mirror of
https://github.com/ClusterCockpit/cc-backend
synced 2024-12-25 12:59:06 +01:00
Fix issues in conversion tool
This commit is contained in:
Jan Eitzinger
parent
70b39730d2
commit
8dc9e6ecdd
@ -39,7 +39,7 @@ var MeasuresMap map[Measure]MeasureData = map[Measure]MeasureData{
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},
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Flops: {
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Long: "Flops",
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Short: "Flops",
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Short: "F",
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Regex: "^([fF][lL]?[oO]?[pP]?[sS]?)",
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},
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Percentage: {
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@ -5,6 +5,8 @@ import (
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"fmt"
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"math"
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"strings"
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"github.com/ClusterCockpit/cc-backend/pkg/schema"
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)
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type unit struct {
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@ -131,6 +133,32 @@ func NormalizeSeries(s []float64, avg float64, us string, nu *string) {
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*nu = u.Short()
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}
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func ConvertUnitString(us string) schema.Unit {
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var nu schema.Unit
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if us == "CPI" ||
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us == "IPC" ||
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us == "load" ||
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us == "" {
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nu.Base = us
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return nu
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}
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u := NewUnit(us)
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p := u.getPrefix()
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if p.Prefix() != "" {
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nu.Prefix = p.Prefix()
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}
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m := u.getMeasure()
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d := u.getUnitDenominator()
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if d.Short() != "inval" {
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nu.Base = fmt.Sprintf("%s/%s", m.Short(), d.Short())
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} else {
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nu.Base = m.Short()
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}
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return nu
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}
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// GetPrefixPrefixFactor creates the default conversion function between two prefixes.
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// It returns a conversation function for the value.
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func GetPrefixPrefixFactor(in Prefix, out Prefix) func(value interface{}) interface{} {
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@ -4,171 +4,62 @@
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// license that can be found in the LICENSE file.
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package main
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import "strconv"
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import (
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"github.com/ClusterCockpit/cc-backend/pkg/schema"
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)
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type Accelerator struct {
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ID string `json:"id"`
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Type string `json:"type"`
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Model string `json:"model"`
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}
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// type Accelerator struct {
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// ID string `json:"id"`
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// Type string `json:"type"`
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// Model string `json:"model"`
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// }
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type Topology struct {
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Node []int `json:"node"`
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Socket [][]int `json:"socket"`
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MemoryDomain [][]int `json:"memoryDomain"`
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Die [][]int `json:"die"`
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Core [][]int `json:"core"`
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Accelerators []*Accelerator `json:"accelerators"`
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}
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// type Topology struct {
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// Node []int `json:"node"`
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// Socket [][]int `json:"socket"`
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// MemoryDomain [][]int `json:"memoryDomain"`
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// Die [][]int `json:"die"`
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// Core [][]int `json:"core"`
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// Accelerators []*Accelerator `json:"accelerators"`
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// }
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type SubCluster struct {
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Name string `json:"name"`
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Nodes string `json:"nodes"`
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NumberOfNodes int `json:"numberOfNodes"`
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ProcessorType string `json:"processorType"`
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SocketsPerNode int `json:"socketsPerNode"`
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CoresPerSocket int `json:"coresPerSocket"`
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ThreadsPerCore int `json:"threadsPerCore"`
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FlopRateScalar int `json:"flopRateScalar"`
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FlopRateSimd int `json:"flopRateSimd"`
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MemoryBandwidth int `json:"memoryBandwidth"`
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Topology *Topology `json:"topology"`
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}
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// type SubCluster struct {
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// Name string `json:"name"`
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// Nodes string `json:"nodes"`
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// NumberOfNodes int `json:"numberOfNodes"`
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// ProcessorType string `json:"processorType"`
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// SocketsPerNode int `json:"socketsPerNode"`
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// CoresPerSocket int `json:"coresPerSocket"`
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// ThreadsPerCore int `json:"threadsPerCore"`
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// FlopRateScalar int `json:"flopRateScalar"`
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// FlopRateSimd int `json:"flopRateSimd"`
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// MemoryBandwidth int `json:"memoryBandwidth"`
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// Topology *Topology `json:"topology"`
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// }
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type SubClusterConfig struct {
