ClusterCockpit/cc-backend
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Merge pull request #112 from ClusterCockpit/fix-import-flag

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Fix import flag
This commit is contained in:
Jan Eitzinger 2023-05-05 06:05:35 +02:00 committed by GitHub
commit 436f69bf01
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GPG Key ID: 4AEE18F83AFDEB23
50 changed files with 2624 additions and 3121 deletions
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23
Makefile
View File

@ -1,12 +1,15 @@
TARGET = ./cc-backend
VAR = ./var
DB = ./var/job.db
FRONTEND = ./web/frontend
VERSION = 1
GIT_HASH := $(shell git rev-parse --short HEAD || echo 'development')
CURRENT_TIME = $(shell date +"%Y-%m-%d:T%H:%M:%S")
LD_FLAGS = '-s -X main.buildTime=${CURRENT_TIME} -X main.version=${VERSION} -X main.hash=${GIT_HASH}'
EXECUTABLES = go npm
K := $(foreach exec,$(EXECUTABLES),\
$(if $(shell which $(exec)),some string,$(error "No $(exec) in PATH")))
SVELTE_COMPONENTS = status \
analysis \
node \
@ -28,14 +31,20 @@ SVELTE_SRC = $(wildcard $(FRONTEND)/src/*.svelte) \
.NOTPARALLEL:
$(TARGET): $(VAR) $(DB) $(SVELTE_TARGETS)
$(TARGET): $(VAR) $(SVELTE_TARGETS)
$(info ===> BUILD cc-backend)
@go build -ldflags=${LD_FLAGS} ./cmd/cc-backend
clean:
$(info ===> CLEAN)
@go clean
@rm $(TARGET)
@rm -f $(TARGET)
distclean:
@$(MAKE) clean
$(info ===> DISTCLEAN)
@rm -rf $(FRONTEND)/node_modules
@rm -rf $(VAR)
test:
$(info ===> TESTING)
@ -49,15 +58,11 @@ tags:
$(VAR):
@mkdir $(VAR)
@touch ./var/job.db
cd web/frontend && yarn install
$(DB):
./cc-backend --migrate-db
cd web/frontend && npm install
$(SVELTE_TARGETS): $(SVELTE_SRC)
$(info ===> BUILD frontend)
cd web/frontend && yarn build
cd web/frontend && npm run build
install: $(TARGET)
@WORKSPACE=$(PREFIX)

10
cmd/cc-backend/main.go
View File

@ -29,6 +29,7 @@ import (
"github.com/ClusterCockpit/cc-backend/internal/config"
"github.com/ClusterCockpit/cc-backend/internal/graph"
"github.com/ClusterCockpit/cc-backend/internal/graph/generated"
"github.com/ClusterCockpit/cc-backend/internal/importer"
"github.com/ClusterCockpit/cc-backend/internal/metricdata"
"github.com/ClusterCockpit/cc-backend/internal/repository"
"github.com/ClusterCockpit/cc-backend/internal/routerConfig"
@ -116,7 +117,10 @@ func main() {
}
if flagMigrateDB {
repository.MigrateDB(config.Keys.DBDriver, config.Keys.DB)
err := repository.MigrateDB(config.Keys.DBDriver, config.Keys.DB)
if err != nil {
log.Fatal(err)
}
os.Exit(0)
}
@ -196,13 +200,13 @@ func main() {
}
if flagReinitDB {
if err := repository.InitDB(); err != nil {
if err := importer.InitDB(); err != nil {
log.Fatalf("failed to re-initialize repository DB: %s", err.Error())
}
}
if flagImportJob != "" {
if err := repository.HandleImportFlag(flagImportJob); err != nil {
if err := importer.HandleImportFlag(flagImportJob); err != nil {
log.Fatalf("job import failed: %s", err.Error())
}
}

1
go.mod
View File

@ -4,6 +4,7 @@ go 1.18
require (
github.com/99designs/gqlgen v0.17.24
github.com/ClusterCockpit/cc-units v0.4.0
github.com/Masterminds/squirrel v1.5.3
github.com/go-ldap/ldap/v3 v3.4.4
github.com/go-sql-driver/mysql v1.7.0

4
go.sum
View File

@ -81,6 +81,10 @@ github.com/BurntSushi/toml v0.3.1/go.mod h1:xHWCNGjB5oqiDr8zfno3MHue2Ht5sIBksp03
github.com/BurntSushi/toml v1.1.0/go.mod h1:CxXYINrC8qIiEnFrOxCa7Jy5BFHlXnUU2pbicEuybxQ=
github.com/BurntSushi/xgb v0.0.0-20160522181843-27f122750802/go.mod h1:IVnqGOEym/WlBOVXweHU+Q+/VP0lqqI8lqeDx9IjBqo=
github.com/ClickHouse/clickhouse-go v1.4.3/go.mod h1:EaI/sW7Azgz9UATzd5ZdZHRUhHgv5+JMS9NSr2smCJI=
github.com/ClusterCockpit/cc-units v0.3.0 h1:JEKgEyvN4GABheKIReW2siDXgpYf2zf4STXV2ip418Y=
github.com/ClusterCockpit/cc-units v0.3.0/go.mod h1:3S3PAhAayS3pbgcT4q9Vn9VJw22Op51X0YimtG77zBw=
github.com/ClusterCockpit/cc-units v0.4.0 h1:zP5DOu99GmErW0tCDf0gcLrlWt42RQ9dpoONEOh4cI0=
github.com/ClusterCockpit/cc-units v0.4.0/go.mod h1:3S3PAhAayS3pbgcT4q9Vn9VJw22Op51X0YimtG77zBw=
github.com/KyleBanks/depth v1.2.1 h1:5h8fQADFrWtarTdtDudMmGsC7GPbOAu6RVB3ffsVFHc=
github.com/KyleBanks/depth v1.2.1/go.mod h1:jzSb9d0L43HxTQfT+oSA1EEp2q+ne2uh6XgeJcm8brE=
github.com/Masterminds/squirrel v1.5.3 h1:YPpoceAcxuzIljlr5iWpNKaql7hLeG1KLSrhvdHpkZc=

