moebiusband/MD-Bench
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity
193 Commits 8 Branches 0 Tags 3.4 MiB
C 88.8%
Cuda 8.4%
Makefile 2.8%
af1756bfe4
Go to file
Rafael Ravedutti af1756bfe4 Fix skin for Argon simulation 
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-04-04 22:22:35 +02:00
asm Add first version with more than one optimization scheme 2022-01-17 14:15:02 +01:00
data Fix skin for Argon simulation 2022-04-04 22:22:35 +02:00
gromacs Add option to check if cj is local before applying reaction force 2022-04-04 21:52:40 +02:00
lammps Add ONEAPI config. Remove omp simd for full neigh. 2022-04-01 15:57:54 +02:00
util
.gitignore Update .gitignore 2022-01-17 11:46:57 +01:00
config.mk Merge branch 'master' of github.com:RRZE-HPC/MD-Bench 2022-04-04 21:52:47 +02:00
include_CLANG.mk Update compilation flags for all available compilers 2022-01-17 11:40:44 +01:00
include_GCC.mk Update compilation flags for all available compilers 2022-01-17 11:40:44 +01:00
include_GROMACS.mk Add SIMD version with AVX (no AVX2) and XTC output 2022-03-02 23:12:04 +01:00
include_ICC.mk Add ONEAPI config. Remove omp simd for full neigh. 2022-04-01 15:57:54 +02:00
include_ISA.mk Add first compilable version of Gromacs with SP 2022-03-15 02:40:56 +01:00
include_LIKWID.mk
include_ONEAPI.mk Add ONEAPI config. Remove omp simd for full neigh. 2022-04-01 15:57:54 +02:00
LICENSE
Makefile Merge branch 'master' of github.com:RRZE-HPC/MD-Bench 2022-04-04 21:52:47 +02:00
README.md

README.md

MD-Bench

A simple, sequential C implementation of the Mantevo miniMD benchmark in less than 1000 LOC.

Build

  1. Open config.mk and edit the TAG value according to the tool chain used. Currently supported is GCC, CLANG (LLVM), and ICC (Intel).
  2. Change DATA_LAYOUT and DATA_TYPE if desired in config.mk.
  3. Open and adapt the compiler flags in <include_<TOOLCHAIN>.mk, e.g. in include_ICC.mk for the Intel tool chain.
  4. Build the binary calling make.

You can clean intermediate build results with make clean, and all build results with make distclean. You have to call make clean before make if you changed the build settings.

Configuration

Currently all settings apart from the options described below are hard-coded in main.c.

Run the benchmark

Without any options 200 steps with system size 32x32x32 is used.

The default can be changed using the following options:

-n / --nsteps <int>:  set number of timesteps for simulation
-nx/-ny/-nz <int>:    set linear dimension of systembox in x/y/z direction