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Name string `json:"name"`
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Peak float64 `json:"peak"`
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Normal float64 `json:"normal"`
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Caution float64 `json:"caution"`
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Alert float64 `json:"alert"`
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}
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// type SubClusterConfig struct {
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// Name string `json:"name"`
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// Peak float64 `json:"peak"`
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// Normal float64 `json:"normal"`
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// Caution float64 `json:"caution"`
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// Alert float64 `json:"alert"`
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// }
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type MetricConfig struct {
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Name string `json:"name"`
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Unit string `json:"unit"`
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Scope MetricScope `json:"scope"`
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Aggregation *string `json:"aggregation"`
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Timestep int `json:"timestep"`
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Peak *float64 `json:"peak"`
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Normal *float64 `json:"normal"`
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Caution *float64 `json:"caution"`
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Alert *float64 `json:"alert"`
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SubClusters []*SubClusterConfig `json:"subClusters"`
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Name string `json:"name"`
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Unit string `json:"unit"`
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Scope schema.MetricScope `json:"scope"`
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Aggregation *string `json:"aggregation"`
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Timestep int `json:"timestep"`
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Peak *float64 `json:"peak"`
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Normal *float64 `json:"normal"`
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Caution *float64 `json:"caution"`
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Alert *float64 `json:"alert"`
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SubClusters []*schema.SubClusterConfig `json:"subClusters"`
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}
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type Cluster struct {
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Name string `json:"name"`
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MetricConfig []*MetricConfig `json:"metricConfig"`
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SubClusters []*SubCluster `json:"subClusters"`
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}
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// Return a list of socket IDs given a list of hwthread IDs. Even if just one
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// hwthread is in that socket, add it to the list. If no hwthreads other than
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// those in the argument list are assigned to one of the sockets in the first
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// return value, return true as the second value. TODO: Optimize this, there
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// must be a more efficient way/algorithm.
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func (topo *Topology) GetSocketsFromHWThreads(
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hwthreads []int) (sockets []int, exclusive bool) {
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socketsMap := map[int]int{}
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for _, hwthread := range hwthreads {
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for socket, hwthreadsInSocket := range topo.Socket {
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for _, hwthreadInSocket := range hwthreadsInSocket {
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if hwthread == hwthreadInSocket {
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socketsMap[socket] += 1
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}
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}
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}
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}
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exclusive = true
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hwthreadsPerSocket := len(topo.Node) / len(topo.Socket)
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sockets = make([]int, 0, len(socketsMap))
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for socket, count := range socketsMap {
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sockets = append(sockets, socket)
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exclusive = exclusive && count == hwthreadsPerSocket
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}
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return sockets, exclusive
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}
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// Return a list of core IDs given a list of hwthread IDs. Even if just one
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// hwthread is in that core, add it to the list. If no hwthreads other than
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// those in the argument list are assigned to one of the cores in the first
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// return value, return true as the second value. TODO: Optimize this, there
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// must be a more efficient way/algorithm.
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func (topo *Topology) GetCoresFromHWThreads(
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hwthreads []int) (cores []int, exclusive bool) {
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coresMap := map[int]int{}
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for _, hwthread := range hwthreads {
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for core, hwthreadsInCore := range topo.Core {
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for _, hwthreadInCore := range hwthreadsInCore {
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if hwthread == hwthreadInCore {
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coresMap[core] += 1
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}
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}
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}
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}
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exclusive = true
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hwthreadsPerCore := len(topo.Node) / len(topo.Core)
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cores = make([]int, 0, len(coresMap))
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for core, count := range coresMap {
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cores = append(cores, core)
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exclusive = exclusive && count == hwthreadsPerCore
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}
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return cores, exclusive
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}
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// Return a list of memory domain IDs given a list of hwthread IDs. Even if
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// just one hwthread is in that memory domain, add it to the list. If no
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// hwthreads other than those in the argument list are assigned to one of the
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// memory domains in the first return value, return true as the second value.
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// TODO: Optimize this, there must be a more efficient way/algorithm.