316
test/integration_test.go → internal/api/api_test.go
View File

@ -1,4 +1,8 @@
package test
// Copyright (C) 2022 NHR@FAU, University Erlangen-Nuremberg.
// All rights reserved.
// Use of this source code is governed by a MIT-style
// license that can be found in the LICENSE file.
package api_test
import (
"bytes"
@ -44,16 +48,7 @@ func setup(t *testing.T) *api.RestApi {
"duration": { "from": 0, "to": 86400 },
"startTime": { "from": "2022-01-01T00:00:00Z", "to": null }
}
},
{
"name": "taurus",
"metricDataRepository": {"kind": "test", "url": "bla:8081"},
"filterRanges": {
"numNodes": { "from": 1, "to": 4000 },
"duration": { "from": 0, "to": 604800 },
"startTime": { "from": "2010-01-01T00:00:00Z", "to": null }
}
}
}
]
}`
const testclusterJson = `{
@ -111,215 +106,6 @@ func setup(t *testing.T) *api.RestApi {
}
]
}`
const taurusclusterJson = `{
"name": "taurus",
"subClusters": [
{
"name": "haswell",
"processorType": "Intel Haswell",
"socketsPerNode": 2,
"coresPerSocket": 12,
"threadsPerCore": 1,
"flopRateScalar": {
"unit": {
"prefix": "G",
"base": "F/s"
},
"value": 14
},
"flopRateSimd": {
"unit": {
"prefix": "G",
"base": "F/s"
},
"value": 112
},
"memoryBandwidth": {
"unit": {
"prefix": "G",
"base": "B/s"
},
"value": 24
},
"numberOfNodes": 70,
"nodes": "w11[27-45,49-63,69-72]",
"topology": {
"node": [ 0, 1 ],
"socket": [
[ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 ],
[ 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23 ]
],
"memoryDomain": [
[ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 ],
[ 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23 ]
],
"core": [ [ 0 ], [ 1 ], [ 2 ], [ 3 ], [ 4 ], [ 5 ], [ 6 ], [ 7 ], [ 8 ], [ 9 ], [ 10 ], [ 11 ], [ 12 ], [ 13 ], [ 14 ], [ 15 ], [ 16 ], [ 17 ], [ 18 ], [ 19 ], [ 20 ], [ 21 ], [ 22 ], [ 23 ] ]
}
}
],
"metricConfig": [
{
"name": "cpu_used",
"scope": "core",
"unit": {"base": ""},
"aggregation": "avg",
"timestep": 30,
"peak": 1,
"normal": 0.5,
"caution": 2e-07,
"alert": 1e-07,
"subClusters": [
{
"name": "haswell",
"peak": 1,
"normal": 0.5,
"caution": 2e-07,
"alert": 1e-07
}
]
},
{
"name": "ipc",
"scope": "core",
"unit": { "base": "IPC"},
"aggregation": "avg",
"timestep": 60,
"peak": 2,
"normal": 1,
"caution": 0.1,
"alert": 0.5,
"subClusters": [
{
"name": "haswell",
"peak": 2,
"normal": 1,
"caution": 0.1,
"alert": 0.5
}
]
},
{
"name": "flops_any",
"scope": "core",
"unit": { "base": "F/s"},
"aggregation": "sum",
"timestep": 60,
"peak": 40000000000,
"normal": 20000000000,
"caution": 30000000000,
"alert": 35000000000,
"subClusters": [
{
"name": "haswell",
"peak": 40000000000,
"normal": 20000000000,
"caution": 30000000000,
"alert": 35000000000
}
]
},
{
"name": "mem_bw",
"scope": "socket",
"unit": { "base": "B/s"},
"aggregation": "sum",
"timestep": 60,
"peak": 58800000000,
"normal": 28800000000,
"caution": 38800000000,
"alert": 48800000000,
"subClusters": [
{
"name": "haswell",
"peak": 58800000000,
"normal": 28800000000,
"caution": 38800000000,
"alert": 48800000000
}
]
},
{
"name": "file_bw",
"scope": "node",
"unit": { "base": "B/s"},
"aggregation": "sum",
"timestep": 30,
"peak": 20000000000,
"normal": 5000000000,
"caution": 9000000000,
"alert": 19000000000,
"subClusters": [
{
"name": "haswell",
"peak": 20000000000,
"normal": 5000000000,
"caution": 9000000000,
"alert": 19000000000
}
]
},
{
"name": "net_bw",
"scope": "node",
"unit": { "base": "B/s"},
"timestep": 30,
"aggregation": "sum",
"peak": 7000000000,
"normal": 5000000000,
"caution": 6000000000,
"alert": 6500000000,
"subClusters": [
{
"name": "haswell",
"peak": 7000000000,
"normal": 5000000000,
"caution": 6000000000,
"alert": 6500000000
}
]
},
{
"name": "mem_used",
"scope": "node",
"unit": {"base": "B"},
"aggregation": "sum",
"timestep": 30,
"peak": 32000000000,
"normal": 2000000000,
"caution": 31000000000,
"alert": 30000000000,
"subClusters": [
{
"name": "haswell",
"peak": 32000000000,
"normal": 2000000000,
"caution": 31000000000,
"alert": 30000000000
}
]
},
{
"name": "cpu_power",
"scope": "socket",
"unit": {"base": "W"},
"aggregation": "sum",
"timestep": 60,
"peak": 100,
"normal": 80,
"caution": 90,
"alert": 90,
"subClusters": [
{
"name": "haswell",
"peak": 100,
"normal": 80,
"caution": 90,
"alert": 90
}
]
}
]
}`
log.Init("info", true)
tmpdir := t.TempDir()
@ -340,15 +126,11 @@ func setup(t *testing.T) *api.RestApi {
t.Fatal(err)
}
if err := os.Mkdir(filepath.Join(jobarchive, "taurus"), 0777); err != nil {
t.Fatal(err)
}
if err := os.WriteFile(filepath.Join(jobarchive, "taurus", "cluster.json"), []byte(taurusclusterJson), 0666); err != nil {
t.Fatal(err)
}
dbfilepath := filepath.Join(tmpdir, "test.db")
repository.MigrateDB("sqlite3", dbfilepath)
err := repository.MigrateDB("sqlite3", dbfilepath)
if err != nil {
t.Fatal(err)
}
cfgFilePath := filepath.Join(tmpdir, "config.json")
if err := os.WriteFile(cfgFilePath, []byte(testconfig), 0666); err != nil {
@ -385,7 +167,7 @@ func cleanup() {
/*
* This function starts a job, stops it, and then reads its data from the job-archive.
* Do not run sub-tests in parallel! Tests should not be run in parallel at all, because
* at least `setup` modifies global state. Log-Output is redirected to /dev/null on purpose.
* at least `setup` modifies global state.
*/
func TestRestApi(t *testing.T) {
restapi := setup(t)
@ -470,15 +252,15 @@ func TestRestApi(t *testing.T) {
job.Project != "testproj" ||
job.Cluster != "testcluster" ||
job.SubCluster != "sc1" ||
*job.Partition != "default" ||
*job.Walltime != 3600 ||
*job.ArrayJobId != 0 ||
job.Partition != "default" ||
job.Walltime != 3600 ||
job.ArrayJobId != 0 ||
job.NumNodes != 1 ||
*job.NumHWThreads != 8 ||
*job.NumAcc != 0 ||
job.NumHWThreads != 8 ||
job.NumAcc != 0 ||
job.Exclusive != 1 ||
job.MonitoringStatus != 1 ||
*job.SMT != 1 ||
job.SMT != 1 ||
!reflect.DeepEqual(job.Resources, []*schema.Resource{{Hostname: "host123", HWThreads: []int{0, 1, 2, 3, 4, 5, 6, 7}}}) ||
job.StartTime.Unix() != 123456789 {
t.Fatalf("unexpected job properties: %#v", job)
@ -566,17 +348,7 @@ func TestRestApi(t *testing.T) {
}
})
// t.Run("FailedJob", func(t *testing.T) {
// subtestLetJobFail(t, restapi, r)
// })
// t.Run("ImportJob", func(t *testing.T) {
// testImportFlag(t)
// })
}
func subtestLetJobFail(t *testing.T, restapi *api.RestApi, r *mux.Router) {
const startJobBody string = `{
const startJobBodyFailed string = `{
"jobId": 12345,
"user": "testuser",
"project": "testproj",
@ -595,8 +367,8 @@ func subtestLetJobFail(t *testing.T, restapi *api.RestApi, r *mux.Router) {
"startTime": 12345678
}`
ok := t.Run("StartJob", func(t *testing.T) {
req := httptest.NewRequest(http.MethodPost, "/api/jobs/start_job/", bytes.NewBuffer([]byte(startJobBody)))
ok := t.Run("StartJobFailed", func(t *testing.T) {
req := httptest.NewRequest(http.MethodPost, "/api/jobs/start_job/", bytes.NewBuffer([]byte(startJobBodyFailed)))
recorder := httptest.NewRecorder()
r.ServeHTTP(recorder, req)
@ -609,7 +381,7 @@ func subtestLetJobFail(t *testing.T, restapi *api.RestApi, r *mux.Router) {
t.Fatal("subtest failed")
}
const stopJobBody string = `{
const stopJobBodyFailed string = `{
"jobId": 12345,
"cluster": "testcluster",
@ -617,8 +389,8 @@ func subtestLetJobFail(t *testing.T, restapi *api.RestApi, r *mux.Router) {
"stopTime": 12355678
}`
ok = t.Run("StopJob", func(t *testing.T) {
req := httptest.NewRequest(http.MethodPost, "/api/jobs/stop_job/", bytes.NewBuffer([]byte(stopJobBody)))
ok = t.Run("StopJobFailed", func(t *testing.T) {
req := httptest.NewRequest(http.MethodPost, "/api/jobs/stop_job/", bytes.NewBuffer([]byte(stopJobBodyFailed)))
recorder := httptest.NewRecorder()
r.ServeHTTP(recorder, req)
@ -642,45 +414,3 @@ func subtestLetJobFail(t *testing.T, restapi *api.RestApi, r *mux.Router) {
t.Fatal("subtest failed")
}
}
func testImportFlag(t *testing.T) {
if err := repository.HandleImportFlag("meta.json:data.json"); err != nil {
t.Fatal(err)
}
repo := repository.GetJobRepository()
jobId := int64(20639587)
cluster := "taurus"
startTime := int64(1635856524)
job, err := repo.Find(&jobId, &cluster, &startTime)
if err != nil {
t.Fatal(err)
}
if job.NumNodes != 2 {
t.Errorf("NumNode: Received %d, expected 2", job.NumNodes)
}
ar := archive.GetHandle()
data, err := ar.LoadJobData(job)
if err != nil {
t.Fatal(err)
}
if len(data) != 8 {
t.Errorf("Job data length: Got %d, want 8", len(data))
}
r := map[string]string{"mem_used": "GB", "net_bw": "KB/s",
"cpu_power": "W", "cpu_used": "",
"file_bw": "KB/s", "flops_any": "F/s",
"mem_bw": "GB/s", "ipc": "IPC"}
for name, scopes := range data {
for _, metric := range scopes {
if metric.Unit.Base != r[name] {
t.Errorf("Metric %s unit: Got %s, want %s", name, metric.Unit.Base, r[name])
}
}
}
}

5
internal/api/rest.go
View File

@ -22,6 +22,7 @@ import (
"github.com/ClusterCockpit/cc-backend/internal/auth"
"github.com/ClusterCockpit/cc-backend/internal/graph"
"github.com/ClusterCockpit/cc-backend/internal/graph/model"
"github.com/ClusterCockpit/cc-backend/internal/importer"
"github.com/ClusterCockpit/cc-backend/internal/repository"
"github.com/ClusterCockpit/cc-backend/pkg/archive"
"github.com/ClusterCockpit/cc-backend/pkg/log"
@ -252,7 +253,7 @@ func (api *RestApi) getJobs(rw http.ResponseWriter, r *http.Request) {
results := make([]*schema.JobMeta, 0, len(jobs))
for _, job := range jobs {
if withMetadata {
if _, err := api.JobRepository.FetchMetadata(job); err != nil {
if _, err = api.JobRepository.FetchMetadata(job); err != nil {
handleError(err, http.StatusInternalServerError, rw)
return
}
@ -396,7 +397,7 @@ func (api *RestApi) startJob(rw http.ResponseWriter, r *http.Request) {
if req.State == "" {
req.State = schema.JobStateRunning
}
if err := repository.SanityChecks(&req.BaseJob); err != nil {
if err := importer.SanityChecks(&req.BaseJob); err != nil {
handleError(err, http.StatusBadRequest, rw)
return
}

91
internal/graph/generated/generated.go
View File

@ -3355,9 +3355,9 @@ func (ec *executionContext) _Job_walltime(ctx context.Context, field graphql.Col
}
return graphql.Null
}
res := resTmp.(*int64)
res := resTmp.(int64)
fc.Result = res
return ec.marshalNInt2ᚖint64(ctx, field.Selections, res)
return ec.marshalNInt2int64(ctx, field.Selections, res)
}
func (ec *executionContext) fieldContext_Job_walltime(ctx context.Context, field graphql.CollectedField) (fc *graphql.FieldContext, err error) {
@ -3443,9 +3443,9 @@ func (ec *executionContext) _Job_numHWThreads(ctx context.Context, field graphql
}
return graphql.Null
}
res := resTmp.(*int32)
res := resTmp.(int32)
fc.Result = res
return ec.marshalNInt2ᚖint32(ctx, field.Selections, res)
return ec.marshalNInt2int32(ctx, field.Selections, res)
}
func (ec *executionContext) fieldContext_Job_numHWThreads(ctx context.Context, field graphql.CollectedField) (fc *graphql.FieldContext, err error) {
@ -3487,9 +3487,9 @@ func (ec *executionContext) _Job_numAcc(ctx context.Context, field graphql.Colle
}
return graphql.Null
}
res := resTmp.(*int32)
res := resTmp.(int32)
fc.Result = res
return ec.marshalNInt2ᚖint32(ctx, field.Selections, res)
return ec.marshalNInt2int32(ctx, field.Selections, res)
}
func (ec *executionContext) fieldContext_Job_numAcc(ctx context.Context, field graphql.CollectedField) (fc *graphql.FieldContext, err error) {
@ -3531,9 +3531,9 @@ func (ec *executionContext) _Job_SMT(ctx context.Context, field graphql.Collecte
}
return graphql.Null
}
res := resTmp.(*int32)
res := resTmp.(int32)
fc.Result = res
return ec.marshalNInt2ᚖint32(ctx, field.Selections, res)
return ec.marshalNInt2int32(ctx, field.Selections, res)
}
func (ec *executionContext) fieldContext_Job_SMT(ctx context.Context, field graphql.CollectedField) (fc *graphql.FieldContext, err error) {
@ -3619,9 +3619,9 @@ func (ec *executionContext) _Job_partition(ctx context.Context, field graphql.Co
}
return graphql.Null
}
res := resTmp.(*string)
res := resTmp.(string)
fc.Result = res
return ec.marshalNString2ᚖstring(ctx, field.Selections, res)
return ec.marshalNString2string(ctx, field.Selections, res)
}
func (ec *executionContext) fieldContext_Job_partition(ctx context.Context, field graphql.CollectedField) (fc *graphql.FieldContext, err error) {
@ -3663,9 +3663,9 @@ func (ec *executionContext) _Job_arrayJobId(ctx context.Context, field graphql.C
}
return graphql.Null
}
res := resTmp.(*int64)
res := resTmp.(int64)
fc.Result = res
return ec.marshalNInt2ᚖint64(ctx, field.Selections, res)
return ec.marshalNInt2int64(ctx, field.Selections, res)
}
func (ec *executionContext) fieldContext_Job_arrayJobId(ctx context.Context, field graphql.CollectedField) (fc *graphql.FieldContext, err error) {
@ -8739,9 +8739,9 @@ func (ec *executionContext) _Unit_prefix(ctx context.Context, field graphql.Coll
if resTmp == nil {
return graphql.Null
}
res := resTmp.(*string)
res := resTmp.(string)
fc.Result = res
return ec.marshalOString2ᚖstring(ctx, field.Selections, res)
return ec.marshalOString2string(ctx, field.Selections, res)
}
func (ec *executionContext) fieldContext_Unit_prefix(ctx context.Context, field graphql.CollectedField) (fc *graphql.FieldContext, err error) {
@ -13593,48 +13593,6 @@ func (ec *executionContext) marshalNInt2ᚖint(ctx context.Context, sel ast.Sele
return res
}
func (ec *executionContext) unmarshalNInt2ᚖint32(ctx context.Context, v interface{}) (*int32, error) {
res, err := graphql.UnmarshalInt32(v)
return &res, graphql.ErrorOnPath(ctx, err)
}
func (ec *executionContext) marshalNInt2ᚖint32(ctx context.Context, sel ast.SelectionSet, v *int32) graphql.Marshaler {
if v == nil {
if !graphql.HasFieldError(ctx, graphql.GetFieldContext(ctx)) {
ec.Errorf(ctx, "the requested element is null which the schema does not allow")
}
return graphql.Null
}
res := graphql.MarshalInt32(*v)
if res == graphql.Null {
if !graphql.HasFieldError(ctx, graphql.GetFieldContext(ctx)) {
ec.Errorf(ctx, "the requested element is null which the schema does not allow")
}
}
return res
}
func (ec *executionContext) unmarshalNInt2ᚖint64(ctx context.Context, v interface{}) (*int64, error) {
res, err := graphql.UnmarshalInt64(v)
return &res, graphql.ErrorOnPath(ctx, err)
}
func (ec *executionContext) marshalNInt2ᚖint64(ctx context.Context, sel ast.SelectionSet, v *int64) graphql.Marshaler {
if v == nil {
if !graphql.HasFieldError(ctx, graphql.GetFieldContext(ctx)) {
ec.Errorf(ctx, "the requested element is null which the schema does not allow")
}
return graphql.Null
}
res := graphql.MarshalInt64(*v)
if res == graphql.Null {
if !graphql.HasFieldError(ctx, graphql.GetFieldContext(ctx)) {
ec.Errorf(ctx, "the requested element is null which the schema does not allow")
}
}
return res
}
func (ec *executionContext) marshalNJob2ᚕᚖgithubᚗcomᚋClusterCockpitᚋccᚑbackendᚋpkgᚋschemaᚐJobᚄ(ctx context.Context, sel ast.SelectionSet, v []*schema.Job) graphql.Marshaler {
ret := make(graphql.Array, len(v))
var wg sync.WaitGroup
@ -14203,27 +14161,6 @@ func (ec *executionContext) marshalNString2ᚕstringᚄ(ctx context.Context, sel
return ret
}
func (ec *executionContext) unmarshalNString2ᚖstring(ctx context.Context, v interface{}) (*string, error) {
res, err := graphql.UnmarshalString(v)
return &res, graphql.ErrorOnPath(ctx, err)
}
func (ec *executionContext) marshalNString2ᚖstring(ctx context.Context, sel ast.SelectionSet, v *string) graphql.Marshaler {
if v == nil {
if !graphql.HasFieldError(ctx, graphql.GetFieldContext(ctx)) {
ec.Errorf(ctx, "the requested element is null which the schema does not allow")
}
return graphql.Null
}
res := graphql.MarshalString(*v)
if res == graphql.Null {
if !graphql.HasFieldError(ctx, graphql.GetFieldContext(ctx)) {
ec.Errorf(ctx, "the requested element is null which the schema does not allow")
}
}
return res
}
func (ec *executionContext) marshalNSubCluster2ᚕᚖgithubᚗcomᚋClusterCockpitᚋccᚑbackendᚋpkgᚋschemaᚐSubClusterᚄ(ctx context.Context, sel ast.SelectionSet, v []*schema.SubCluster) graphql.Marshaler {
ret := make(graphql.Array, len(v))
var wg sync.WaitGroup

