mirror of
https://github.com/ClusterCockpit/cc-backend
synced 2024-12-25 12:59:06 +01:00
feat: Add rest endpoint to add/edit Metadata entry
Add rest endpoint edit_meta including helper routines
This commit is contained in:
Jan Eitzinger
GitHub
commit
ce97780741
@ -327,6 +327,76 @@
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}
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}
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},
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"/jobs/edit_meta/{id}": {
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"post": {
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"security": [
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{
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"ApiKeyAuth": []
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}
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],
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"description": "Edit key value pairs in job metadata json\nIf a key already exists its content will be overwritten",
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"consumes": [
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"application/json"
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],
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"produces": [
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"application/json"
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],
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"tags": [
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"Job add and modify"
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],
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"summary": "Edit meta-data json",
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"parameters": [
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{
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"type": "integer",
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"description": "Job Database ID",
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"name": "id",
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"in": "path",
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"required": true
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},
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{
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"description": "Kay value pair to add",
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"name": "request",
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"in": "body",
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"required": true,
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"schema": {
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"$ref": "#/definitions/api.EditMetaRequest"
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}
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}
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],
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"responses": {
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"200": {
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"description": "Updated job resource",
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"schema": {
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"$ref": "#/definitions/schema.Job"
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}
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},
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"400": {
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"description": "Bad Request",
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"schema": {
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"$ref": "#/definitions/api.ErrorResponse"
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}
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},
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"401": {
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"description": "Unauthorized",
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"schema": {
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"$ref": "#/definitions/api.ErrorResponse"
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}
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},
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"404": {
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"description": "Job does not exist",
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"schema": {
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"$ref": "#/definitions/api.ErrorResponse"
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}
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},
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"500": {
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"description": "Internal Server Error",
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"schema": {
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"$ref": "#/definitions/api.ErrorResponse"
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}
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}
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}
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}
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},
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"/jobs/start_job/": {
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"post": {
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"security": [
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@ -1114,6 +1184,19 @@
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}
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}
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},
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"api.EditMetaRequest": {
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"type": "object",
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"properties": {
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"key": {
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"type": "string",
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"example": "jobScript"
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},
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"value": {
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"type": "string",
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"example": "bash script"
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}
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}
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},
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"api.ErrorResponse": {
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"type": "object",
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"properties": {
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@ -1252,6 +1335,10 @@
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"minimum": 0,
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"example": 1
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},
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"flopsAnyAvg": {
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"description": "FlopsAnyAvg as Float64",
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"type": "number"
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},
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"id": {
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"description": "The unique identifier of a job in the database",
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"type": "integer"
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@ -1278,6 +1365,18 @@
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],
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"example": "completed"
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},
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"loadAvg": {
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"description": "LoadAvg as Float64",
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"type": "number"
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},
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"memBwAvg": {
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"description": "MemBwAvg as Float64",
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"type": "number"
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},
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"memUsedMax": {
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"description": "MemUsedMax as Float64",
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"type": "number"
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},
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"metaData": {
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"description": "Additional information about the job",
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"type": "object",
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@ -50,6 +50,15 @@ definitions:
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msg:
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type: string
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type: object
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api.EditMetaRequest:
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properties:
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key:
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example: jobScript
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type: string
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value:
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example: bash script
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type: string
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type: object
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api.ErrorResponse:
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properties:
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error:
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@ -150,6 +159,9 @@ definitions:
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maximum: 2
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minimum: 0
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type: integer
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flopsAnyAvg:
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description: FlopsAnyAvg as Float64
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type: number
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id:
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description: The unique identifier of a job in the database
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type: integer
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@ -169,6 +181,15 @@ definitions:
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- timeout
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- out_of_memory
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example: completed
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loadAvg:
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description: LoadAvg as Float64
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type: number
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memBwAvg:
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description: MemBwAvg as Float64
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type: number
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memUsedMax:
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description: MemUsedMax as Float64
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type: number
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metaData:
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additionalProperties:
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type: string
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@ -810,6 +831,53 @@ paths:
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summary: Remove a job from the sql database
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tags:
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- Job remove
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/jobs/edit_meta/{id}:
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post:
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consumes:
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- application/json
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description: |-
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Edit key value pairs in job metadata json
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If a key already exists its content will be overwritten
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parameters:
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- description: Job Database ID
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in: path
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name: id
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required: true
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type: integer
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- description: Kay value pair to add
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in: body
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name: request
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required: true
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schema:
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$ref: '#/definitions/api.EditMetaRequest'
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produces:
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- application/json
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responses:
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"200":
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description: Updated job resource
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schema:
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$ref: '#/definitions/schema.Job'
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"400":
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description: Bad Request
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schema:
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$ref: '#/definitions/api.ErrorResponse'
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"401":
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description: Unauthorized
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schema:
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$ref: '#/definitions/api.ErrorResponse'
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"404":
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description: Job does not exist
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schema:
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$ref: '#/definitions/api.ErrorResponse'
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"500":
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description: Internal Server Error
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schema:
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$ref: '#/definitions/api.ErrorResponse'
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security:
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- ApiKeyAuth: []
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summary: Edit meta-data json
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tags:
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- Job add and modify
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/jobs/start_job/:
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post:
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consumes:
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@ -1,5 +1,4 @@
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// Code generated by swaggo/swag. DO NOT EDIT.
