mirror of
https://github.com/ClusterCockpit/cc-backend
synced 2024-11-10 08:57:25 +01:00
Split job Repository in multiple files
This commit is contained in:
parent
797d5da80b
commit
695e8e270a
@ -14,12 +14,9 @@ import (
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"sync"
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"time"
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"github.com/99designs/gqlgen/graphql"
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"github.com/ClusterCockpit/cc-backend/internal/auth"
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"github.com/ClusterCockpit/cc-backend/internal/config"
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"github.com/ClusterCockpit/cc-backend/internal/graph/model"
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"github.com/ClusterCockpit/cc-backend/internal/metricdata"
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"github.com/ClusterCockpit/cc-backend/pkg/archive"
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"github.com/ClusterCockpit/cc-backend/pkg/log"
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"github.com/ClusterCockpit/cc-backend/pkg/lrucache"
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"github.com/ClusterCockpit/cc-backend/pkg/schema"
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@ -765,242 +762,6 @@ func (r *JobRepository) FindJobsBefore(startTime int64) ([]*schema.Job, error) {
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return jobs, nil
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}
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// GraphQL validation should make sure that no unkown values can be specified.
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var groupBy2column = map[model.Aggregate]string{
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model.AggregateUser: "job.user",
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model.AggregateProject: "job.project",
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model.AggregateCluster: "job.cluster",
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}
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// Helper function for the jobsStatistics GraphQL query placed here so that schema.resolvers.go is not too full.
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func (r *JobRepository) JobsStatistics(ctx context.Context,
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filter []*model.JobFilter,
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groupBy *model.Aggregate) ([]*model.JobsStatistics, error) {
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start := time.Now()
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// In case `groupBy` is nil (not used), the model.JobsStatistics used is at the key '' (empty string)
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stats := map[string]*model.JobsStatistics{}
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var castType string
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switch r.driver {
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case "sqlite3":
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castType = "int"
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case "mysql":
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castType = "unsigned"
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}
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// `socketsPerNode` and `coresPerSocket` can differ from cluster to cluster, so we need to explicitly loop over those.
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for _, cluster := range archive.Clusters {
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for _, subcluster := range cluster.SubClusters {
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corehoursCol := fmt.Sprintf("CAST(ROUND(SUM(job.duration * job.num_nodes * %d * %d) / 3600) as %s)", subcluster.SocketsPerNode, subcluster.CoresPerSocket, castType)
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var rawQuery sq.SelectBuilder
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if groupBy == nil {
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rawQuery = sq.Select(
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"''",
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"COUNT(job.id)",
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fmt.Sprintf("CAST(ROUND(SUM(job.duration) / 3600) as %s)", castType),
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corehoursCol,
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).From("job")
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} else {
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col := groupBy2column[*groupBy]
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rawQuery = sq.Select(
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col,
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"COUNT(job.id)",
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fmt.Sprintf("CAST(ROUND(SUM(job.duration) / 3600) as %s)", castType),
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corehoursCol,
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).From("job").GroupBy(col)
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}
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rawQuery = rawQuery.
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Where("job.cluster = ?", cluster.Name).