131
internal/importer/handleImport.go Normal file
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@ -0,0 +1,131 @@
// Copyright (C) 2022 NHR@FAU, University Erlangen-Nuremberg.
// All rights reserved.
// Use of this source code is governed by a MIT-style
// license that can be found in the LICENSE file.
package importer
import (
"bytes"
"encoding/json"
"fmt"
"os"
"strings"
"time"
"github.com/ClusterCockpit/cc-backend/internal/config"
"github.com/ClusterCockpit/cc-backend/internal/repository"
"github.com/ClusterCockpit/cc-backend/pkg/archive"
"github.com/ClusterCockpit/cc-backend/pkg/log"
"github.com/ClusterCockpit/cc-backend/pkg/schema"
)
// Import all jobs specified as `<path-to-meta.json>:<path-to-data.json>,...`
func HandleImportFlag(flag string) error {
r := repository.GetJobRepository()
for _, pair := range strings.Split(flag, ",") {
files := strings.Split(pair, ":")
if len(files) != 2 {
return fmt.Errorf("REPOSITORY/INIT > invalid import flag format")
}
raw, err := os.ReadFile(files[0])
if err != nil {
log.Warn("Error while reading metadata file for import")
return err
}
if config.Keys.Validate {
if err = schema.Validate(schema.Meta, bytes.NewReader(raw)); err != nil {
return fmt.Errorf("REPOSITORY/INIT > validate job meta: %v", err)
}
}
dec := json.NewDecoder(bytes.NewReader(raw))
dec.DisallowUnknownFields()
jobMeta := schema.JobMeta{BaseJob: schema.JobDefaults}
if err = dec.Decode(&jobMeta); err != nil {
log.Warn("Error while decoding raw json metadata for import")
return err
}
raw, err = os.ReadFile(files[1])
if err != nil {
log.Warn("Error while reading jobdata file for import")
return err
}
if config.Keys.Validate {
if err = schema.Validate(schema.Data, bytes.NewReader(raw)); err != nil {
return fmt.Errorf("REPOSITORY/INIT > validate job data: %v", err)
}
}
dec = json.NewDecoder(bytes.NewReader(raw))
dec.DisallowUnknownFields()
jobData := schema.JobData{}
if err = dec.Decode(&jobData); err != nil {
log.Warn("Error while decoding raw json jobdata for import")
return err
}
// checkJobData(&jobData)
jobMeta.MonitoringStatus = schema.MonitoringStatusArchivingSuccessful
// if _, err = r.Find(&jobMeta.JobID, &jobMeta.Cluster, &jobMeta.StartTime); err != sql.ErrNoRows {
// if err != nil {
// log.Warn("Error while finding job in jobRepository")
// return err
// }
//
// return fmt.Errorf("REPOSITORY/INIT > a job with that jobId, cluster and startTime does already exist")
// }
//
job := schema.Job{
BaseJob: jobMeta.BaseJob,
StartTime: time.Unix(jobMeta.StartTime, 0),
StartTimeUnix: jobMeta.StartTime,
}
// TODO: Other metrics...
job.FlopsAnyAvg = loadJobStat(&jobMeta, "flops_any")
job.MemBwAvg = loadJobStat(&jobMeta, "mem_bw")
job.NetBwAvg = loadJobStat(&jobMeta, "net_bw")
job.FileBwAvg = loadJobStat(&jobMeta, "file_bw")
job.RawResources, err = json.Marshal(job.Resources)
if err != nil {
log.Warn("Error while marshaling job resources")
return err
}
job.RawMetaData, err = json.Marshal(job.MetaData)
if err != nil {
log.Warn("Error while marshaling job metadata")
return err
}
if err = SanityChecks(&job.BaseJob); err != nil {
log.Warn("BaseJob SanityChecks failed")
return err
}
if err = archive.GetHandle().ImportJob(&jobMeta, &jobData); err != nil {
log.Error("Error while importing job")
return err
}
id, err := r.InsertJob(&job)
if err != nil {
log.Warn("Error while job db insert")
return err
}
for _, tag := range job.Tags {
if _, err := r.AddTagOrCreate(id, tag.Type, tag.Name); err != nil {
log.Error("Error while adding or creating tag")
return err
}
}
log.Infof("successfully imported a new job (jobId: %d, cluster: %s, dbid: %d)", job.JobID, job.Cluster, id)
}
return nil
}

172
internal/importer/importer_test.go Normal file
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@ -0,0 +1,172 @@
// Copyright (C) 2022 NHR@FAU, University Erlangen-Nuremberg.
// All rights reserved.
// Use of this source code is governed by a MIT-style
// license that can be found in the LICENSE file.
package importer_test
import (
"encoding/json"
"fmt"
"os"
"path/filepath"
"strings"
"testing"
"github.com/ClusterCockpit/cc-backend/internal/config"
"github.com/ClusterCockpit/cc-backend/internal/importer"
"github.com/ClusterCockpit/cc-backend/internal/repository"
"github.com/ClusterCockpit/cc-backend/pkg/archive"
"github.com/ClusterCockpit/cc-backend/pkg/log"
)
func copyFile(s string, d string) error {
r, err := os.Open(s)
if err != nil {
return err
}
defer r.Close()
w, err := os.Create(d)
if err != nil {
return err
}
defer w.Close()
w.ReadFrom(r)
return nil
}
func setup(t *testing.T) *repository.JobRepository {
const testconfig = `{
"addr": "0.0.0.0:8080",
"validate": false,
"archive": {
"kind": "file",
"path": "./var/job-archive"
},
"clusters": [
{
"name": "testcluster",
"metricDataRepository": {"kind": "test", "url": "bla:8081"},
"filterRanges": {
"numNodes": { "from": 1, "to": 64 },
"duration": { "from": 0, "to": 86400 },
"startTime": { "from": "2022-01-01T00:00:00Z", "to": null }
}
},
{
"name": "fritz",
"metricDataRepository": {"kind": "test", "url": "bla:8081"},
"filterRanges": {
"numNodes": { "from": 1, "to": 944 },
"duration": { "from": 0, "to": 86400 },
"startTime": { "from": "2022-01-01T00:00:00Z", "to": null }
}
},
{
"name": "taurus",
"metricDataRepository": {"kind": "test", "url": "bla:8081"},
"filterRanges": {
"numNodes": { "from": 1, "to": 4000 },
"duration": { "from": 0, "to": 604800 },
"startTime": { "from": "2010-01-01T00:00:00Z", "to": null }
}
}
]}`
log.Init("info", true)
tmpdir := t.TempDir()
jobarchive := filepath.Join(tmpdir, "job-archive")
if err := os.Mkdir(jobarchive, 0777); err != nil {
t.Fatal(err)
}
if err := os.WriteFile(filepath.Join(jobarchive, "version.txt"), []byte(fmt.Sprintf("%d", 1)), 0666); err != nil {
t.Fatal(err)
}
fritzArchive := filepath.Join(tmpdir, "job-archive", "fritz")
if err := os.Mkdir(fritzArchive, 0777); err != nil {
t.Fatal(err)
}
if err := copyFile(filepath.Join("testdata", "cluster-fritz.json"),
filepath.Join(fritzArchive, "cluster.json")); err != nil {
t.Fatal(err)
}
dbfilepath := filepath.Join(tmpdir, "test.db")
err := repository.MigrateDB("sqlite3", dbfilepath)
if err != nil {
t.Fatal(err)
}
cfgFilePath := filepath.Join(tmpdir, "config.json")
if err := os.WriteFile(cfgFilePath, []byte(testconfig), 0666); err != nil {
t.Fatal(err)
}
config.Init(cfgFilePath)
archiveCfg := fmt.Sprintf("{\"kind\": \"file\",\"path\": \"%s\"}", jobarchive)
if err := archive.Init(json.RawMessage(archiveCfg), config.Keys.DisableArchive); err != nil {
t.Fatal(err)
}
repository.Connect("sqlite3", dbfilepath)
return repository.GetJobRepository()
}
type Result struct {
JobId int64
Cluster string
StartTime int64
Duration int32
}
func readResult(t *testing.T, testname string) Result {
var r Result
content, err := os.ReadFile(filepath.Join("testdata",
fmt.Sprintf("%s-golden.json", testname)))
if err != nil {
t.Fatal("Error when opening file: ", err)
}
err = json.Unmarshal(content, &r)
if err != nil {
t.Fatal("Error during Unmarshal(): ", err)
}
return r
}
func TestHandleImportFlag(t *testing.T) {
r := setup(t)
tests, err := filepath.Glob(filepath.Join("testdata", "*.input"))
if err != nil {
t.Fatal(err)
}
for _, path := range tests {
_, filename := filepath.Split(path)
str := strings.Split(strings.TrimSuffix(filename, ".input"), "-")
testname := str[1]
t.Run(testname, func(t *testing.T) {
s := fmt.Sprintf("%s:%s", filepath.Join("testdata",
fmt.Sprintf("meta-%s.input", testname)),
filepath.Join("testdata", fmt.Sprintf("data-%s.json", testname)))
err := importer.HandleImportFlag(s)
if err != nil {
t.Fatal(err)
}
result := readResult(t, testname)
job, err := r.Find(&result.JobId, &result.Cluster, &result.StartTime)
if err != nil {
t.Fatal(err)
}
if job.Duration != result.Duration {
t.Errorf("wrong duration for job\ngot: %d \nwant: %d", job.Duration, result.Duration)
}
})
}
}