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// Package api Code generated by swaggo/swag. DO NOT EDIT
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package api
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import "github.com/swaggo/swag"
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@ -334,6 +333,76 @@ const docTemplate = `{
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}
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}
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},
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"/jobs/edit_meta/{id}": {
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"post": {
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"security": [
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{
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"ApiKeyAuth": []
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}
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],
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"description": "Edit key value pairs in job metadata json\nIf a key already exists its content will be overwritten",
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"consumes": [
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"application/json"
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],
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"produces": [
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"application/json"
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],
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"tags": [
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"Job add and modify"
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],
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"summary": "Edit meta-data json",
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"parameters": [
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{
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"type": "integer",
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"description": "Job Database ID",
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"name": "id",
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"in": "path",
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"required": true
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},
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{
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"description": "Kay value pair to add",
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"name": "request",
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"in": "body",
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"required": true,
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"schema": {
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"$ref": "#/definitions/api.EditMetaRequest"
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}
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}
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],
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"responses": {
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"200": {
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"description": "Updated job resource",
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"schema": {
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"$ref": "#/definitions/schema.Job"
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}
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},
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"400": {
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"description": "Bad Request",
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"schema": {
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"$ref": "#/definitions/api.ErrorResponse"
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}
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},
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"401": {
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"description": "Unauthorized",
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"schema": {
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"$ref": "#/definitions/api.ErrorResponse"
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}
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},
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"404": {
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"description": "Job does not exist",
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"schema": {
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"$ref": "#/definitions/api.ErrorResponse"
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}
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},
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"500": {
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"description": "Internal Server Error",
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"schema": {
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"$ref": "#/definitions/api.ErrorResponse"
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}
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}
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}
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}
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},
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"/jobs/start_job/": {
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"post": {
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"security": [
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@ -1121,6 +1190,19 @@ const docTemplate = `{
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}
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}
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},
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"api.EditMetaRequest": {
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"type": "object",
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"properties": {
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"key": {
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"type": "string",
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"example": "jobScript"
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},
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"value": {
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"type": "string",
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"example": "bash script"
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}
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}
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},
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"api.ErrorResponse": {
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"type": "object",
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"properties": {
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@ -1259,6 +1341,10 @@ const docTemplate = `{
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"minimum": 0,
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"example": 1
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},
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"flopsAnyAvg": {
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"description": "FlopsAnyAvg as Float64",
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"type": "number"
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},
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"id": {
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"description": "The unique identifier of a job in the database",
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"type": "integer"
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@ -1285,6 +1371,18 @@ const docTemplate = `{
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],
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"example": "completed"
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},
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"loadAvg": {
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"description": "LoadAvg as Float64",
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"type": "number"
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},
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"memBwAvg": {
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"description": "MemBwAvg as Float64",
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"type": "number"
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},
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"memUsedMax": {
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"description": "MemUsedMax as Float64",
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"type": "number"
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},
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"metaData": {
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"description": "Additional information about the job",
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"type": "object",
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@ -71,6 +71,7 @@ func (api *RestApi) MountRoutes(r *mux.Router) {
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r.HandleFunc("/jobs/", api.getJobs).Methods(http.MethodGet)
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r.HandleFunc("/jobs/{id}", api.getJobById).Methods(http.MethodPost)
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r.HandleFunc("/jobs/tag_job/{id}", api.tagJob).Methods(http.MethodPost, http.MethodPatch)