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Where("job.subcluster = ?", subcluster.Name)
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query, qerr := SecurityCheck(ctx, rawQuery)
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if qerr != nil {
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return nil, qerr
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}
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for _, f := range filter {
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query = BuildWhereClause(f, query)
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}
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rows, err := query.RunWith(r.DB).Query()
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if err != nil {
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log.Warn("Error while querying DB for job statistics")
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return nil, err
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}
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for rows.Next() {
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var id sql.NullString
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var jobs, walltime, corehours sql.NullInt64
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if err := rows.Scan(&id, &jobs, &walltime, &corehours); err != nil {
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log.Warn("Error while scanning rows")
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return nil, err
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}
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if id.Valid {
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if s, ok := stats[id.String]; ok {
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s.TotalJobs += int(jobs.Int64)
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s.TotalWalltime += int(walltime.Int64)
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s.TotalCoreHours += int(corehours.Int64)
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} else {
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stats[id.String] = &model.JobsStatistics{
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ID: id.String,
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TotalJobs: int(jobs.Int64),
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TotalWalltime: int(walltime.Int64),
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TotalCoreHours: int(corehours.Int64),
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}
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}
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}
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}
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}
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}
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if groupBy == nil {
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query := sq.Select("COUNT(job.id)").From("job").Where("job.duration < ?", config.Keys.ShortRunningJobsDuration)
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query, qerr := SecurityCheck(ctx, query)
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if qerr != nil {
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return nil, qerr
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}
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for _, f := range filter {
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query = BuildWhereClause(f, query)
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}
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if err := query.RunWith(r.DB).QueryRow().Scan(&(stats[""].ShortJobs)); err != nil {
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log.Warn("Error while scanning rows for short job stats")
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return nil, err
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}
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} else {
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col := groupBy2column[*groupBy]
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query := sq.Select(col, "COUNT(job.id)").From("job").Where("job.duration < ?", config.Keys.ShortRunningJobsDuration)
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query, qerr := SecurityCheck(ctx, query)
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if qerr != nil {
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return nil, qerr
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}
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for _, f := range filter {
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query = BuildWhereClause(f, query)
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}
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rows, err := query.RunWith(r.DB).Query()
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if err != nil {
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log.Warn("Error while querying jobs for short jobs")
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return nil, err
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}
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for rows.Next() {
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var id sql.NullString
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var shortJobs sql.NullInt64
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if err := rows.Scan(&id, &shortJobs); err != nil {
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log.Warn("Error while scanning rows for short jobs")
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return nil, err
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}
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if id.Valid {
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stats[id.String].ShortJobs = int(shortJobs.Int64)
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}
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}
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if col == "job.user" {
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for id := range stats {
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emptyDash := "-"
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user := auth.GetUser(ctx)
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name, _ := r.FindColumnValue(user, id, "user", "name", "username", false)
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if name != "" {
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stats[id].Name = &name
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} else {
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stats[id].Name = &emptyDash
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}
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}
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}
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}
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// Calculating the histogram data is expensive, so only do it if needed.
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// An explicit resolver can not be used because we need to know the filters.
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histogramsNeeded := false
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fields := graphql.CollectFieldsCtx(ctx, nil)
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for _, col := range fields {
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if col.Name == "histDuration" || col.Name == "histNumNodes" {
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histogramsNeeded = true
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}
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}
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res := make([]*model.JobsStatistics, 0, len(stats))
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for _, stat := range stats {
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res = append(res, stat)
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id, col := "", ""
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if groupBy != nil {
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id = stat.ID
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col = groupBy2column[*groupBy]
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}
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if histogramsNeeded {
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var err error
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value := fmt.Sprintf(`CAST(ROUND((CASE WHEN job.job_state = "running" THEN %d - job.start_time ELSE job.duration END) / 3600) as %s) as value`, time.Now().Unix(), castType)
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stat.HistDuration, err = r.jobsStatisticsHistogram(ctx, value, filter, id, col)
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if err != nil {
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log.Warn("Error while loading job statistics histogram: running jobs")
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return nil, err
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}
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stat.HistNumNodes, err = r.jobsStatisticsHistogram(ctx, "job.num_nodes as value", filter, id, col)
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if err != nil {
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log.Warn("Error while loading job statistics histogram: num nodes")
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return nil, err
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}
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}
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}
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log.Infof("Timer JobStatistics %s", time.Since(start))
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return res, nil
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}
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// `value` must be the column grouped by, but renamed to "value". `id` and `col` can optionally be used
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// to add a condition to the query of the kind "<col> = <id>".
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func (r *JobRepository) jobsStatisticsHistogram(ctx context.Context,
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value string, filters []*model.JobFilter, id, col string) ([]*model.HistoPoint, error) {
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start := time.Now()
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query, qerr := SecurityCheck(ctx, sq.Select(value, "COUNT(job.id) AS count").From("job"))
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if qerr != nil {
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return nil, qerr
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}
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for _, f := range filters {
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query = BuildWhereClause(f, query)
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}
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if len(id) != 0 && len(col) != 0 {
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query = query.Where(col+" = ?", id)
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}
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rows, err := query.GroupBy("value").RunWith(r.DB).Query()
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if err != nil {
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log.Error("Error while running query")
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return nil, err
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}
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points := make([]*model.HistoPoint, 0)
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for rows.Next() {
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point := model.HistoPoint{}
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if err := rows.Scan(&point.Value, &point.Count); err != nil {
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log.Warn("Error while scanning rows")
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return nil, err
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}
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points = append(points, &point)
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}
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log.Infof("Timer jobsStatisticsHistogram %s", time.Since(start))
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return points, nil
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}
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const NamedJobInsert string = `INSERT INTO job (
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job_id, user, project, cluster, subcluster, ` + "`partition`" + `, array_job_id, num_nodes, num_hwthreads, num_acc,
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exclusive, monitoring_status, smt, job_state, start_time, duration, walltime, resources, meta_data,
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@ -1025,96 +786,3 @@ func (r *JobRepository) InsertJob(job *schema.Job) (int64, error) {
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return id, nil
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}
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type Transaction struct {
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tx *sqlx.Tx
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stmt *sqlx.NamedStmt
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}
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func (r *JobRepository) TransactionInit() (*Transaction, error) {
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var err error
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t := new(Transaction)
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// Inserts are bundled into transactions because in sqlite,
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// that speeds up inserts A LOT.