197
internal/importer/initDB.go Normal file
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@ -0,0 +1,197 @@
// Copyright (C) 2022 NHR@FAU, University Erlangen-Nuremberg.
// All rights reserved.
// Use of this source code is governed by a MIT-style
// license that can be found in the LICENSE file.
package importer
import (
"encoding/json"
"fmt"
"strings"
"time"
"github.com/ClusterCockpit/cc-backend/internal/repository"
"github.com/ClusterCockpit/cc-backend/pkg/archive"
"github.com/ClusterCockpit/cc-backend/pkg/log"
"github.com/ClusterCockpit/cc-backend/pkg/schema"
)
// Delete the tables "job", "tag" and "jobtag" from the database and
// repopulate them using the jobs found in `archive`.
func InitDB() error {
r := repository.GetJobRepository()
if err := r.Flush(); err != nil {
log.Errorf("repository initDB(): %v", err)
return err
}
starttime := time.Now()
log.Print("Building job table...")
t, err := r.TransactionInit()
if err != nil {
log.Warn("Error while initializing SQL transactions")
return err
}
tags := make(map[string]int64)
// Not using log.Print because we want the line to end with `\r` and
// this function is only ever called when a special command line flag
// is passed anyways.
fmt.Printf("%d jobs inserted...\r", 0)
ar := archive.GetHandle()
i := 0
errorOccured := 0
for jobContainer := range ar.Iter(false) {
jobMeta := jobContainer.Meta
// Bundle 100 inserts into one transaction for better performance
if i%100 == 0 {
r.TransactionCommit(t)
fmt.Printf("%d jobs inserted...\r", i)
}
jobMeta.MonitoringStatus = schema.MonitoringStatusArchivingSuccessful
job := schema.Job{
BaseJob: jobMeta.BaseJob,
StartTime: time.Unix(jobMeta.StartTime, 0),
StartTimeUnix: jobMeta.StartTime,
}
// TODO: Other metrics...
job.FlopsAnyAvg = loadJobStat(jobMeta, "flops_any")
job.MemBwAvg = loadJobStat(jobMeta, "mem_bw")
job.NetBwAvg = loadJobStat(jobMeta, "net_bw")
job.FileBwAvg = loadJobStat(jobMeta, "file_bw")
job.RawResources, err = json.Marshal(job.Resources)
if err != nil {
log.Errorf("repository initDB(): %v", err)
errorOccured++
continue
}
job.RawMetaData, err = json.Marshal(job.MetaData)
if err != nil {
log.Errorf("repository initDB(): %v", err)
errorOccured++
continue
}
if err := SanityChecks(&job.BaseJob); err != nil {
log.Errorf("repository initDB(): %v", err)
errorOccured++
continue
}
id, err := r.TransactionAdd(t, job)
if err != nil {
log.Errorf("repository initDB(): %v", err)
errorOccured++
continue
}
for _, tag := range job.Tags {
tagstr := tag.Name + ":" + tag.Type
tagId, ok := tags[tagstr]
if !ok {
tagId, err = r.TransactionAddTag(t, tag)
if err != nil {
log.Errorf("Error adding tag: %v", err)
errorOccured++
continue
}
tags[tagstr] = tagId
}
r.TransactionSetTag(t, id, tagId)
}
if err == nil {
i += 1
}
}
if errorOccured > 0 {
log.Warnf("Error in import of %d jobs!", errorOccured)
}
r.TransactionEnd(t)
log.Printf("A total of %d jobs have been registered in %.3f seconds.\n", i, time.Since(starttime).Seconds())
return nil
}
// This function also sets the subcluster if necessary!
func SanityChecks(job *schema.BaseJob) error {
if c := archive.GetCluster(job.Cluster); c == nil {
return fmt.Errorf("no such cluster: %v", job.Cluster)
}
if err := archive.AssignSubCluster(job); err != nil {
log.Warn("Error while assigning subcluster to job")
return err
}
if !job.State.Valid() {
return fmt.Errorf("not a valid job state: %v", job.State)
}
if len(job.Resources) == 0 || len(job.User) == 0 {
return fmt.Errorf("'resources' and 'user' should not be empty")
}
if job.NumAcc < 0 || job.NumHWThreads < 0 || job.NumNodes < 1 {
return fmt.Errorf("'numNodes', 'numAcc' or 'numHWThreads' invalid")
}
if len(job.Resources) != int(job.NumNodes) {
return fmt.Errorf("len(resources) does not equal numNodes (%d vs %d)", len(job.Resources), job.NumNodes)
}
return nil
}
func loadJobStat(job *schema.JobMeta, metric string) float64 {
if stats, ok := job.Statistics[metric]; ok {
return stats.Avg
}
return 0.0
}
func checkJobData(d *schema.JobData) error {
for _, scopes := range *d {
// var newUnit schema.Unit
// TODO Add node scope if missing
for _, metric := range scopes {
if strings.Contains(metric.Unit.Base, "B/s") ||
strings.Contains(metric.Unit.Base, "F/s") ||
strings.Contains(metric.Unit.Base, "B") {
// get overall avg
sum := 0.0
for _, s := range metric.Series {
sum += s.Statistics.Avg
}
avg := sum / float64(len(metric.Series))
f, p := Normalize(avg, metric.Unit.Prefix)
if p != metric.Unit.Prefix {
fmt.Printf("Convert %e", f)
// for _, s := range metric.Series {
// fp := schema.ConvertFloatToFloat64(s.Data)
//
// for i := 0; i < len(fp); i++ {
// fp[i] *= f
// fp[i] = math.Ceil(fp[i])
// }
//
// s.Data = schema.GetFloat64ToFloat(fp)
// }
metric.Unit.Prefix = p
}
}
}
}
return nil
}

58
internal/importer/normalize.go Normal file
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@ -0,0 +1,58 @@
// Copyright (C) 2022 NHR@FAU, University Erlangen-Nuremberg.
// All rights reserved.
// Use of this source code is governed by a MIT-style
// license that can be found in the LICENSE file.
package importer
import (
"math"
ccunits "github.com/ClusterCockpit/cc-units"
)
func getNormalizationFactor(v float64) (float64, int) {
count := 0
scale := -3
if v > 1000.0 {
for v > 1000.0 {
v *= 1e-3
count++
}
} else {
for v < 1.0 {
v *= 1e3
count++
}
scale = 3
}
return math.Pow10(count * scale), count * scale
}
func getExponent(p float64) int {
count := 0
for p > 1.0 {
p = p / 1000.0
count++
}
return count * 3
}
func newPrefixFromFactor(op ccunits.Prefix, e int) ccunits.Prefix {
f := float64(op)
exp := math.Pow10(getExponent(f) - e)
return ccunits.Prefix(exp)
}
func Normalize(avg float64, p string) (float64, string) {
f, e := getNormalizationFactor(avg)
if e != 0 {
np := newPrefixFromFactor(ccunits.NewPrefix(p), e)
return f, np.Prefix()
}
return f, p
}

64
internal/importer/normalize_test.go Normal file
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@ -0,0 +1,64 @@
// Copyright (C) 2022 NHR@FAU, University Erlangen-Nuremberg.
// All rights reserved.
// Use of this source code is governed by a MIT-style
// license that can be found in the LICENSE file.
package importer
import (
"fmt"
"testing"
ccunits "github.com/ClusterCockpit/cc-units"
)
func TestNormalizeFactor(t *testing.T) {
// var us string
s := []float64{2890031237, 23998994567, 389734042344, 390349424345}
// r := []float64{3, 24, 390, 391}
total := 0.0
for _, number := range s {
total += number
}
avg := total / float64(len(s))
fmt.Printf("AVG: %e\n", avg)
f, e := getNormalizationFactor(avg)
fmt.Printf("Factor %e Count %d\n", f, e)
np := ccunits.NewPrefix("")
fmt.Printf("Prefix %e Short %s\n", float64(np), np.Prefix())
p := newPrefixFromFactor(np, e)
if p.Prefix() != "G" {
t.Errorf("Failed Prefix or unit: Want G, Got %s", p.Prefix())
}
}
func TestNormalizeKeep(t *testing.T) {
s := []float64{3.0, 24.0, 390.0, 391.0}
total := 0.0
for _, number := range s {
total += number
}
avg := total / float64(len(s))
fmt.Printf("AVG: %e\n", avg)
f, e := getNormalizationFactor(avg)
fmt.Printf("Factor %e Count %d\n", f, e)
np := ccunits.NewPrefix("G")
fmt.Printf("Prefix %e Short %s\n", float64(np), np.Prefix())
p := newPrefixFromFactor(np, e)
if p.Prefix() != "G" {
t.Errorf("Failed Prefix or unit: Want G, Got %s", p.Prefix())
}
}