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func (topo *Topology) GetMemoryDomainsFromHWThreads(
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hwthreads []int) (memDoms []int, exclusive bool) {
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memDomsMap := map[int]int{}
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for _, hwthread := range hwthreads {
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for memDom, hwthreadsInmemDom := range topo.MemoryDomain {
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for _, hwthreadInmemDom := range hwthreadsInmemDom {
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if hwthread == hwthreadInmemDom {
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memDomsMap[memDom] += 1
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}
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}
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}
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}
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exclusive = true
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hwthreadsPermemDom := len(topo.Node) / len(topo.MemoryDomain)
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memDoms = make([]int, 0, len(memDomsMap))
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for memDom, count := range memDomsMap {
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memDoms = append(memDoms, memDom)
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exclusive = exclusive && count == hwthreadsPermemDom
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}
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return memDoms, exclusive
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}
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func (topo *Topology) GetAcceleratorIDs() ([]int, error) {
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accels := make([]int, 0)
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for _, accel := range topo.Accelerators {
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id, err := strconv.Atoi(accel.ID)
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if err != nil {
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return nil, err
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}
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accels = append(accels, id)
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}
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return accels, nil
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}
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func (topo *Topology) GetAcceleratorIndex(id string) (int, bool) {
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for idx, accel := range topo.Accelerators {
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if accel.ID == id {
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return idx, true
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}
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}
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return -1, false
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Name string `json:"name"`
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MetricConfig []*MetricConfig `json:"metricConfig"`
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SubClusters []*schema.SubCluster `json:"subClusters"`
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}
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@ -9,6 +9,7 @@ import (
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"fmt"
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"github.com/ClusterCockpit/cc-backend/pkg/archive"
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"github.com/ClusterCockpit/cc-backend/pkg/schema"
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)
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var Clusters []*Cluster
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@ -42,7 +43,7 @@ func initClusterConfig() error {
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// For backwards compability...
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if mc.Scope == "" {
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mc.Scope = MetricScopeNode
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mc.Scope = schema.MetricScopeNode
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}
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if !mc.Scope.Valid() {
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return errors.New("cluster.metricConfig.scope must be a valid scope ('node', 'scocket', ...)")
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@ -78,7 +79,7 @@ func GetCluster(cluster string) *Cluster {
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return nil
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}
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func GetSubCluster(cluster, subcluster string) *SubCluster {
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func GetSubCluster(cluster, subcluster string) *schema.SubCluster {
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for _, c := range Clusters {
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if c.Name == cluster {
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@ -7,6 +7,8 @@ package main
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import (
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"encoding/json"
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"io"
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"github.com/ClusterCockpit/cc-backend/pkg/schema"
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)
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func DecodeJobData(r io.Reader, k string) (JobData, error) {
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@ -57,3 +59,12 @@ func EncodeJobMeta(w io.Writer, d *JobMeta) error {
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return nil
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}
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func EncodeCluster(w io.Writer, c *schema.Cluster) error {