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t.tx, err = r.DB.Beginx()
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if err != nil {
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log.Warn("Error while bundling transactions")
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return nil, err
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}
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t.stmt, err = t.tx.PrepareNamed(NamedJobInsert)
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if err != nil {
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log.Warn("Error while preparing namedJobInsert")
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return nil, err
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}
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return t, nil
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}
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func (r *JobRepository) TransactionCommit(t *Transaction) error {
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var err error
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if t.tx != nil {
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if err = t.tx.Commit(); err != nil {
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log.Warn("Error while committing transactions")
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return err
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}
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}
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t.tx, err = r.DB.Beginx()
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if err != nil {
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log.Warn("Error while bundling transactions")
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return err
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}
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t.stmt = t.tx.NamedStmt(t.stmt)
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return nil
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}
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func (r *JobRepository) TransactionEnd(t *Transaction) error {
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if err := t.tx.Commit(); err != nil {
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log.Warn("Error while committing SQL transactions")
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return err
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}
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return nil
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}
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func (r *JobRepository) TransactionAdd(t *Transaction, job schema.Job) (int64, error) {
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res, err := t.stmt.Exec(job)
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if err != nil {
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log.Errorf("repository initDB(): %v", err)
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return 0, err
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}
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id, err := res.LastInsertId()
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if err != nil {
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log.Errorf("repository initDB(): %v", err)
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return 0, err
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}
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return id, nil
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}
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func (r *JobRepository) TransactionAddTag(t *Transaction, tag *schema.Tag) (int64, error) {
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res, err := t.tx.Exec(`INSERT INTO tag (tag_name, tag_type) VALUES (?, ?)`, tag.Name, tag.Type)
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if err != nil {
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log.Errorf("Error while inserting tag into tag table: %v (Type %v)", tag.Name, tag.Type)
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return 0, err
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}
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tagId, err := res.LastInsertId()
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if err != nil {
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log.Warn("Error while getting last insert ID")
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return 0, err
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}
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return tagId, nil
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}
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func (r *JobRepository) TransactionSetTag(t *Transaction, jobId int64, tagId int64) error {
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if _, err := t.tx.Exec(`INSERT INTO jobtag (job_id, tag_id) VALUES (?, ?)`, jobId, tagId); err != nil {
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log.Errorf("Error while inserting jobtag into jobtag table: %v (TagID %v)", jobId, tagId)
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return err
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}
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return nil
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}
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256
internal/repository/stats.go
Normal file
256
internal/repository/stats.go
Normal file
@ -0,0 +1,256 @@
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// Copyright (C) 2022 NHR@FAU, University Erlangen-Nuremberg.
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// All rights reserved.
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// Use of this source code is governed by a MIT-style
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// license that can be found in the LICENSE file.
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package repository
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import (
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"context"
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"database/sql"
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"fmt"
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"time"
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"github.com/99designs/gqlgen/graphql"
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"github.com/ClusterCockpit/cc-backend/internal/auth"
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"github.com/ClusterCockpit/cc-backend/internal/config"
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"github.com/ClusterCockpit/cc-backend/internal/graph/model"
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"github.com/ClusterCockpit/cc-backend/pkg/archive"
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"github.com/ClusterCockpit/cc-backend/pkg/log"
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sq "github.com/Masterminds/squirrel"
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)
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// GraphQL validation should make sure that no unkown values can be specified.
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var groupBy2column = map[model.Aggregate]string{
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model.AggregateUser: "job.user",
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model.AggregateProject: "job.project",
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model.AggregateCluster: "job.cluster",
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}
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// Helper function for the jobsStatistics GraphQL query placed here so that schema.resolvers.go is not too full.
