID
+FIELD FieldData 2
+TIME 1 1 double
+11
+CYCLE 1 1 int
+1
+POINTS 120 float
+0.36 0.70 0.99
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BasicSolver/3D-seq/vtk_files/particles12.vtk

@@ -0,0 +1,372 @@
+# vtk DataFile Version 3.0
+PAMPI cfd solver particle tracing file
+ASCII
+DATASET UNSTRUCTURED_GRID
+FIELD FieldData 2
+TIME 1 1 double
+12
+CYCLE 1 1 int
+1
+POINTS 120 float
+0.43 0.75 0.98
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BasicSolver/3D-seq/vtk_files/particles13.vtk

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BasicSolver/3D-seq/vtk_files/particles14.vtk

@@ -0,0 +1,462 @@
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BasicSolver/3D-seq/vtk_files/particles15.vtk

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+# vtk DataFile Version 3.0
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BasicSolver/3D-seq/vtk_files/particles16.vtk

@@ -0,0 +1,462 @@
+# vtk DataFile Version 3.0
+PAMPI cfd solver particle tracing file
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BasicSolver/3D-seq/vtk_files/particles17.vtk

@@ -0,0 +1,552 @@
+# vtk DataFile Version 3.0
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BasicSolver/3D-seq/vtk_files/particles18.vtk

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+# vtk DataFile Version 3.0
+PAMPI cfd solver particle tracing file
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BasicSolver/3D-seq/vtk_files/particles19.vtk

@@ -0,0 +1,552 @@
+# vtk DataFile Version 3.0
+PAMPI cfd solver particle tracing file
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+DATASET UNSTRUCTURED_GRID
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BasicSolver/3D-seq/vtk_files/particles2.vtk

@@ -0,0 +1,102 @@
+# vtk DataFile Version 3.0
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BasicSolver/3D-seq/vtk_files/particles20.vtk

@@ -0,0 +1,642 @@
+# vtk DataFile Version 3.0
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BasicSolver/3D-seq/vtk_files/particles21.vtk

@@ -0,0 +1,642 @@
+# vtk DataFile Version 3.0
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@@ -0,0 +1,642 @@
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BasicSolver/3D-seq/vtk_files/particles23.vtk

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BasicSolver/3D-seq/vtk_files/particles24.vtk

@@ -0,0 +1,732 @@
+# vtk DataFile Version 3.0
+PAMPI cfd solver particle tracing file
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BasicSolver/3D-seq/vtk_files/particles25.vtk

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BasicSolver/3D-seq/vtk_files/particles26.vtk

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+# vtk DataFile Version 3.0
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BasicSolver/3D-seq/vtk_files/particles27.vtk

@@ -0,0 +1,822 @@
+# vtk DataFile Version 3.0
+PAMPI cfd solver particle tracing file
+ASCII
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@@ -0,0 +1,822 @@
+# vtk DataFile Version 3.0
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BasicSolver/3D-seq/vtk_files/particles29.vtk

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BasicSolver/3D-seq/vtk_files/particles3.vtk

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+# vtk DataFile Version 3.0
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BasicSolver/3D-seq/vtk_files/particles30.vtk

@@ -0,0 +1,912 @@
+# vtk DataFile Version 3.0
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BasicSolver/3D-seq/vtk_files/particles31.vtk

@@ -0,0 +1,912 @@
+# vtk DataFile Version 3.0
+PAMPI cfd solver particle tracing file
+ASCII
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+FIELD FieldData 2
+TIME 1 1 double
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+CYCLE 1 1 int
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BasicSolver/3D-seq/vtk_files/particles4.vtk

@@ -0,0 +1,102 @@
+# vtk DataFile Version 3.0
+PAMPI cfd solver particle tracing file
+ASCII
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BasicSolver/3D-seq/vtk_files/particles5.vtk

@@ -0,0 +1,192 @@
+# vtk DataFile Version 3.0
+PAMPI cfd solver particle tracing file
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BasicSolver/3D-seq/vtk_files/particles6.vtk

@@ -0,0 +1,192 @@
+# vtk DataFile Version 3.0
+PAMPI cfd solver particle tracing file
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BasicSolver/3D-seq/vtk_files/particles7.vtk

@@ -0,0 +1,192 @@
+# vtk DataFile Version 3.0
+PAMPI cfd solver particle tracing file
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BasicSolver/3D-seq/vtk_files/particles8.vtk

@@ -0,0 +1,282 @@
+# vtk DataFile Version 3.0
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BasicSolver/3D-seq/vtk_files/particles9.vtk

@@ -0,0 +1,282 @@
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