A node agent for measuring, processing and forwarding node level metrics
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Thomas Gruber 6ab45dd3ec
Merge develop into main (#109)
* Add cpu_used (all-cpu_idle) to CpustatCollector

* Update to line-protocol/v2

* Update runonce.yml with Golang 1.20

* Update fsnotify in LIKWID Collector

* Use not a pointer to line-protocol.Encoder

* Simplify Makefile

* Use only as many arguments as required

* Allow sum function to handle non float types

* Allow values to be a slice of type float64, float32, int, int64, int32, bool

* Use generic function to simplify code

* Add missing case for type []int32

* Use generic function to compute minimum

* Use generic function to compute maximum

* Use generic function to compute average

* Add error value to sumAnyType

* Use generic function to compute median

* For older versions of go slices is not part of the installation

* Remove old entries from go.sum

* Use simpler sort function

* Compute metrics ib_total and ib_total_pkts

* Add aggregated metrics.
Add missing units

* Update likwidMetric.go

Fixes a potential bug when `fsnotify.NewWatcher()` fails with an error

* Completly avoid memory allocations in infinibandMetric read()

* Fixed initialization: Initalization and measurements should run in the same thread

* Add safe.directory to Release action

* Fix path after installation to /usr/bin after installation

* ioutil.ReadFile is deprecated: As of Go 1.16, this function simply calls os.ReadFile

* Switch to package slices from the golang 1.21 default library

* Read file line by line

* Read file line by line

* Read file line by line

* Use CamelCase

* Use CamelCase

* Fix function getNumaDomain, it always returned 0

* Avoid type conversion by using Atoi
Avoid copying structs by using pointer access
Increase readability with CamelCase variable names

* Add caching

* Cache CpuData

* Cleanup

* Use init function to initalize cache structure to avoid multi threading problems

* Reuse information from /proc/cpuinfo

* Avoid slice cloning. Directly use the cache

* Add DieList

* Add NumaDomainList and SMTList

* Cleanup

* Add comment

* Lookup core ID from /sys/devices/system/cpu, /proc/cpuinfo is not portable

* Lookup all information from /sys/devices/system/cpu, /proc/cpuinfo is not portable

* Correctly handle lists from /sys

* Add Simultaneous Multithreading siblings

* Replace deprecated thread_siblings_list by core_cpus_list

* Reduce number of required slices

* Allow to send total values per core, socket and node

* Send all metrics with same time stamp
calcEventsetMetrics does only computiation, counter measurement is done before

* Input parameters should be float64 when evaluating to float64

* Send all metrics with same time stamp
calcGlobalMetrics does only computiation, counter measurement is done before

* Remove unused variable gmresults

* Add comments

* Updated go packages

* Add build with golang 1.21

* Switch to checkout action version 4

* Switch to setup-go action version 4

* Add workflow_dispatch to allow manual run of workflow

* Add workflow_dispatch to allow manual run of workflow

* Add release build jobs to runonce.yml

* Switch to golang 1.20 for RHEL based distributions

* Use dnf to download golang

* Remove golang versions before 1.20

* Upgrade Ubuntu focal -> jammy

* Pipe golang tar package directly to tar

* Update golang version

* Fix Ubuntu version number

* Add links to ipmi and redfish receivers

* Fix http server addr format

* github.com/influxdata/line-protocol -> github.com/influxdata/line-protocol/v2/lineprotocol

* Corrected spelling

* Add some comments

* github.com/influxdata/line-protocol -> github.com/influxdata/line-protocol/v2/lineprotocol

* Allow other fields not only field "value"

* Add some basic debugging documentation

* Add some basic debugging documentation

* Use a lock for the flush timer

* Add tags in lexical order as required by AddTag()

* Only access meta data, when it gets used as tag

* Use slice to store lexialicly orderd key value pairs

* Increase golang version requirement to 1.20.

* Avoid package cmp to allow builds with golang v1.20

* Fix: Error NVML library not found did crash
cc-metric-collector with "SIGSEGV: segmentation violation"

* Add config option idle_timeout

* Add basic authentication support

* Add basic authentication support

* Avoid unneccessary memory allocations

* Add documentation for send_*_total values

* Use generic package maps to clone maps

* Reuse flush timer

* Add Influx client options

* Reuse ccTopology functionality

* Do not store unused topology information

* Add batch_size config

* Cleanup

* Use stype and stype-id for the NIC in NetstatCollector

* Wait for concurrent flush operations to finish

* Be more verbose in error messages

* Reverted previous changes.
Made the code to complex without much advantages

* Use line protocol encoder

* Go pkg update

* Stop flush timer, when immediatelly flushing

* Fix: Corrected unlock access to batch slice

* Add config option to specify whether to use GZip compression in influx write requests

* Add asynchron send of encoder metrics

* Use DefaultServeMux instead of github.com/gorilla/mux

* Add config option for HTTP keep-alives

* Be more strict, when parsing json

* Add config option for HTTP request timeout and Retry interval

* Allow more then one background send operation

* Fix %sysusers_create_package args (#108)

%sysusers_create_package requires two arguments. See: https://github.com/systemd/systemd/blob/main/src/rpm/macros.systemd.in#L165