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func (r *JobRepository) JobsStatistics(ctx context.Context,
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filter []*model.JobFilter,
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groupBy *model.Aggregate) ([]*model.JobsStatistics, error) {
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|
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start := time.Now()
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// In case `groupBy` is nil (not used), the model.JobsStatistics used is at the key '' (empty string)
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stats := map[string]*model.JobsStatistics{}
|
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var castType string
|
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|
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switch r.driver {
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case "sqlite3":
|
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castType = "int"
|
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case "mysql":
|
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castType = "unsigned"
|
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}
|
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|
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// `socketsPerNode` and `coresPerSocket` can differ from cluster to cluster, so we need to explicitly loop over those.
|
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for _, cluster := range archive.Clusters {
|
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for _, subcluster := range cluster.SubClusters {
|
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corehoursCol := fmt.Sprintf("CAST(ROUND(SUM(job.duration * job.num_nodes * %d * %d) / 3600) as %s)", subcluster.SocketsPerNode, subcluster.CoresPerSocket, castType)
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var rawQuery sq.SelectBuilder
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if groupBy == nil {
|
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rawQuery = sq.Select(
|
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"''",
|
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"COUNT(job.id)",
|
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fmt.Sprintf("CAST(ROUND(SUM(job.duration) / 3600) as %s)", castType),
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corehoursCol,
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).From("job")
|
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} else {
|
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col := groupBy2column[*groupBy]
|
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rawQuery = sq.Select(
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col,
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"COUNT(job.id)",
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fmt.Sprintf("CAST(ROUND(SUM(job.duration) / 3600) as %s)", castType),
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corehoursCol,
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).From("job").GroupBy(col)
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}
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rawQuery = rawQuery.
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Where("job.cluster = ?", cluster.Name).
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Where("job.subcluster = ?", subcluster.Name)
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|
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query, qerr := SecurityCheck(ctx, rawQuery)
|
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|
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if qerr != nil {
|
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return nil, qerr
|
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}
|
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|
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for _, f := range filter {
|
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query = BuildWhereClause(f, query)
|
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}
|
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|
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rows, err := query.RunWith(r.DB).Query()
|
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if err != nil {
|
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log.Warn("Error while querying DB for job statistics")
|
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return nil, err
|
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}
|
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|
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for rows.Next() {
|
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var id sql.NullString
|
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var jobs, walltime, corehours sql.NullInt64
|
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if err := rows.Scan(&id, &jobs, &walltime, &corehours); err != nil {
|
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log.Warn("Error while scanning rows")
|
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return nil, err
|
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}
|
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|
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if id.Valid {
|
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if s, ok := stats[id.String]; ok {
|
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s.TotalJobs += int(jobs.Int64)
|
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s.TotalWalltime += int(walltime.Int64)
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s.TotalCoreHours += int(corehours.Int64)
|
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} else {
|
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stats[id.String] = &model.JobsStatistics{
|
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ID: id.String,
|
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TotalJobs: int(jobs.Int64),
|
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TotalWalltime: int(walltime.Int64),
|
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TotalCoreHours: int(corehours.Int64),
|
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}
|
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}
|
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}
|
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}
|
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|
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}
|
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}
|
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|
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if groupBy == nil {
|
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|
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query := sq.Select("COUNT(job.id)").From("job").Where("job.duration < ?", config.Keys.ShortRunningJobsDuration)
|
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query, qerr := SecurityCheck(ctx, query)
|
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|
||||
if qerr != nil {
|
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return nil, qerr
|
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}
|
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|
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for _, f := range filter {
|
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query = BuildWhereClause(f, query)
|
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}
|
||||
if err := query.RunWith(r.DB).QueryRow().Scan(&(stats[""].ShortJobs)); err != nil {
|
||||
log.Warn("Error while scanning rows for short job stats")
|
||||
return nil, err
|
||||
}
|
||||
} else {
|
||||
col := groupBy2column[*groupBy]
|
||||
|
||||
query := sq.Select(col, "COUNT(job.id)").From("job").Where("job.duration < ?", config.Keys.ShortRunningJobsDuration)
|
||||
|
||||
query, qerr := SecurityCheck(ctx, query)
|
||||
|
||||
if qerr != nil {
|
||||
return nil, qerr
|
||||
}
|
||||
|
||||
for _, f := range filter {
|
||||
query = BuildWhereClause(f, query)
|
||||
}
|
||||
rows, err := query.RunWith(r.DB).Query()
|
||||
if err != nil {
|
||||
log.Warn("Error while querying jobs for short jobs")
|
||||
return nil, err
|
||||
}
|
||||
|
||||
for rows.Next() {
|
||||
var id sql.NullString
|
||||
var shortJobs sql.NullInt64
|
||||
if err := rows.Scan(&id, &shortJobs); err != nil {
|
||||
log.Warn("Error while scanning rows for short jobs")
|
||||
return nil, err
|
||||
}
|
||||
|
||||
if id.Valid {
|
||||
stats[id.String].ShortJobs = int(shortJobs.Int64)
|
||||
}
|
||||
}
|
||||
|
||||
if col == "job.user" {
|
||||
for id := range stats {
|
||||
emptyDash := "-"
|
||||
user := auth.GetUser(ctx)
|
||||
name, _ := r.FindColumnValue(user, id, "user", "name", "username", false)
|
||||
if name != "" {
|
||||
stats[id].Name = &name
|
||||
} else {
|
||||
stats[id].Name = &emptyDash
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// Calculating the histogram data is expensive, so only do it if needed.