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r.HandleFunc("/jobs/edit_meta/{id}", api.editMeta).Methods(http.MethodPost, http.MethodPatch)
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r.HandleFunc("/jobs/metrics/{id}", api.getJobMetrics).Methods(http.MethodGet)
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r.HandleFunc("/jobs/delete_job/", api.deleteJobByRequest).Methods(http.MethodDelete)
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r.HandleFunc("/jobs/delete_job/{id}", api.deleteJobById).Methods(http.MethodDelete)
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@ -146,6 +147,12 @@ type ApiTag struct {
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Name string `json:"name" example:"Testjob"` // Tag Name
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}
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// ApiMeta model
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type EditMetaRequest struct {
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Key string `json:"key" example:"jobScript"`
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Value string `json:"value" example:"bash script"`
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}
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type TagJobApiRequest []*ApiTag
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type GetJobApiRequest []string
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@ -243,7 +250,6 @@ func securedCheck(r *http.Request) error {
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// @security ApiKeyAuth
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// @router /jobs/ [get]
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func (api *RestApi) getJobs(rw http.ResponseWriter, r *http.Request) {
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if user := repository.GetUserFromContext(r.Context()); user != nil &&
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!user.HasRole(schema.RoleApi) {
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@ -464,6 +470,57 @@ func (api *RestApi) getJobById(rw http.ResponseWriter, r *http.Request) {
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}
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}
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// editMeta godoc
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// @summary Edit meta-data json
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// @tags Job add and modify
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// @description Edit key value pairs in job metadata json
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// @description If a key already exists its content will be overwritten
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// @accept json
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// @produce json
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// @param id path int true "Job Database ID"
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// @param request body api.EditMetaRequest true "Kay value pair to add"
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// @success 200 {object} schema.Job "Updated job resource"
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// @failure 400 {object} api.ErrorResponse "Bad Request"
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// @failure 401 {object} api.ErrorResponse "Unauthorized"
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// @failure 404 {object} api.ErrorResponse "Job does not exist"
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// @failure 500 {object} api.ErrorResponse "Internal Server Error"
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// @security ApiKeyAuth
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// @router /jobs/edit_meta/{id} [post]
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func (api *RestApi) editMeta(rw http.ResponseWriter, r *http.Request) {
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if user := repository.GetUserFromContext(r.Context()); user != nil &&
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!user.HasRole(schema.RoleApi) {
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handleError(fmt.Errorf("missing role: %v", schema.GetRoleString(schema.RoleApi)), http.StatusForbidden, rw)
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return
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}
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iid, err := strconv.ParseInt(mux.Vars(r)["id"], 10, 64)
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if err != nil {
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http.Error(rw, err.Error(), http.StatusBadRequest)
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return
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}
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job, err := api.JobRepository.FindById(iid)
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if err != nil {
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http.Error(rw, err.Error(), http.StatusNotFound)
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return
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}
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var req EditMetaRequest
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if err := decode(r.Body, &req); err != nil {
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http.Error(rw, err.Error(), http.StatusBadRequest)
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return
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}
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if err := api.JobRepository.UpdateMetadata(job, req.Key, req.Value); err != nil {
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http.Error(rw, err.Error(), http.StatusInternalServerError)
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return
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}
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rw.Header().Add("Content-Type", "application/json")
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rw.WriteHeader(http.StatusOK)
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json.NewEncoder(rw).Encode(job)
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}
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// tagJob godoc
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// @summary Adds one or more tags to a job
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// @tags Job add and modify
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@ -873,7 +930,6 @@ func (api *RestApi) deleteJobBefore(rw http.ResponseWriter, r *http.Request) {
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}
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func (api *RestApi) checkAndHandleStopJob(rw http.ResponseWriter, job *schema.Job, req StopJobApiRequest) {
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// Sanity checks
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if job == nil || job.StartTime.Unix() >= req.StopTime || job.State != schema.JobStateRunning {
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handleError(errors.New("stopTime must be larger than startTime and only running jobs can be stopped"), http.StatusBadRequest, rw)
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@ -1015,7 +1071,8 @@ func (api *RestApi) createUser(rw http.ResponseWriter, r *http.Request) {
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Password: password,
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Email: email,
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Projects: []string{project},
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Roles: []string{role}}); err != nil {
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Roles: []string{role},
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}); err != nil {
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http.Error(rw, err.Error(), http.StatusUnprocessableEntity)
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return
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}
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@ -16,6 +16,7 @@ import (
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"github.com/ClusterCockpit/cc-backend/internal/graph/model"
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"github.com/ClusterCockpit/cc-backend/internal/metricdata"
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"github.com/ClusterCockpit/cc-backend/pkg/archive"
|
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"github.com/ClusterCockpit/cc-backend/pkg/log"
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"github.com/ClusterCockpit/cc-backend/pkg/lrucache"
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"github.com/ClusterCockpit/cc-backend/pkg/schema"
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@ -212,7 +213,7 @@ func (r *JobRepository) UpdateMetadata(job *schema.Job, key, val string) (err er
|
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}
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r.cache.Put(cachekey, job.MetaData, len(job.RawMetaData), 24*time.Hour)
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return nil
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return archive.UpdateMetadata(job, job.MetaData)
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}
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// Find executes a SQL query to find a specific batch job.