746
internal/importer/testdata/cluster-fritz.json vendored Normal file
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@ -0,0 +1,746 @@
{
"name": "fritz",
"metricConfig": [
{
"name": "cpu_load",
"unit": {
"base": ""
},
"scope": "node",
"aggregation": "avg",
"timestep": 60,
"peak": 72,
"normal": 72,
"caution": 36,
"alert": 20
},
{
"name": "cpu_user",
"unit": {
"base": ""
},
"scope": "hwthread",
"aggregation": "avg",
"timestep": 60,
"peak": 100,
"normal": 50,
"caution": 20,
"alert": 10
},
{
"name": "mem_used",
"unit": {
"base": "B",
"prefix": "G"
},
"scope": "node",
"aggregation": "sum",
"timestep": 60,
"peak": 256,
"normal": 128,
"caution": 200,
"alert": 240
},
{
"name": "flops_any",
"unit": {
"base": "F/s",
"prefix": "G"
},
"scope": "hwthread",
"aggregation": "sum",
"timestep": 60,
"peak": 5600,
"normal": 1000,
"caution": 200,
"alert": 50
},
{
"name": "flops_sp",
"unit": {
"base": "F/s",
"prefix": "G"
},
"scope": "hwthread",
"aggregation": "sum",
"timestep": 60,
"peak": 5600,
"normal": 1000,
"caution": 200,
"alert": 50
},
{
"name": "flops_dp",
"unit": {
"base": "F/s",
"prefix": "G"
},
"scope": "hwthread",
"aggregation": "sum",
"timestep": 60,
"peak": 2300,
"normal": 500,
"caution": 100,
"alert": 50
},
{
"name": "mem_bw",
"unit": {
"base": "B/s",
"prefix": "G"
},
"scope": "socket",
"aggregation": "sum",
"timestep": 60,
"peak": 350,
"normal": 100,
"caution": 50,
"alert": 10
},
{
"name": "clock",
"unit": {
"base": "Hz",
"prefix": "M"
},
"scope": "hwthread",
"aggregation": "avg",
"timestep": 60,
"peak": 3000,
"normal": 2400,
"caution": 1800,
"alert": 1200
},
{
"name": "cpu_power",
"unit": {
"base": "W"
},
"scope": "socket",
"aggregation": "sum",
"timestep": 60,
"peak": 500,
"normal": 250,
"caution": 100,
"alert": 50
},
{
"name": "mem_power",
"unit": {
"base": "W"
},
"scope": "socket",
"aggregation": "sum",
"timestep": 60,
"peak": 100,
"normal": 50,
"caution": 20,
"alert": 10
},
{
"name": "ipc",
"unit": {
"base": "IPC"
},
"scope": "hwthread",
"aggregation": "avg",
"timestep": 60,
"peak": 4,
"normal": 2,
"caution": 1,
"alert": 0.5
},
{
"name": "vectorization_ratio",
"unit": {
"base": ""
},
"scope": "hwthread",
"aggregation": "avg",
"timestep": 60,
"peak": 100,
"normal": 60,
"caution": 40,
"alert": 10
},
{
"name": "ib_recv",
"unit": {
"base": "B/s"
},
"scope": "node",
"aggregation": "sum",
"timestep": 60,
"peak": 1250000,
"normal": 6000000,
"caution": 200,
"alert": 1
},
{
"name": "ib_xmit",
"unit": {
"base": "B/s"
},
"scope": "node",
"aggregation": "sum",
"timestep": 60,
"peak": 1250000,
"normal": 6000000,
"caution": 200,
"alert": 1
},
{
"name": "ib_recv_pkts",
"unit": {
"base": ""
},
"scope": "node",
"aggregation": "sum",
"timestep": 60,
"peak": 6,
"normal": 4,
"caution": 2,
"alert": 1
},
{
"name": "ib_xmit_pkts",
"unit": {
"base": ""
},
"scope": "node",
"aggregation": "sum",
"timestep": 60,
"peak": 6,
"normal": 4,
"caution": 2,
"alert": 1
},
{
"name": "nfs4_read",
"unit": {
"base": "B/s",
"prefix": "M"
},
"scope": "node",
"aggregation": "sum",
"timestep": 60,
"peak": 6,
"normal": 4,
"caution": 2,
"alert": 1
},
{
"name": "nfs4_write",
"unit": {
"base": "B/s",
"prefix": "M"
},
"scope": "node",
"aggregation": "sum",
"timestep": 60,
"peak": 6,
"normal": 4,
"caution": 2,
"alert": 1
},
{
"name": "nfs4_total",
"unit": {
"base": "B/s",
"prefix": "M"
},
"scope": "node",
"aggregation": "sum",
"timestep": 60,
"peak": 6,
"normal": 4,
"caution": 2,
"alert": 1
}
],
"subClusters": [
{
"name": "main",
"nodes": "f01[01-88],f02[01-88],f03[01-88],f03[01-88],f04[01-88],f05[01-88],f06[01-88],f07[01-88],f08[01-88],f09[01-88],f10[01-88],f11[01-56],f12[01-56]",
"processorType": "Intel Icelake",
"socketsPerNode": 2,
"coresPerSocket": 36,
"threadsPerCore": 1,
"flopRateScalar": {
"unit": {
"base": "F/s",
"prefix": "G"
},
"value": 432
},
"flopRateSimd": {
"unit": {
"base": "F/s",
"prefix": "G"
},
"value": 9216
},
"memoryBandwidth": {
"unit": {
"base": "B/s",
"prefix": "G"
},
"value": 350
},
"topology": {
"node": [
0,
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
11,
12,
13,
14,
15,
16,
17,
18,
19,
20,
21,
22,
23,
24,
25,
26,
27,
28,
29,
30,
31,
32,
33,
34,
35,
36,
37,
38,
39,
40,
41,
42,
43,
44,
45,
46,
47,
48,
49,
50,
51,
52,
53,
54,
55,
56,
57,
58,
59,
60,
61,
62,
63,
64,
65,
66,
67,
68,
69,
70,
71
],
"socket": [
[
0,
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
11,
12,
13,
14,
15,
16,
17,
18,
19,
20,
21,
22,
23,
24,
25,
26,
27,
28,
29,
30,
31,
32,
33,
34,
35
],
[
36,
37,
38,
39,
40,
41,
42,
43,
44,
45,
46,
47,
48,
49,
50,
51,
52,
53,
54,
55,
56,
57,
58,
59,
60,
61,
62,
63,
64,
65,
66,
67,
68,
69,
70,
71
]
],
"memoryDomain": [
[
0,
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
11,
12,
13,
14,
15,
16,
17
],
[
18,
19,
20,
21,
22,
23,
24,
25,
26,
27,
28,
29,
30,
31,
32,
33,
34,
35
],
[
36,
37,
38,
39,
40,
41,
42,
43,
44,
45,
46,
47,
48,
49,
50,
51,
52,
53
],
[
54,
55,
56,
57,
58,
59,
60,
61,
62,
63,
64,
65,
66,
67,
68,
69,
70,
71
]
],
"core": [
[
0
],
[
1
],
[
2
],
[
3
],
[
4
],
[
5
],
[
6
],
[
7
],
[
8
],
[
9
],
[
10
],
[
11
],
[
12
],
[
13
],
[
14
],
[
15
],
[
16
],
[
17
],
[
18
],
[
19
],
[
20
],
[
21
],
[
22
],
[
23
],
[
24
],
[
25
],
[
26
],
[
27
],
[
28
],
[
29
],
[
30
],
[
31
],
[
32
],
[
33
],
[
34
],
[
35
],
[
36
],
[
37
],
[
38
],
[
39
],
[
40
],
[
41
],
[
42
],
[
43
],
[
44
],
[
45
],
[
46
],
[
47
],
[
48
],
[
49
],
[
50
],
[
51
],
[
52
],
[
53
],
[
54
],
[
55
],
[
56
],
[
57
],
[
58
],
[
59
],
[
60
],
[
61
],
[
62
],
[
63
],
[
64
],
[
65
],
[
66
],
[
67
],
[
68
],
[
69
],
[
70
],
[
71
]
]
}
}
]
}

1
internal/importer/testdata/data-fritzError.json vendored Normal file
View File

File diff suppressed because one or more lines are too long

1
internal/importer/testdata/data-fritzMinimal.json vendored Normal file
View File

File diff suppressed because one or more lines are too long

6
internal/importer/testdata/fritzError-golden.json vendored Normal file
View File

@ -0,0 +1,6 @@
{
"jobId": 398955,
"cluster": "fritz",
"startTime": 1675956725,
"duration": 260
}

6
internal/importer/testdata/fritzMinimal-golden.json vendored Normal file
View File

@ -0,0 +1,6 @@
{
"jobId": 398764,
"cluster": "fritz",
"startTime": 1675954353,
"duration": 177
}

1
internal/importer/testdata/meta-fritzError.input vendored Normal file
View File

@ -0,0 +1 @@
{"jobId":398955,"user":"k106eb10","project":"k106eb","cluster":"fritz","subCluster":"main","partition":"singlenode","arrayJobId":0,"numNodes":1,"numHwthreads":72,"numAcc":0,"exclusive":1,"monitoringStatus":1,"smt":0,"jobState":"completed","duration":260,"walltime":86340,"resources":[{"hostname":"f0720"}],"metaData":{"jobName":"ams_pipeline","jobScript":"#!/bin/bash -l\n#SBATCH --job-name=ams_pipeline\n#SBATCH --time=23:59:00\n#SBATCH --partition=singlenode\n#SBATCH --ntasks=72\n#SBATCH --hint=multithread\n#SBATCH --chdir=/home/atuin/k106eb/k106eb10/ACE/Ni-Al/DFT/VASP_PBE_500_0.125_0.1_NM/AlNi/binaries/bulk/base-hcp/occ-shaken/hcp16.occ.4.shake.0/cfg/NiAl3NiAl11\n#SBATCH --export=NONE\nunset SLURM_EXPORT_ENV\nuss=$(whoami)\nfind /dev/shm/ -user $uss -type f -mmin +30 -delete\ncd \"/home/atuin/k106eb/k106eb10/ACE/Ni-Al/DFT/VASP_PBE_500_0.125_0.1_NM/AlNi/binaries/bulk/base-hcp/occ-shaken/hcp16.occ.4.shake.0/cfg/NiAl3NiAl11\"\nams_pipeline pipeline.json \u003e \"/home/atuin/k106eb/k106eb10/ACE/Ni-Al/DFT/VASP_PBE_500_0.125_0.1_NM/AlNi/binaries/bulk/base-hcp/occ-shaken/hcp16.occ.4.shake.0/cfg/NiAl3NiAl11/ams_pipeline_job.sh.out\" 2\u003e \"/home/atuin/k106eb/k106eb10/ACE/Ni-Al/DFT/VASP_PBE_500_0.125_0.1_NM/AlNi/binaries/bulk/base-hcp/occ-shaken/hcp16.occ.4.shake.0/cfg/NiAl3NiAl11/ams_pipeline_job.sh.err\"\n","slurmInfo":"\nJobId=398955 JobName=ams_pipeline\n UserId=k106eb10(210387) GroupId=80111\n Account=k106eb QOS=normal \n Requeue=False Restarts=0 BatchFlag=True \n TimeLimit=1439\n SubmitTime=2023-02-09T14:11:22\n Partition=singlenode \n NodeList=f0720\n NumNodes=1 NumCPUs=72 NumTasks=72 CPUs/Task=1\n NTasksPerNode:Socket:Core=0:None:None\n TRES_req=cpu=72,mem=250000M,node=1,billing=72\n TRES_alloc=cpu=72,node=1,billing=72\n Command=/home/atuin/k106eb/k106eb10/ACE/Ni-Al/DFT/VASP_PBE_500_0.125_0.1_NM/AlNi/binaries/bulk/base-hcp/occ-shaken/hcp16.occ.4.shake.0/cfg/NiAl3NiAl11/ams_pipeline_job.sh\n WorkDir=/home/atuin/k106eb/k106eb10/ACE/Ni-Al/DFT/VASP_PBE_500_0.125_0.1_NM/AlNi/binaries/bulk/base-hcp/occ-shaken/hcp16.occ.4.shake.0/cfg/NiAl3NiAl11\n StdErr=\n StdOut=ams_pipeline.o%j\n"},"startTime":1675956725,"statistics":{"clock":{"unit":{"base":"Hz","prefix":"M"},"avg":2335.254,"min":800.418,"max":2734.922},"cpu_load":{"unit":{"base":""},"avg":52.72,"min":34.46,"max":71.91},"cpu_power":{"unit":{"base":"W"},"avg":407.767,"min":93.932,"max":497.636},"cpu_user":{"unit":{"base":""},"avg":63.678,"min":19.872,"max":96.633},"flops_any":{"unit":{"base":"F/s","prefix":"G"},"avg":635.672,"min":0,"max":1332.874},"flops_dp":{"unit":{"base":"F/s","prefix":"G"},"avg":261.006,"min":0,"max":382.294},"flops_sp":{"unit":{"base":"F/s","prefix":"G"},"avg":113.659,"min":0,"max":568.286},"ib_recv":{"unit":{"base":"B/s"},"avg":27981.111,"min":69.4,"max":48084.589},"ib_recv_pkts":{"unit":{"base":"packets/s"},"avg":398.939,"min":0.5,"max":693.817},"ib_xmit":{"unit":{"base":"B/s"},"avg":188.513,"min":39.597,"max":724.568},"ib_xmit_pkts":{"unit":{"base":"packets/s"},"avg":0.867,"min":0.2,"max":2.933},"ipc":{"unit":{"base":"IPC"},"avg":0.944,"min":0.564,"max":1.291},"mem_bw":{"unit":{"base":"B/s","prefix":"G"},"avg":79.565,"min":0.021,"max":116.02},"mem_power":{"unit":{"base":"W"},"avg":24.692,"min":7.883,"max":31.318},"mem_used":{"unit":{"base":"B","prefix":"G"},"avg":22.566,"min":8.225,"max":27.613},"nfs4_read":{"unit":{"base":"B/s","prefix":"M"},"avg":647,"min":0,"max":1946},"nfs4_total":{"unit":{"base":"B/s","prefix":"M"},"avg":6181.6,"min":1270,"max":11411},"nfs4_write":{"unit":{"base":"B/s","prefix":"M"},"avg":22.4,"min":11,"max":29},"vectorization_ratio":{"unit":{"base":"%"},"avg":77.351,"min":0,"max":98.837}}}

