ClusterCockpit/cc-backend
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Small fixes. Start script to anonymize user infos.

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This commit is contained in:
Jan Eitzinger 2019-05-08 08:46:58 +02:00
parent ec62c8f004
commit e81afc84ab
2 changed files with 128 additions and 1 deletions
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1
acQuery.pl
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@ -191,7 +191,6 @@ sub printJobStat {
}
}
sub printJob {
my $job = shift;

128
anonDB.pl Executable file
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@ -0,0 +1,128 @@
#!/usr/bin/env perl
# =======================================================================================
#
# Author: Jan Eitzinger (je), jan.eitzinger@fau.de
# Copyright (c) 2019 RRZE, University Erlangen-Nuremberg
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in all
# copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
# SOFTWARE.
#
# =======================================================================================
use strict;
use warnings;
use utf8;
use File::Slurp;
use Data::Dumper;
use JSON::MaybeXS qw(encode_json decode_json);
use DBI;
my $database = $ARGV[0];
my $basedir = $ARGV[1];
my %attr = (
PrintError => 1,
RaiseError => 1
);
my $dbh = DBI->connect(
"DBI:SQLite:dbname=$database", "", "", \%attr)
or die "Could not connect to database: $DBI::errstr";
my $sth_select_all = $dbh->prepare(qq{
SELECT id, user_id, project_id
FROM job;
});
my $sth_select_job = $dbh->prepare(qq{
SELECT id, user_id, project_id
FROM job
WHERE job_id=?
});
my $sth_update_job = $dbh->prepare(qq{
UPDATE job
SET user_id = ?,
project_id = ?,
flops_any = ?,
mem_bw = ?
WHERE id=?;
});
my ($user_id, $num_nodes, $start_time, $stop_time, $queue, $duration, $db_id);
# build user lookup
$sth_select_all->execute;
my $user_index = 0; my $project_index = 0;
my %user_lookup; my %project_lookup;
my %row;
$sth_select_all->bind_columns( \( @row{ @{$sth->{NAME_lc} } } ));
while ($sth_select_all->fetch) {
print "$row{job_id}\n";
}
opendir my $dh, $basedir or die "can't open directory: $!";
while ( readdir $dh ) {
chomp;
next if $_ eq '.' or $_ eq '..';
my $jobID = $_;
my $needsUpdate = 0;
my $jobmeta_json = read_file("$basedir/$jobID/meta.json");
my $job = decode_json $jobmeta_json;
my @row = $dbh->selectrow_array($sth_select_job, undef, $jobID);
my ($db_id, $db_user_id, $db_job_id, $db_cluster_id, $db_start_time, $db_stop_time, $db_duration, $db_num_nodes);
# print Dumper($job);
if ( @row ) {
($db_id,
$db_user_id,
$db_job_id,
$db_cluster_id,
$db_start_time,
$db_stop_time,
$db_duration,
$db_num_nodes) = @row;
my $footprint = $job->{footprint};
# print "$footprint->{mem_used}->{avg}, $footprint->{flops_any}->{avg}, $footprint->{mem_bw}->{avg}\n";
$sth_update_job->execute(
1,
$footprint->{mem_used}->{avg},
$footprint->{flops_any}->{avg},
$footprint->{mem_bw}->{avg},
$db_id
);
$jobcount++;
} else {
print "$jobID NOT in DB!\n";
}
}
closedir $dh or die "can't close directory: $!";
$dbh->disconnect;
print "$wrongjobcount of $jobcount need update\n";