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// Sanitize parameters
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if err := json.NewEncoder(w).Encode(c); err != nil {
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return err
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}
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return nil
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}
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@ -9,10 +9,37 @@ import (
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"flag"
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"fmt"
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"log"
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"os"
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"github.com/ClusterCockpit/cc-backend/pkg/schema"
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"github.com/ClusterCockpit/cc-backend/pkg/units"
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)
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var ar FsArchive
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func deepCopyClusterConfig(co *Cluster) schema.Cluster {
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var cn schema.Cluster
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cn.Name = co.Name
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cn.SubClusters = co.SubClusters
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for _, mco := range co.MetricConfig {
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var mcn schema.MetricConfig
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mcn.Name = mco.Name
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mcn.Scope = mco.Scope
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mcn.Aggregation = mco.Aggregation
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mcn.Timestep = mco.Timestep
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mcn.Peak = mco.Peak
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mcn.Normal = mco.Normal
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mcn.Caution = mco.Caution
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mcn.Alert = mco.Alert
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mcn.Unit = units.ConvertUnitString(mco.Unit)
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cn.MetricConfig = append(cn.MetricConfig, &mcn)
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}
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return cn
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}
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func main() {
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var srcPath string
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var dstPath string
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@ -26,7 +53,38 @@ func main() {
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log.Fatal(err)
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}
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for job := range ar.Iter() {
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fmt.Printf("Job %d\n", job.JobID)
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err = initClusterConfig()
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if err != nil {
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log.Fatal(err)
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}
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// setup new job archive
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err = os.Mkdir(dstPath, 0750)
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if err != nil {
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log.Fatal(err)
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}
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for _, c := range Clusters {
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path := fmt.Sprintf("%s/%s", dstPath, c.Name)
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fmt.Println(path)
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err = os.Mkdir(path, 0750)
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if err != nil {
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log.Fatal(err)
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}
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cn := deepCopyClusterConfig(c)
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f, err := os.Create(fmt.Sprintf("%s/%s/cluster.json", dstPath, c.Name))
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if err != nil {
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log.Fatal(err)
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}
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if err := EncodeCluster(f, &cn); err != nil {
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log.Fatal(err)
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}
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if err := f.Close(); err != nil {
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log.Fatal(err)
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}
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}
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// for job := range ar.Iter() {
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// fmt.Printf("Job %d\n", job.JobID)
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// }
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}
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@ -5,21 +5,17 @@
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package main
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import (
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"fmt"
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"io"
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"math"
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"sort"
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"unsafe"
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"github.com/ClusterCockpit/cc-backend/pkg/schema"