1
internal/importer/testdata/meta-fritzMinimal.input vendored Normal file
View File

@ -0,0 +1 @@
{"jobId":398764,"user":"k106eb10","project":"k106eb","cluster":"fritz","subCluster":"main","numNodes":1,"exclusive":1,"jobState":"completed","duration":177,"resources":[{"hostname":"f0649"}],"startTime":1675954353,"statistics":{"clock":{"unit":{"base":"Hz","prefix":"M"},"avg":1336.519,"min":801.564,"max":2348.215},"cpu_load":{"unit":{"base":""},"avg":31.64,"min":17.36,"max":45.54},"cpu_power":{"unit":{"base":"W"},"avg":150.018,"min":93.672,"max":261.592},"cpu_user":{"unit":{"base":""},"avg":28.518,"min":0.09,"max":57.343},"flops_any":{"unit":{"base":"F/s","prefix":"G"},"avg":45.012,"min":0,"max":135.037},"flops_dp":{"unit":{"base":"F/s","prefix":"G"},"avg":22.496,"min":0,"max":67.488},"flops_sp":{"unit":{"base":"F/s","prefix":"G"},"avg":0.02,"min":0,"max":0.061},"ib_recv":{"unit":{"base":"B/s"},"avg":14442.82,"min":219.998,"max":42581.368},"ib_recv_pkts":{"unit":{"base":"packets/s"},"avg":201.532,"min":1.25,"max":601.345},"ib_xmit":{"unit":{"base":"B/s"},"avg":282.098,"min":56.2,"max":569.363},"ib_xmit_pkts":{"unit":{"base":"packets/s"},"avg":1.228,"min":0.433,"max":2},"ipc":{"unit":{"base":"IPC"},"avg":0.77,"min":0.564,"max":0.906},"mem_bw":{"unit":{"base":"B/s","prefix":"G"},"avg":4.872,"min":0.025,"max":14.552},"mem_power":{"unit":{"base":"W"},"avg":7.725,"min":6.286,"max":10.556},"mem_used":{"unit":{"base":"B","prefix":"G"},"avg":6.162,"min":6.103,"max":6.226},"nfs4_read":{"unit":{"base":"B/s","prefix":"M"},"avg":1045.333,"min":311,"max":1525},"nfs4_total":{"unit":{"base":"B/s","prefix":"M"},"avg":6430,"min":2796,"max":11518},"nfs4_write":{"unit":{"base":"B/s","prefix":"M"},"avg":24.333,"min":0,"max":38},"vectorization_ratio":{"unit":{"base":"%"},"avg":25.528,"min":0,"max":76.585}}}

2
internal/metricdata/cc-metric-store.go
View File

@ -293,7 +293,7 @@ func (ccms *CCMetricStore) buildQueries(
scopesLoop:
for _, requestedScope := range scopes {
nativeScope := mc.Scope
if nativeScope == schema.MetricScopeAccelerator && job.NumAcc == nil {
if nativeScope == schema.MetricScopeAccelerator && job.NumAcc == 0 {
continue
}

5
internal/repository/dbConnection.go
View File

@ -56,7 +56,10 @@ func Connect(driver string, db string) {
}
dbConnInstance = &DBConnection{DB: dbHandle, Driver: driver}
checkDBVersion(driver, dbHandle.DB)
err = checkDBVersion(driver, dbHandle.DB)
if err != nil {
log.Fatal(err)
}
})
}

351
internal/repository/init.go
View File

@ -1,351 +0,0 @@
// Copyright (C) 2022 NHR@FAU, University Erlangen-Nuremberg.
// All rights reserved.
// Use of this source code is governed by a MIT-style
// license that can be found in the LICENSE file.
package repository
import (
"bytes"
"database/sql"
"encoding/json"
"fmt"
"os"
"strings"
"time"
"github.com/ClusterCockpit/cc-backend/internal/config"
"github.com/ClusterCockpit/cc-backend/pkg/archive"
"github.com/ClusterCockpit/cc-backend/pkg/log"
"github.com/ClusterCockpit/cc-backend/pkg/schema"
"github.com/ClusterCockpit/cc-backend/pkg/units"
)
const NamedJobInsert string = `INSERT INTO job (
job_id, user, project, cluster, subcluster, ` + "`partition`" + `, array_job_id, num_nodes, num_hwthreads, num_acc,
exclusive, monitoring_status, smt, job_state, start_time, duration, walltime, resources, meta_data,
mem_used_max, flops_any_avg, mem_bw_avg, load_avg, net_bw_avg, net_data_vol_total, file_bw_avg, file_data_vol_total
) VALUES (
:job_id, :user, :project, :cluster, :subcluster, :partition, :array_job_id, :num_nodes, :num_hwthreads, :num_acc,
:exclusive, :monitoring_status, :smt, :job_state, :start_time, :duration, :walltime, :resources, :meta_data,
:mem_used_max, :flops_any_avg, :mem_bw_avg, :load_avg, :net_bw_avg, :net_data_vol_total, :file_bw_avg, :file_data_vol_total
);`
// Import all jobs specified as `<path-to-meta.json>:<path-to-data.json>,...`
func HandleImportFlag(flag string) error {
for _, pair := range strings.Split(flag, ",") {
files := strings.Split(pair, ":")
if len(files) != 2 {
return fmt.Errorf("REPOSITORY/INIT > invalid import flag format")
}
raw, err := os.ReadFile(files[0])
if err != nil {
log.Warn("Error while reading metadata file for import")
return err
}
if config.Keys.Validate {
if err := schema.Validate(schema.Meta, bytes.NewReader(raw)); err != nil {
return fmt.Errorf("REPOSITORY/INIT > validate job meta: %v", err)
}
}
dec := json.NewDecoder(bytes.NewReader(raw))
dec.DisallowUnknownFields()
jobMeta := schema.JobMeta{BaseJob: schema.JobDefaults}
if err := dec.Decode(&jobMeta); err != nil {
log.Warn("Error while decoding raw json metadata for import")
return err
}
raw, err = os.ReadFile(files[1])
if err != nil {
log.Warn("Error while reading jobdata file for import")
return err
}
if config.Keys.Validate {
if err := schema.Validate(schema.Data, bytes.NewReader(raw)); err != nil {
return fmt.Errorf("REPOSITORY/INIT > validate job data: %v", err)
}
}
dec = json.NewDecoder(bytes.NewReader(raw))
dec.DisallowUnknownFields()
jobData := schema.JobData{}
if err := dec.Decode(&jobData); err != nil {
log.Warn("Error while decoding raw json jobdata for import")
return err
}
checkJobData(&jobData)
SanityChecks(&jobMeta.BaseJob)
jobMeta.MonitoringStatus = schema.MonitoringStatusArchivingSuccessful
if job, err := GetJobRepository().Find(&jobMeta.JobID, &jobMeta.Cluster, &jobMeta.StartTime); err != sql.ErrNoRows {
if err != nil {
log.Warn("Error while finding job in jobRepository")
return err
}
return fmt.Errorf("REPOSITORY/INIT > a job with that jobId, cluster and startTime does already exist (dbid: %d)", job.ID)
}
job := schema.Job{
BaseJob: jobMeta.BaseJob,
StartTime: time.Unix(jobMeta.StartTime, 0),
StartTimeUnix: jobMeta.StartTime,
}
// TODO: Other metrics...
job.FlopsAnyAvg = loadJobStat(&jobMeta, "flops_any")
job.MemBwAvg = loadJobStat(&jobMeta, "mem_bw")
job.NetBwAvg = loadJobStat(&jobMeta, "net_bw")
job.FileBwAvg = loadJobStat(&jobMeta, "file_bw")
job.RawResources, err = json.Marshal(job.Resources)
if err != nil {
log.Warn("Error while marshaling job resources")
return err
}
job.RawMetaData, err = json.Marshal(job.MetaData)
if err != nil {
log.Warn("Error while marshaling job metadata")
return err
}
if err := SanityChecks(&job.BaseJob); err != nil {
log.Warn("BaseJob SanityChecks failed")
return err
}
if err := archive.GetHandle().ImportJob(&jobMeta, &jobData); err != nil {
log.Error("Error while importing job")
return err
}
res, err := GetConnection().DB.NamedExec(NamedJobInsert, job)
if err != nil {
log.Warn("Error while NamedJobInsert")
return err
}
id, err := res.LastInsertId()
if err != nil {
log.Warn("Error while getting last insert ID")
return err
}
for _, tag := range job.Tags {
if _, err := GetJobRepository().AddTagOrCreate(id, tag.Type, tag.Name); err != nil {
log.Error("Error while adding or creating tag")
return err
}
}
log.Infof("successfully imported a new job (jobId: %d, cluster: %s, dbid: %d)", job.JobID, job.Cluster, id)
}
return nil
}
// Delete the tables "job", "tag" and "jobtag" from the database and
// repopulate them using the jobs found in `archive`.
func InitDB() error {
db := GetConnection()
starttime := time.Now()
log.Print("Building job table...")
// Inserts are bundled into transactions because in sqlite,
// that speeds up inserts A LOT.
tx, err := db.DB.Beginx()
if err != nil {
log.Warn("Error while bundling transactions")
return err
}
stmt, err := tx.PrepareNamed(NamedJobInsert)
if err != nil {
log.Warn("Error while preparing namedJobInsert")
return err
}
tags := make(map[string]int64)
// Not using log.Print because we want the line to end with `\r` and
// this function is only ever called when a special command line flag
// is passed anyways.
fmt.Printf("%d jobs inserted...\r", 0)
ar := archive.GetHandle()
i := 0
errorOccured := 0
for jobContainer := range ar.Iter(false) {
jobMeta := jobContainer.Meta
// // Bundle 100 inserts into one transaction for better performance:
if i%10 == 0 {
if tx != nil {
if err := tx.Commit(); err != nil {
log.Warn("Error while committing transactions for jobMeta")
return err
}
}
tx, err = db.DB.Beginx()
if err != nil {
log.Warn("Error while bundling transactions for jobMeta")
return err
}
stmt = tx.NamedStmt(stmt)
fmt.Printf("%d jobs inserted...\r", i)
}
jobMeta.MonitoringStatus = schema.MonitoringStatusArchivingSuccessful
job := schema.Job{
BaseJob: jobMeta.BaseJob,
StartTime: time.Unix(jobMeta.StartTime, 0),
StartTimeUnix: jobMeta.StartTime,
}
// TODO: Other metrics...
job.FlopsAnyAvg = loadJobStat(jobMeta, "flops_any")
job.MemBwAvg = loadJobStat(jobMeta, "mem_bw")
job.NetBwAvg = loadJobStat(jobMeta, "net_bw")
job.FileBwAvg = loadJobStat(jobMeta, "file_bw")
job.RawResources, err = json.Marshal(job.Resources)
if err != nil {
log.Errorf("repository initDB(): %v", err)
errorOccured++
continue
}
job.RawMetaData, err = json.Marshal(job.MetaData)
if err != nil {
log.Errorf("repository initDB(): %v", err)
errorOccured++
continue
}
if err := SanityChecks(&job.BaseJob); err != nil {
log.Errorf("repository initDB(): %v", err)
errorOccured++
continue
}
res, err := stmt.Exec(job)
if err != nil {
log.Errorf("repository initDB(): %v", err)
errorOccured++
continue
}
id, err := res.LastInsertId()
if err != nil {
log.Errorf("repository initDB(): %v", err)
errorOccured++
continue
}
for _, tag := range job.Tags {
tagstr := tag.Name + ":" + tag.Type
tagId, ok := tags[tagstr]
if !ok {
res, err := tx.Exec(`INSERT INTO tag (tag_name, tag_type) VALUES (?, ?)`, tag.Name, tag.Type)
if err != nil {
log.Errorf("Error while inserting tag into tag table: %v (Type %v)", tag.Name, tag.Type)
return err
}
tagId, err = res.LastInsertId()
if err != nil {
log.Warn("Error while getting last insert ID")
return err
}
tags[tagstr] = tagId
}
if _, err := tx.Exec(`INSERT INTO jobtag (job_id, tag_id) VALUES (?, ?)`, id, tagId); err != nil {
log.Errorf("Error while inserting jobtag into jobtag table: %v (TagID %v)", id, tagId)
return err
}
}
if err == nil {
i += 1
}
}
if errorOccured > 0 {
log.Warnf("Error in import of %d jobs!", errorOccured)
}
if err := tx.Commit(); err != nil {
log.Warn("Error while committing SQL transactions")
return err
}
log.Printf("A total of %d jobs have been registered in %.3f seconds.\n", i, time.Since(starttime).Seconds())
return nil
}
// This function also sets the subcluster if necessary!
func SanityChecks(job *schema.BaseJob) error {
if c := archive.GetCluster(job.Cluster); c == nil {
return fmt.Errorf("no such cluster: %v", job.Cluster)
}
if err := archive.AssignSubCluster(job); err != nil {
log.Warn("Error while assigning subcluster to job")
return err
}
if !job.State.Valid() {
return fmt.Errorf("not a valid job state: %v", job.State)
}
if len(job.Resources) == 0 || len(job.User) == 0 {
return fmt.Errorf("'resources' and 'user' should not be empty")
}
if *job.NumAcc < 0 || *job.NumHWThreads < 0 || job.NumNodes < 1 {
return fmt.Errorf("'numNodes', 'numAcc' or 'numHWThreads' invalid")
}
if len(job.Resources) != int(job.NumNodes) {
return fmt.Errorf("len(resources) does not equal numNodes (%d vs %d)", len(job.Resources), job.NumNodes)
}
return nil
}
func loadJobStat(job *schema.JobMeta, metric string) float64 {
if stats, ok := job.Statistics[metric]; ok {
return stats.Avg
}
return 0.0
}
func checkJobData(d *schema.JobData) error {
for _, scopes := range *d {
var newUnit string
// Add node scope if missing
for _, metric := range scopes {
if strings.Contains(metric.Unit.Base, "B/s") ||
strings.Contains(metric.Unit.Base, "F/s") ||
strings.Contains(metric.Unit.Base, "B") {
// First get overall avg
sum := 0.0
for _, s := range metric.Series {
sum += s.Statistics.Avg
}
avg := sum / float64(len(metric.Series))
for _, s := range metric.Series {
fp := schema.ConvertFloatToFloat64(s.Data)
// Normalize values with new unit prefix
oldUnit := metric.Unit.Base
units.NormalizeSeries(fp, avg, oldUnit, &newUnit)
s.Data = schema.GetFloat64ToFloat(fp)
}
metric.Unit.Base = newUnit
}
}
}
return nil
}