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@ -223,8 +224,8 @@ func (r *JobRepository) UpdateMetadata(job *schema.Job, key, val string) (err er
|
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func (r *JobRepository) Find(
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jobId *int64,
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cluster *string,
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startTime *int64) (*schema.Job, error) {
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startTime *int64,
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) (*schema.Job, error) {
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start := time.Now()
|
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q := sq.Select(jobColumns...).From("job").
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Where("job.job_id = ?", *jobId)
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@ -248,8 +249,8 @@ func (r *JobRepository) Find(
|
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func (r *JobRepository) FindAll(
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jobId *int64,
|
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cluster *string,
|
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startTime *int64) ([]*schema.Job, error) {
|
||||
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startTime *int64,
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) ([]*schema.Job, error) {
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start := time.Now()
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q := sq.Select(jobColumns...).From("job").
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Where("job.job_id = ?", *jobId)
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@ -292,7 +293,8 @@ func (r *JobRepository) FindById(jobId int64) (*schema.Job, error) {
|
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|
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func (r *JobRepository) FindConcurrentJobs(
|
||||
ctx context.Context,
|
||||
job *schema.Job) (*model.JobLinkResultList, error) {
|
||||
job *schema.Job,
|
||||
) (*model.JobLinkResultList, error) {
|
||||
if job == nil {
|
||||
return nil, nil
|
||||
}
|
||||
@ -420,8 +422,8 @@ func (r *JobRepository) Stop(
|
||||
jobId int64,
|
||||
duration int32,
|
||||
state schema.JobState,
|
||||
monitoringStatus int32) (err error) {
|
||||
|
||||
monitoringStatus int32,
|
||||
) (err error) {
|
||||
stmt := sq.Update("job").
|
||||
Set("job_state", state).
|
||||
Set("duration", duration).
|
||||
@ -435,7 +437,7 @@ func (r *JobRepository) Stop(
|
||||
func (r *JobRepository) DeleteJobsBefore(startTime int64) (int, error) {
|
||||
var cnt int
|
||||
qs := fmt.Sprintf("SELECT count(*) FROM job WHERE job.start_time < %d", startTime)
|
||||
err := r.DB.Get(&cnt, qs) //ignore error as it will also occur in delete statement
|
||||
err := r.DB.Get(&cnt, qs) // ignore error as it will also occur in delete statement
|
||||
_, err = r.DB.Exec(`DELETE FROM job WHERE job.start_time < ?`, startTime)
|
||||
if err != nil {
|
||||
log.Errorf(" DeleteJobsBefore(%d): error %#v", startTime, err)
|
||||
@ -468,8 +470,8 @@ func (r *JobRepository) UpdateMonitoringStatus(job int64, monitoringStatus int32
|
||||
func (r *JobRepository) MarkArchived(
|
||||
jobId int64,
|
||||
monitoringStatus int32,
|
||||
metricStats map[string]schema.JobStatistics) error {
|
||||
|
||||
metricStats map[string]schema.JobStatistics,
|
||||
) error {
|
||||
stmt := sq.Update("job").
|
||||
Set("monitoring_status", monitoringStatus).
|
||||
Where("job.id = ?", jobId)
|
||||
@ -578,8 +580,10 @@ func (r *JobRepository) FindUserOrProjectOrJobname(user *schema.User, searchterm
|
||||
}
|
||||
}
|
||||
|
||||
var ErrNotFound = errors.New("no such jobname, project or user")
|
||||
var ErrForbidden = errors.New("not authorized")
|
||||
var (
|
||||
ErrNotFound = errors.New("no such jobname, project or user")
|
||||
ErrForbidden = errors.New("not authorized")
|
||||
)
|
||||
|
||||
func (r *JobRepository) FindColumnValue(user *schema.User, searchterm string, table string, selectColumn string, whereColumn string, isLike bool) (result string, err error) {
|
||||
compareStr := " = ?"