|
||||
// An explicit resolver can not be used because we need to know the filters.
|
||||
histogramsNeeded := false
|
||||
fields := graphql.CollectFieldsCtx(ctx, nil)
|
||||
for _, col := range fields {
|
||||
if col.Name == "histDuration" || col.Name == "histNumNodes" {
|
||||
histogramsNeeded = true
|
||||
}
|
||||
}
|
||||
|
||||
res := make([]*model.JobsStatistics, 0, len(stats))
|
||||
for _, stat := range stats {
|
||||
res = append(res, stat)
|
||||
id, col := "", ""
|
||||
if groupBy != nil {
|
||||
id = stat.ID
|
||||
col = groupBy2column[*groupBy]
|
||||
}
|
||||
|
||||
if histogramsNeeded {
|
||||
var err error
|
||||
value := fmt.Sprintf(`CAST(ROUND((CASE WHEN job.job_state = "running" THEN %d - job.start_time ELSE job.duration END) / 3600) as %s) as value`, time.Now().Unix(), castType)
|
||||
stat.HistDuration, err = r.jobsStatisticsHistogram(ctx, value, filter, id, col)
|
||||
if err != nil {
|
||||
log.Warn("Error while loading job statistics histogram: running jobs")
|
||||
return nil, err
|
||||
}
|
||||
|
||||
stat.HistNumNodes, err = r.jobsStatisticsHistogram(ctx, "job.num_nodes as value", filter, id, col)
|
||||
if err != nil {
|
||||
log.Warn("Error while loading job statistics histogram: num nodes")
|
||||
return nil, err
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
log.Infof("Timer JobStatistics %s", time.Since(start))
|
||||
return res, nil
|
||||
}
|
||||
|
||||
// `value` must be the column grouped by, but renamed to "value". `id` and `col` can optionally be used
|
||||
// to add a condition to the query of the kind "<col> = <id>".
|
||||
func (r *JobRepository) jobsStatisticsHistogram(ctx context.Context,
|
||||
value string, filters []*model.JobFilter, id, col string) ([]*model.HistoPoint, error) {
|
||||
|
||||
start := time.Now()
|
||||
query, qerr := SecurityCheck(ctx, sq.Select(value, "COUNT(job.id) AS count").From("job"))
|
||||
|
||||
if qerr != nil {
|
||||
return nil, qerr
|
||||
}
|
||||
|
||||
for _, f := range filters {
|
||||
query = BuildWhereClause(f, query)
|
||||
}
|
||||
|
||||
if len(id) != 0 && len(col) != 0 {
|
||||
query = query.Where(col+" = ?", id)
|
||||
}
|
||||
|
||||
rows, err := query.GroupBy("value").RunWith(r.DB).Query()
|
||||
if err != nil {
|
||||
log.Error("Error while running query")
|
||||
return nil, err
|
||||
}
|
||||
|
||||
points := make([]*model.HistoPoint, 0)
|
||||
for rows.Next() {
|
||||
point := model.HistoPoint{}
|
||||
if err := rows.Scan(&point.Value, &point.Count); err != nil {
|
||||
log.Warn("Error while scanning rows")
|
||||
return nil, err
|
||||
}
|
||||
|
||||
points = append(points, &point)
|
||||
}
|
||||
log.Infof("Timer jobsStatisticsHistogram %s", time.Since(start))
|
||||
return points, nil
|
||||
}
|
||||
104
internal/repository/transaction.go
Normal file
104
internal/repository/transaction.go
Normal file
@ -0,0 +1,104 @@
|
||||
// Copyright (C) 2022 NHR@FAU, University Erlangen-Nuremberg.