155
internal/repository/job.go
View File

@ -96,6 +96,35 @@ func scanJob(row interface{ Scan(...interface{}) error }) (*schema.Job, error) {
return job, nil
}
func (r *JobRepository) Flush() error {
var err error
switch r.driver {
case "sqlite3":
if _, err = r.DB.Exec(`DELETE FROM jobtag`); err != nil {
return err
}
if _, err = r.DB.Exec(`DELETE FROM tag`); err != nil {
return err
}
if _, err = r.DB.Exec(`DELETE FROM job`); err != nil {
return err
}
case "mysql":
if _, err = r.DB.Exec(`TRUNCATE TABLE jobtag`); err != nil {
return err
}
if _, err = r.DB.Exec(`TRUNCATE TABLE tag`); err != nil {
return err
}
if _, err = r.DB.Exec(`TRUNCATE TABLE job`); err != nil {
return err
}
}
return nil
}
func (r *JobRepository) FetchJobName(job *schema.Job) (*string, error) {
start := time.Now()
cachekey := fmt.Sprintf("metadata:%d", job.ID)
@ -537,7 +566,7 @@ func (r *JobRepository) FindUserOrProjectOrJobname(ctx context.Context, searchte
func (r *JobRepository) FindColumnValue(user *auth.User, searchterm string, table string, selectColumn string, whereColumn string, isLike bool) (result string, err error) {
compareStr := " = ?"
query := searchterm
if isLike == true {
if isLike {
compareStr = " LIKE ?"
query = "%" + searchterm + "%"
}
@ -695,9 +724,10 @@ func (r *JobRepository) JobsStatistics(ctx context.Context,
stats := map[string]*model.JobsStatistics{}
var castType string
if r.driver == "sqlite3" {
switch r.driver {
case "sqlite3":
castType = "int"
} else if r.driver == "mysql" {
case "mysql":
castType = "unsigned"
}
@ -879,7 +909,6 @@ func (r *JobRepository) jobsStatisticsHistogram(ctx context.Context,
value string, filters []*model.JobFilter, id, col string) ([]*model.HistoPoint, error) {
start := time.Now()
query := sq.Select(value, "COUNT(job.id) AS count").From("job")
query, qerr := SecurityCheck(ctx, sq.Select(value, "COUNT(job.id) AS count").From("job"))
if qerr != nil {
@ -913,3 +942,121 @@ func (r *JobRepository) jobsStatisticsHistogram(ctx context.Context,
log.Infof("Timer jobsStatisticsHistogram %s", time.Since(start))
return points, nil
}
const NamedJobInsert string = `INSERT INTO job (
job_id, user, project, cluster, subcluster, ` + "`partition`" + `, array_job_id, num_nodes, num_hwthreads, num_acc,
exclusive, monitoring_status, smt, job_state, start_time, duration, walltime, resources, meta_data,
mem_used_max, flops_any_avg, mem_bw_avg, load_avg, net_bw_avg, net_data_vol_total, file_bw_avg, file_data_vol_total
) VALUES (
:job_id, :user, :project, :cluster, :subcluster, :partition, :array_job_id, :num_nodes, :num_hwthreads, :num_acc,
:exclusive, :monitoring_status, :smt, :job_state, :start_time, :duration, :walltime, :resources, :meta_data,
:mem_used_max, :flops_any_avg, :mem_bw_avg, :load_avg, :net_bw_avg, :net_data_vol_total, :file_bw_avg, :file_data_vol_total
);`
func (r *JobRepository) InsertJob(job *schema.Job) (int64, error) {
res, err := r.DB.NamedExec(NamedJobInsert, job)
if err != nil {
log.Warn("Error while NamedJobInsert")
return 0, err
}
id, err := res.LastInsertId()
if err != nil {
log.Warn("Error while getting last insert ID")
return 0, err
}
return id, nil
}
type Transaction struct {
tx *sqlx.Tx
stmt *sqlx.NamedStmt
}
func (r *JobRepository) TransactionInit() (*Transaction, error) {
var err error
t := new(Transaction)
// Inserts are bundled into transactions because in sqlite,
// that speeds up inserts A LOT.
t.tx, err = r.DB.Beginx()
if err != nil {
log.Warn("Error while bundling transactions")
return nil, err
}
t.stmt, err = t.tx.PrepareNamed(NamedJobInsert)
if err != nil {
log.Warn("Error while preparing namedJobInsert")
return nil, err
}
return t, nil
}
func (r *JobRepository) TransactionCommit(t *Transaction) error {
var err error
if t.tx != nil {
if err = t.tx.Commit(); err != nil {
log.Warn("Error while committing transactions")
return err
}
}
t.tx, err = r.DB.Beginx()
if err != nil {
log.Warn("Error while bundling transactions")
return err
}
t.stmt = t.tx.NamedStmt(t.stmt)
return nil
}
func (r *JobRepository) TransactionEnd(t *Transaction) error {
if err := t.tx.Commit(); err != nil {
log.Warn("Error while committing SQL transactions")
return err
}
return nil
}
func (r *JobRepository) TransactionAdd(t *Transaction, job schema.Job) (int64, error) {
res, err := t.stmt.Exec(job)
if err != nil {
log.Errorf("repository initDB(): %v", err)
return 0, err
}
id, err := res.LastInsertId()
if err != nil {
log.Errorf("repository initDB(): %v", err)
return 0, err
}
return id, nil
}
func (r *JobRepository) TransactionAddTag(t *Transaction, tag *schema.Tag) (int64, error) {
res, err := t.tx.Exec(`INSERT INTO tag (tag_name, tag_type) VALUES (?, ?)`, tag.Name, tag.Type)
if err != nil {
log.Errorf("Error while inserting tag into tag table: %v (Type %v)", tag.Name, tag.Type)
return 0, err
}
tagId, err := res.LastInsertId()
if err != nil {
log.Warn("Error while getting last insert ID")
return 0, err
}
return tagId, nil
}
func (r *JobRepository) TransactionSetTag(t *Transaction, jobId int64, tagId int64) error {
if _, err := t.tx.Exec(`INSERT INTO jobtag (job_id, tag_id) VALUES (?, ?)`, jobId, tagId); err != nil {
log.Errorf("Error while inserting jobtag into jobtag table: %v (TagID %v)", jobId, tagId)
return err
}
return nil
}