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)
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type JobData map[string]map[MetricScope]*JobMetric
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type JobData map[string]map[schema.MetricScope]*JobMetric
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type JobMetric struct {
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Unit string `json:"unit"`
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Scope MetricScope `json:"scope"`
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Timestep int `json:"timestep"`
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Series []Series `json:"series"`
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StatisticsSeries *StatsSeries `json:"statisticsSeries"`
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Unit string `json:"unit"`
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Scope schema.MetricScope `json:"scope"`
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Timestep int `json:"timestep"`
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Series []Series `json:"series"`
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StatisticsSeries *StatsSeries `json:"statisticsSeries"`
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}
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type Series struct {
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@ -42,282 +38,28 @@ type StatsSeries struct {
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Percentiles map[int][]Float `json:"percentiles,omitempty"`
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}
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type MetricScope string
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// type MetricScope string
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const (
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MetricScopeInvalid MetricScope = "invalid_scope"
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// const (
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// MetricScopeInvalid MetricScope = "invalid_scope"
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MetricScopeNode MetricScope = "node"
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MetricScopeSocket MetricScope = "socket"
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MetricScopeMemoryDomain MetricScope = "memoryDomain"
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MetricScopeCore MetricScope = "core"
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MetricScopeHWThread MetricScope = "hwthread"
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// MetricScopeNode MetricScope = "node"
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// MetricScopeSocket MetricScope = "socket"
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// MetricScopeMemoryDomain MetricScope = "memoryDomain"
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// MetricScopeCore MetricScope = "core"
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// MetricScopeHWThread MetricScope = "hwthread"
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MetricScopeAccelerator MetricScope = "accelerator"
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)
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// MetricScopeAccelerator MetricScope = "accelerator"
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// )
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var metricScopeGranularity map[MetricScope]int = map[MetricScope]int{
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MetricScopeNode: 10,
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MetricScopeSocket: 5,
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MetricScopeMemoryDomain: 3,
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MetricScopeCore: 2,
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MetricScopeHWThread: 1,
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// var metricScopeGranularity map[MetricScope]int = map[MetricScope]int{
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// MetricScopeNode: 10,
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// MetricScopeSocket: 5,
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// MetricScopeMemoryDomain: 3,
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// MetricScopeCore: 2,
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// MetricScopeHWThread: 1,
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MetricScopeAccelerator: 5, // Special/Randomly choosen
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// MetricScopeAccelerator: 5, // Special/Randomly choosen
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MetricScopeInvalid: -1,
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}
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func (e *MetricScope) LT(other MetricScope) bool {
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a := metricScopeGranularity[*e]
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b := metricScopeGranularity[other]
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return a < b
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}
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func (e *MetricScope) LTE(other MetricScope) bool {
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a := metricScopeGranularity[*e]
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b := metricScopeGranularity[other]
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return a <= b
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}
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func (e *MetricScope) Max(other MetricScope) MetricScope {
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a := metricScopeGranularity[*e]
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b := metricScopeGranularity[other]
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if a > b {
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||||
return *e
|
||||
}
|
||||
return other
|
||||
}
|
||||
|
||||