|
||||
@ -663,7 +667,6 @@ func (r *JobRepository) Partitions(cluster string) ([]string, error) {
|
||||
// AllocatedNodes returns a map of all subclusters to a map of hostnames to the amount of jobs running on that host.
|
||||
// Hosts with zero jobs running on them will not show up!
|
||||
func (r *JobRepository) AllocatedNodes(cluster string) (map[string]map[string]int, error) {
|
||||
|
||||
start := time.Now()
|
||||
subclusters := make(map[string]map[string]int)
|
||||
rows, err := sq.Select("resources", "subcluster").From("job").
|
||||
@ -706,7 +709,6 @@ func (r *JobRepository) AllocatedNodes(cluster string) (map[string]map[string]in
|
||||
}
|
||||
|
||||
func (r *JobRepository) StopJobsExceedingWalltimeBy(seconds int) error {
|
||||
|
||||
start := time.Now()
|
||||
res, err := sq.Update("job").
|
||||
Set("monitoring_status", schema.MonitoringStatusArchivingFailed).
|
||||
@ -735,7 +737,6 @@ func (r *JobRepository) StopJobsExceedingWalltimeBy(seconds int) error {
|
||||
}
|
||||
|
||||
func (r *JobRepository) FindJobsBetween(startTimeBegin int64, startTimeEnd int64) ([]*schema.Job, error) {
|
||||
|
||||
var query sq.SelectBuilder
|
||||
|
||||
if startTimeBegin == startTimeEnd || startTimeBegin > startTimeEnd {
|
||||
|
||||
@ -52,9 +52,11 @@ type JobContainer struct {
|
||||
Data *schema.JobData
|
||||
}
|
||||
|
||||
var cache *lrucache.Cache = lrucache.New(128 * 1024 * 1024)
|
||||
var ar ArchiveBackend
|
||||
var useArchive bool
|
||||
var (
|
||||
cache *lrucache.Cache = lrucache.New(128 * 1024 * 1024)
|
||||
ar ArchiveBackend
|
||||
useArchive bool
|
||||
)
|
||||
|
||||
func Init(rawConfig json.RawMessage, disableArchive bool) error {
|
||||
useArchive = !disableArchive
|
||||
@ -95,8 +97,8 @@ func GetHandle() ArchiveBackend {
|
||||
func LoadAveragesFromArchive(
|
||||
job *schema.Job,
|
||||
metrics []string,
|
||||
data [][]schema.Float) error {
|
||||
|
||||
data [][]schema.Float,
|
||||
) error {
|
||||
metaFile, err := ar.LoadJobMeta(job)
|
||||
if err != nil {
|
||||
log.Warn("Error while loading job metadata from archiveBackend")
|
||||
@ -115,7 +117,6 @@ func LoadAveragesFromArchive(
|
||||
}
|
||||
|
||||
func GetStatistics(job *schema.Job) (map[string]schema.JobStatistics, error) {
|
||||
|
||||
metaFile, err := ar.LoadJobMeta(job)
|
||||
if err != nil {
|
||||
log.Warn("Error while loading job metadata from archiveBackend")
|
||||
@ -125,10 +126,29 @@ func GetStatistics(job *schema.Job) (map[string]schema.JobStatistics, error) {
|
||||
return metaFile.Statistics, nil
|
||||
}
|
||||
|
||||
// If the job is archived, find its `meta.json` file and override the Metadata
|
||||
// in that JSON file. If the job is not archived, nothing is done.
|
||||
func UpdateMetadata(job *schema.Job, metadata map[string]string) error {
|
||||
if job.State == schema.JobStateRunning || !useArchive {
|
||||
return nil
|
||||
}
|
||||
|
||||
jobMeta, err := ar.LoadJobMeta(job)
|
||||
if err != nil {
|
||||
log.Warn("Error while loading job metadata from archiveBackend")
|
||||
return err
|
||||
}
|
||||
|
||||
for k, v := range metadata {
|
||||
jobMeta.MetaData[k] = v
|
||||
}
|
||||
|
||||
return ar.StoreJobMeta(jobMeta)
|
||||
}
|
||||
|
||||
// If the job is archived, find its `meta.json` file and override the tags list
|
||||
// in that JSON file. If the job is not archived, nothing is done.
|
||||
func UpdateTags(job *schema.Job, tags []*schema.Tag) error {
|
||||
|
||||
if job.State == schema.JobStateRunning || !useArchive {
|
||||
return nil
|
||||
}
|
||||
|
||||
Loading…
Reference in New Issue
Block a user