* Add nfsiostat to list of collectors

---------

Co-authored-by: Holger Obermaier <40787752+ho-ob@users.noreply.github.com>
Co-authored-by: Holger Obermaier <holgerob@gmx.de>
Co-authored-by: Obihörnchen <obihoernchende@gmail.com>
2023-12-04 12:21:26 +01:00
.github Merge develop into main (#109) 2023-12-04 12:21:26 +01:00
collectors Merge develop into main (#109) 2023-12-04 12:21:26 +01:00
docs Add workflow to customize packages to docs 2022-12-14 16:50:49 +01:00
internal Merge develop into main (#109) 2023-12-04 12:21:26 +01:00
pkg Merge develop into main (#109) 2023-12-04 12:21:26 +01:00
receivers Merge develop into main (#109) 2023-12-04 12:21:26 +01:00
scripts Merge develop into main (#109) 2023-12-04 12:21:26 +01:00
sinks Merge develop into main (#109) 2023-12-04 12:21:26 +01:00
.gitignore Initial commit 2021-02-16 16:24:11 +01:00
.gitmodules Ganglia sink using libganglia.so directly (#35) 2022-02-16 18:33:46 +01:00
.zenodo.json Register cc-metric-collector at Zenodo (#93) 2022-12-14 16:53:44 +01:00
cc-metric-collector.go move maybe-usable-by-other-cc-components to pkg. Fix all files to use the new paths (#88) 2022-10-10 11:53:11 +02:00
collectors.json Add memstats and topprocs metric 2022-06-23 11:44:06 +02:00
config.json Use Golang duration parser for 'interval' and 'duration' 2022-05-13 12:33:33 +02:00
go.mod Merge develop into main (#109) 2023-12-04 12:21:26 +01:00
go.sum Merge develop into main (#109) 2023-12-04 12:21:26 +01:00
LICENSE Initial commit 2021-02-16 16:24:11 +01:00
Makefile Debian does not like underscores in the version 2022-12-20 13:35:21 +01:00
README.md Update README.md 2022-12-14 18:47:32 +01:00
receivers.json Use package hostlist to expand a host list 2022-12-01 09:48:34 +01:00
router.json Modularize the whole thing (#16) 2022-01-25 15:37:43 +01:00
sinks.json Adopt sinks.json for new meta_as_tags usage 2022-04-19 12:06:53 +02:00

cc-metric-collector

A node agent for measuring, processing and forwarding node level metrics. It is part of the ClusterCockpit ecosystem.

The metric collector sends (and receives) metric in the InfluxDB line protocol as it provides flexibility while providing a separation between tags (like index columns in relational databases) and fields (like data columns).

There is a single timer loop that triggers all collectors serially, collects the collectors' data and sends the metrics to the sink. This is done as all data is submitted with a single time stamp. The sinks currently use mostly blocking APIs.

The receiver runs as a go routine side-by-side with the timer loop and asynchronously forwards received metrics to the sink.

DOI

Configuration

Configuration is implemented using a single json document that is distributed over network and may be persisted as file. Supported metrics are documented here.

There is a main configuration file with basic settings that point to the other configuration files for the different components.

{
  "sinks": "sinks.json",
  "collectors" : "collectors.json",
  "receivers" : "receivers.json",
  "router" : "router.json",
  "interval": "10s",
  "duration": "1s"
}

The interval defines how often the metrics should be read and send to the sink. The duration tells collectors how long one measurement has to take. This is important for some collectors, like the likwid collector. For more information, see here.

See the component READMEs for their configuration:

Installation

$ git clone git@github.com:ClusterCockpit/cc-metric-collector.git
$ make (downloads LIKWID, builds it as static library with 'direct' accessmode and copies all required files for the collector)
$ go get (requires at least golang 1.16)
$ make

For more information, see here.

Running

$ ./cc-metric-collector --help
Usage of metric-collector:
  -config string
    	Path to configuration file (default "./config.json")
  -log string
    	Path for logfile (default "stderr")
  -once
    	Run all collectors only once

Scenarios

The metric collector was designed with flexibility in mind, so it can be used in many scenarios. Here are a few:

flowchart TD
  subgraph a ["Cluster A"]
  nodeA[NodeA with CC collector]
  nodeB[NodeB with CC collector]
  nodeC[NodeC with CC collector]
  end
  a --> db[(Database)]
  db <--> ccweb("Webfrontend")
flowchart TD
  subgraph a [ClusterA]
  direction LR
  nodeA[NodeA with CC collector]
  nodeB[NodeB with CC collector]
  nodeC[NodeC with CC collector]
  end
  subgraph b [ClusterB]
  direction LR
  nodeD[NodeD with CC collector]
  nodeE[NodeE with CC collector]
  nodeF[NodeF with CC collector]
  end
  a --> ccrecv{"CC collector as receiver"}
  b --> ccrecv
  ccrecv --> db[("Database1")]
  ccrecv -.-> db2[("Database2")]
  db <-.-> ccweb("Webfrontend")

Contributing

The ClusterCockpit ecosystem is designed to be used by different HPC computing centers. Since configurations and setups differ between the centers, the centers likely have to put some work into the cc-metric-collector to gather all desired metrics.

You are free to open an issue to request a collector but we would also be happy about PRs.

Contact