func (e *MetricScope) UnmarshalGQL(v interface{}) error {
|
||||
str, ok := v.(string)
|
||||
if !ok {
|
||||
return fmt.Errorf("enums must be strings")
|
||||
}
|
||||
|
||||
*e = MetricScope(str)
|
||||
if !e.Valid() {
|
||||
return fmt.Errorf("%s is not a valid MetricScope", str)
|
||||
}
|
||||
return nil
|
||||
}
|
||||
|
||||
func (e MetricScope) MarshalGQL(w io.Writer) {
|
||||
fmt.Fprintf(w, "\"%s\"", e)
|
||||
}
|
||||
|
||||
func (e MetricScope) Valid() bool {
|
||||
gran, ok := metricScopeGranularity[e]
|
||||
return ok && gran > 0
|
||||
}
|
||||
|
||||
func (jd *JobData) Size() int {
|
||||
n := 128
|
||||
for _, scopes := range *jd {
|
||||
for _, metric := range scopes {
|
||||
if metric.StatisticsSeries != nil {
|
||||
n += len(metric.StatisticsSeries.Max)
|
||||
n += len(metric.StatisticsSeries.Mean)
|
||||
n += len(metric.StatisticsSeries.Min)
|
||||
}
|
||||
|
||||
for _, series := range metric.Series {
|
||||
n += len(series.Data)
|
||||
}
|
||||
}
|
||||
}
|
||||
return n * int(unsafe.Sizeof(Float(0)))
|
||||
}
|
||||
|
||||
const smooth bool = false
|
||||
|
||||
func (jm *JobMetric) AddStatisticsSeries() {
|
||||
if jm.StatisticsSeries != nil || len(jm.Series) < 4 {
|
||||
return
|
||||
}
|
||||
|
||||
n, m := 0, len(jm.Series[0].Data)
|
||||
for _, series := range jm.Series {
|
||||
if len(series.Data) > n {
|
||||
n = len(series.Data)
|
||||
}
|
||||
if len(series.Data) < m {
|
||||
m = len(series.Data)
|
||||
}
|
||||
}
|
||||
|
||||
min, mean, max := make([]Float, n), make([]Float, n), make([]Float, n)
|
||||
i := 0
|
||||
for ; i < m; i++ {
|
||||
smin, ssum, smax := math.MaxFloat32, 0.0, -math.MaxFloat32
|
||||
notnan := 0
|
||||
for j := 0; j < len(jm.Series); j++ {
|
||||
x := float64(jm.Series[j].Data[i])
|
||||
if math.IsNaN(x) {
|
||||
continue
|
||||
}
|
||||
|
||||
notnan += 1
|
||||
ssum += x
|
||||
smin = math.Min(smin, x)
|
||||
smax = math.Max(smax, x)
|
||||
}
|
||||
|
||||
if notnan < 3 {
|
||||
min[i] = NaN
|
||||
mean[i] = NaN
|
||||
max[i] = NaN
|
||||
} else {
|
||||
min[i] = Float(smin)
|
||||
mean[i] = Float(ssum / float64(notnan))
|
||||
max[i] = Float(smax)
|
||||
}
|
||||
}
|
||||
|
||||
for ; i < n; i++ {
|
||||
min[i] = NaN
|
||||
mean[i] = NaN
|
||||
max[i] = NaN
|
||||
}
|
||||
|
||||
if smooth {
|
||||
for i := 2; i < len(mean)-2; i++ {
|
||||
if min[i].IsNaN() {
|
||||
continue
|
||||
}
|
||||
|
||||
min[i] = (min[i-2] + min[i-1] + min[i] + min[i+1] + min[i+2]) / 5
|
||||
max[i] = (max[i-2] + max[i-1] + max[i] + max[i+1] + max[i+2]) / 5
|
||||
mean[i] = (mean[i-2] + mean[i-1] + mean[i] + mean[i+1] + mean[i+2]) / 5
|
||||
}
|
||||
}
|
||||
|
||||
jm.StatisticsSeries = &StatsSeries{Mean: mean, Min: min, Max: max}
|
||||
}
|
||||
|
||||
func (jd *JobData) AddNodeScope(metric string) bool {
|
||||
scopes, ok := (*jd)[metric]
|
||||
if !ok {
|
||||
return false
|
||||
}
|
||||
|
||||
var maxScope MetricScope = MetricScopeInvalid
|
||||
for scope := range scopes {
|
||||
maxScope = maxScope.Max(scope)
|
||||
}
|
||||
|
||||
if maxScope == MetricScopeInvalid || maxScope == MetricScopeNode {
|
||||
return false
|
||||
}
|
||||
|
||||
jm := scopes[maxScope]
|
||||
hosts := make(map[string][]Series, 32)
|
||||
for _, series := range jm.Series {
|
||||
hosts[series.Hostname] = append(hosts[series.Hostname], series)
|
||||
}
|
||||
|
||||
nodeJm := &JobMetric{
|
||||
Unit: jm.Unit,
|
||||
Scope: MetricScopeNode,
|
||||
Timestep: jm.Timestep,
|
||||
Series: make([]Series, 0, len(hosts)),
|
||||
}
|
||||
for hostname, series := range hosts {
|
||||
min, sum, max := math.MaxFloat32, 0.0, -math.MaxFloat32
|
||||
for _, series := range series {
|
||||
if series.Statistics == nil {
|
||||
min, sum, max = math.NaN(), math.NaN(), math.NaN()
|
||||
break
|
||||
}
|
||||
sum += series.Statistics.Avg
|
||||
min = math.Min(min, series.Statistics.Min)
|
||||
max = math.Max(max, series.Statistics.Max)
|
||||
}
|
||||
|
||||
n, m := 0, len(jm.Series[0].Data)
|
||||
for _, series := range jm.Series {
|
||||
if len(series.Data) > n {
|
||||
n = len(series.Data)
|
||||
}
|
||||
if len(series.Data) < m {
|
||||
m = len(series.Data)
|
||||
}
|
||||
}
|
||||
|
||||
i, data := 0, make([]Float, len(series[0].Data))
|
||||
for ; i < m; i++ {
|
||||
x := Float(0.0)
|
||||
for _, series := range jm.Series {
|
||||
x += series.Data[i]
|
||||
}
|
||||
data[i] = x
|
||||
}
|
||||
|
||||
for ; i < n; i++ {
|
||||
data[i] = NaN
|
||||
}
|
||||
|
||||
nodeJm.Series = append(nodeJm.Series, Series{
|
||||
Hostname: hostname,
|
||||
Statistics: &MetricStatistics{Min: min, Avg: sum / float64(len(series)), Max: max},
|
||||
Data: data,
|
||||
})
|
||||
}
|
||||
|
||||
scopes[MetricScopeNode] = nodeJm
|
||||
return true
|
||||
}
|
||||
|
||||
func (jm *JobMetric) AddPercentiles(ps []int) bool {
|
||||
if jm.StatisticsSeries == nil {
|
||||
jm.AddStatisticsSeries()
|
||||
}
|
||||
|
||||
if len(jm.Series) < 3 {
|
||||
return false
|
||||
}
|
||||
|
||||
if jm.StatisticsSeries.Percentiles == nil {
|
||||
jm.StatisticsSeries.Percentiles = make(map[int][]Float, len(ps))
|
||||
}
|
||||
|
||||
n := 0
|
||||
for _, series := range jm.Series {
|
||||
if len(series.Data) > n {
|
||||
n = len(series.Data)
|
||||
}
|
||||
}
|
||||
|
||||
data := make([][]float64, n)
|
||||
for i := 0; i < n; i++ {
|
||||
vals := make([]float64, 0, len(jm.Series))
|
||||
for _, series := range jm.Series {
|
||||
if i < len(series.Data) {
|
||||
vals = append(vals, float64(series.Data[i]))
|
||||
}
|
||||
}
|
||||
|
||||
sort.Float64s(vals)
|
||||
data[i] = vals
|
||||
}
|
||||
|
||||
for _, p := range ps {
|
||||
if p < 1 || p > 99 {
|
||||
panic("invalid percentile")
|
||||
}
|
||||
|
||||
if _, ok := jm.StatisticsSeries.Percentiles[p]; ok {
|
||||
continue
|
||||
}
|
||||
|
||||
percentiles := make([]Float, n)
|
||||
for i := 0; i < n; i++ {
|
||||
sorted := data[i]
|
||||
percentiles[i] = Float(sorted[(len(sorted)*p)/100])
|
||||
}
|
||||
|
||||
jm.StatisticsSeries.Percentiles[p] = percentiles
|
||||
}
|
||||
|
||||
return true
|
||||
}
|
||||
// MetricScopeInvalid: -1,
|
||||
// }
|
||||
|
||||
Loading…
Reference in New Issue
Block a user