|
||||
// All rights reserved.
|
||||
// Use of this source code is governed by a MIT-style
|
||||
// license that can be found in the LICENSE file.
|
||||
package repository
|
||||
|
||||
import (
|
||||
"github.com/ClusterCockpit/cc-backend/pkg/log"
|
||||
"github.com/ClusterCockpit/cc-backend/pkg/schema"
|
||||
"github.com/jmoiron/sqlx"
|
||||
)
|
||||
|
||||
type Transaction struct {
|
||||
tx *sqlx.Tx
|
||||
stmt *sqlx.NamedStmt
|
||||
}
|
||||
|
||||
func (r *JobRepository) TransactionInit() (*Transaction, error) {
|
||||
var err error
|
||||
t := new(Transaction)
|
||||
// Inserts are bundled into transactions because in sqlite,
|
||||
// that speeds up inserts A LOT.
|
||||
t.tx, err = r.DB.Beginx()
|
||||
if err != nil {
|
||||
log.Warn("Error while bundling transactions")
|
||||
return nil, err
|
||||
}
|
||||
|
||||
t.stmt, err = t.tx.PrepareNamed(NamedJobInsert)
|
||||
if err != nil {
|
||||
log.Warn("Error while preparing namedJobInsert")
|
||||
return nil, err
|
||||
}
|
||||
|
||||
return t, nil
|
||||
}
|
||||
|
||||
func (r *JobRepository) TransactionCommit(t *Transaction) error {
|
||||
var err error
|
||||
if t.tx != nil {
|
||||
if err = t.tx.Commit(); err != nil {
|
||||
log.Warn("Error while committing transactions")
|
||||
return err
|
||||
}
|
||||
}
|
||||
|
||||
t.tx, err = r.DB.Beginx()
|
||||
if err != nil {
|
||||
log.Warn("Error while bundling transactions")
|
||||
return err
|
||||
}
|
||||
|
||||
t.stmt = t.tx.NamedStmt(t.stmt)
|
||||
return nil
|
||||
}
|
||||
|
||||
func (r *JobRepository) TransactionEnd(t *Transaction) error {
|
||||
if err := t.tx.Commit(); err != nil {
|
||||
log.Warn("Error while committing SQL transactions")
|
||||
return err
|
||||
}
|
||||
|
||||
return nil
|
||||
}
|
||||
|
||||
func (r *JobRepository) TransactionAdd(t *Transaction, job schema.Job) (int64, error) {
|
||||
res, err := t.stmt.Exec(job)
|
||||
if err != nil {
|
||||
log.Errorf("repository initDB(): %v", err)
|
||||
return 0, err
|
||||
}
|
||||
|
||||
id, err := res.LastInsertId()
|
||||
if err != nil {
|
||||
log.Errorf("repository initDB(): %v", err)
|
||||
return 0, err
|
||||
}
|
||||
|
||||
return id, nil
|
||||
}
|
||||
|
||||
func (r *JobRepository) TransactionAddTag(t *Transaction, tag *schema.Tag) (int64, error) {
|
||||
res, err := t.tx.Exec(`INSERT INTO tag (tag_name, tag_type) VALUES (?, ?)`, tag.Name, tag.Type)
|
||||
if err != nil {
|
||||
log.Errorf("Error while inserting tag into tag table: %v (Type %v)", tag.Name, tag.Type)
|
||||
return 0, err
|
||||
}
|
||||
tagId, err := res.LastInsertId()
|
||||
if err != nil {
|
||||
log.Warn("Error while getting last insert ID")
|
||||
return 0, err
|
||||
}
|
||||
|
||||
return tagId, nil
|
||||
}
|
||||
|
||||
func (r *JobRepository) TransactionSetTag(t *Transaction, jobId int64, tagId int64) error {
|
||||
if _, err := t.tx.Exec(`INSERT INTO jobtag (job_id, tag_id) VALUES (?, ?)`, jobId, tagId); err != nil {
|
||||
log.Errorf("Error while inserting jobtag into jobtag table: %v (TagID %v)", jobId, tagId)
|
||||
return err
|
||||
}
|
||||
|
||||
return nil
|
||||
}
|
||||
Loading…
Reference in New Issue
Block a user