24
internal/repository/job_test.go
View File

@ -12,19 +12,21 @@ import (
_ "github.com/mattn/go-sqlite3"
)
func init() {
log.Init("info", true)
Connect("sqlite3", "../../test/test.db")
}
func setup(t *testing.T) *JobRepository {
log.Init("info", true)
dbfilepath := "testdata/test.db"
err := MigrateDB("sqlite3", dbfilepath)
if err != nil {
t.Fatal(err)
}
Connect("sqlite3", dbfilepath)
return GetJobRepository()
}
func TestFind(t *testing.T) {
r := setup(t)
jobId, cluster, startTime := int64(1404396), "emmy", int64(1609299584)
jobId, cluster, startTime := int64(398998), "fritz", int64(1675957496)
job, err := r.Find(&jobId, &cluster, &startTime)
if err != nil {
t.Fatal(err)
@ -32,7 +34,7 @@ func TestFind(t *testing.T) {
// fmt.Printf("%+v", job)
if job.ID != 1366 {
if job.ID != 5 {
t.Errorf("wrong summary for diagnostic 3\ngot: %d \nwant: 1366", job.JobID)
}
}
@ -40,14 +42,14 @@ func TestFind(t *testing.T) {
func TestFindById(t *testing.T) {
r := setup(t)
job, err := r.FindById(1366)
job, err := r.FindById(5)
if err != nil {
t.Fatal(err)
}
// fmt.Printf("%+v", job)
if job.JobID != 1404396 {
if job.JobID != 398998 {
t.Errorf("wrong summary for diagnostic 3\ngot: %d \nwant: 1404396", job.JobID)
}
}
@ -63,7 +65,7 @@ func TestGetTags(t *testing.T) {
fmt.Printf("TAGS %+v \n", tags)
// fmt.Printf("COUNTS %+v \n", counts)
if counts["bandwidth"] != 6 {
t.Errorf("wrong summary for diagnostic 3\ngot: %d \nwant: 6", counts["load-imbalance"])
if counts["bandwidth"] != 3 {
t.Errorf("wrong tag count \ngot: %d \nwant: 3", counts["bandwidth"])
}
}

47
internal/repository/migration.go
View File

@ -8,7 +8,6 @@ import (
"database/sql"
"embed"
"fmt"
"os"
"github.com/ClusterCockpit/cc-backend/pkg/log"
"github.com/golang-migrate/migrate/v4"
@ -22,37 +21,37 @@ const Version uint = 3
//go:embed migrations/*
var migrationFiles embed.FS
func checkDBVersion(backend string, db *sql.DB) {
func checkDBVersion(backend string, db *sql.DB) error {
var m *migrate.Migrate
if backend == "sqlite3" {
switch backend {
case "sqlite3":
driver, err := sqlite3.WithInstance(db, &sqlite3.Config{})
if err != nil {
log.Fatal(err)
return err
}
d, err := iofs.New(migrationFiles, "migrations/sqlite3")
if err != nil {
log.Fatal(err)
return err
}
m, err = migrate.NewWithInstance("iofs", d, "sqlite3", driver)
if err != nil {
log.Fatal(err)
return err
}
} else if backend == "mysql" {
case "mysql":
driver, err := mysql.WithInstance(db, &mysql.Config{})
if err != nil {
log.Fatal(err)
return err
}
d, err := iofs.New(migrationFiles, "migrations/mysql")
if err != nil {
log.Fatal(err)
return err
}
m, err = migrate.NewWithInstance("iofs", d, "mysql", driver)
if err != nil {
log.Fatal(err)
return err
}
}
@ -61,25 +60,26 @@ func checkDBVersion(backend string, db *sql.DB) {
if err == migrate.ErrNilVersion {
log.Warn("Legacy database without version or missing database file!")
} else {
log.Fatal(err)
return err
}
}
if v < Version {
log.Warnf("Unsupported database version %d, need %d.\nPlease backup your database file and run cc-backend --migrate-db", v, Version)
os.Exit(0)
return fmt.Errorf("unsupported database version %d, need %d.\nPlease backup your database file and run cc-backend --migrate-db", v, Version)
}
if v > Version {
log.Warnf("Unsupported database version %d, need %d.\nPlease refer to documentation how to downgrade db with external migrate tool!", v, Version)
os.Exit(0)
return fmt.Errorf("unsupported database version %d, need %d.\nPlease refer to documentation how to downgrade db with external migrate tool", v, Version)
}
return nil
}
func MigrateDB(backend string, db string) {
func MigrateDB(backend string, db string) error {
var m *migrate.Migrate
if backend == "sqlite3" {
switch backend {
case "sqlite3":
d, err := iofs.New(migrationFiles, "migrations/sqlite3")
if err != nil {
log.Fatal(err)
@ -87,17 +87,17 @@ func MigrateDB(backend string, db string) {
m, err = migrate.NewWithSourceInstance("iofs", d, fmt.Sprintf("sqlite3://%s?_foreign_keys=on", db))
if err != nil {
log.Fatal(err)
return err
}
} else if backend == "mysql" {
case "mysql":
d, err := iofs.New(migrationFiles, "migrations/mysql")
if err != nil {
log.Fatal(err)
return err
}
m, err = migrate.NewWithSourceInstance("iofs", d, fmt.Sprintf("mysql://%s?multiStatements=true", db))
if err != nil {
log.Fatal(err)
return err
}
}
@ -105,9 +105,10 @@ func MigrateDB(backend string, db string) {
if err == migrate.ErrNoChange {
log.Info("DB already up to date!")
} else {
log.Fatal(err)
return err
}
}
m.Close()
return nil
}

6
internal/repository/migrations/mysql/01_init-schema.up.sql
View File

@ -31,13 +31,15 @@ CREATE TABLE IF NOT EXISTS job (
net_bw_avg REAL NOT NULL DEFAULT 0.0,
net_data_vol_total REAL NOT NULL DEFAULT 0.0,
file_bw_avg REAL NOT NULL DEFAULT 0.0,
file_data_vol_total REAL NOT NULL DEFAULT 0.0);
file_data_vol_total REAL NOT NULL DEFAULT 0.0,
UNIQUE (job_id, cluster, start_time)
);
CREATE TABLE IF NOT EXISTS tag (
id INTEGER PRIMARY KEY,
tag_type VARCHAR(255) NOT NULL,
tag_name VARCHAR(255) NOT NULL,
CONSTRAINT be_unique UNIQUE (tag_type, tag_name));
UNIQUE (tag_type, tag_name));
CREATE TABLE IF NOT EXISTS jobtag (
job_id INTEGER,

20
internal/repository/migrations/sqlite3/01_init-schema.up.sql
View File

@ -7,19 +7,19 @@ CREATE TABLE IF NOT EXISTS job (
user VARCHAR(255) NOT NULL,
project VARCHAR(255) NOT NULL,
partition VARCHAR(255) NOT NULL,
array_job_id BIGINT NOT NULL,
duration INT NOT NULL DEFAULT 0,
walltime INT NOT NULL DEFAULT 0,
job_state VARCHAR(255) NOT NULL
partition VARCHAR(255),
array_job_id BIGINT,
duration INT NOT NULL,
walltime INT NOT NULL,
job_state VARCHAR(255) NOT NULL
CHECK(job_state IN ('running', 'completed', 'failed', 'cancelled',
'stopped', 'timeout', 'preempted', 'out_of_memory')),
meta_data TEXT, -- JSON
resources TEXT NOT NULL, -- JSON
num_nodes INT NOT NULL,
num_hwthreads INT NOT NULL,
num_acc INT NOT NULL,
num_hwthreads INT,
num_acc INT,
smt TINYINT NOT NULL DEFAULT 1 CHECK(smt IN (0, 1 )),
exclusive TINYINT NOT NULL DEFAULT 1 CHECK(exclusive IN (0, 1, 2)),
monitoring_status TINYINT NOT NULL DEFAULT 1 CHECK(monitoring_status IN (0, 1, 2, 3)),
@ -31,13 +31,15 @@ CREATE TABLE IF NOT EXISTS job (
net_bw_avg REAL NOT NULL DEFAULT 0.0,
net_data_vol_total REAL NOT NULL DEFAULT 0.0,
file_bw_avg REAL NOT NULL DEFAULT 0.0,
file_data_vol_total REAL NOT NULL DEFAULT 0.0);
file_data_vol_total REAL NOT NULL DEFAULT 0.0,
UNIQUE (job_id, cluster, start_time)
);
CREATE TABLE IF NOT EXISTS tag (
id INTEGER PRIMARY KEY,
tag_type VARCHAR(255) NOT NULL,
tag_name VARCHAR(255) NOT NULL,
CONSTRAINT be_unique UNIQUE (tag_type, tag_name));
UNIQUE (tag_type, tag_name));
CREATE TABLE IF NOT EXISTS jobtag (
job_id INTEGER,

10
internal/repository/query.go
View File

@ -34,11 +34,13 @@ func (r *JobRepository) QueryJobs(
if order != nil {
field := toSnakeCase(order.Field)
if order.Order == model.SortDirectionEnumAsc {
switch order.Order {
case model.SortDirectionEnumAsc:
query = query.OrderBy(fmt.Sprintf("job.%s ASC", field))
} else if order.Order == model.SortDirectionEnumDesc {
case model.SortDirectionEnumDesc:
query = query.OrderBy(fmt.Sprintf("job.%s DESC", field))
} else {
default:
return nil, errors.New("REPOSITORY/QUERY > invalid sorting order")
}
}
@ -117,7 +119,7 @@ func SecurityCheck(ctx context.Context, query sq.SelectBuilder) (queryOut sq.Sel
return query.Where("job.user = ?", user.Username), nil
} else { // Unauthorized : Error
var qnil sq.SelectBuilder
return qnil, errors.New(fmt.Sprintf("User '%s' with unknown roles! [%#v]\n", user.Username, user.Roles))
return qnil, fmt.Errorf("user '%s' with unknown roles [%#v]", user.Username, user.Roles)
}
}

BIN
internal/repository/testdata/test.db vendored Normal file
View File

Binary file not shown.

25
internal/repository/user_test.go
View File

@ -11,12 +11,10 @@ import (
"github.com/ClusterCockpit/cc-backend/internal/auth"
"github.com/ClusterCockpit/cc-backend/internal/config"
"github.com/ClusterCockpit/cc-backend/pkg/log"
_ "github.com/mattn/go-sqlite3"
)
func init() {
Connect("sqlite3", "../../test/test.db")
}
func setupUserTest(t *testing.T) *UserCfgRepo {
const testconfig = `{
"addr": "0.0.0.0:8080",
@ -34,6 +32,15 @@ func setupUserTest(t *testing.T) *UserCfgRepo {
"startTime": { "from": "2022-01-01T00:00:00Z", "to": null }
} } ]
}`
log.Init("info", true)
dbfilepath := "testdata/test.db"
err := MigrateDB("sqlite3", dbfilepath)
if err != nil {
t.Fatal(err)
}
Connect("sqlite3", dbfilepath)
tmpdir := t.TempDir()
cfgFilePath := filepath.Join(tmpdir, "config.json")
if err := os.WriteFile(cfgFilePath, []byte(testconfig), 0666); err != nil {
@ -43,9 +50,10 @@ func setupUserTest(t *testing.T) *UserCfgRepo {
config.Init(cfgFilePath)
return GetUserCfgRepo()
}
func TestGetUIConfig(t *testing.T) {
r := setupUserTest(t)
u := auth.User{Username: "jan"}
u := auth.User{Username: "demo"}
cfg, err := r.GetUIConfig(&u)
if err != nil {
@ -53,10 +61,9 @@ func TestGetUIConfig(t *testing.T) {
}
tmp := cfg["plot_list_selectedMetrics"]
metrics := tmp.([]interface{})
str := metrics[2].(string)
if str != "mem_bw" {
metrics := tmp.([]string)
str := metrics[2]
if str != "mem_used" {
t.Errorf("wrong config\ngot: %s \nwant: mem_bw", str)
}
}

22
pkg/archive/fsBackend_test.go
View File

@ -20,7 +20,7 @@ func init() {
func TestInitEmptyPath(t *testing.T) {
var fsa FsArchive
_, err := fsa.Init(json.RawMessage("{\"kind\":\"../../test/archive\"}"))
_, err := fsa.Init(json.RawMessage("{\"kind\":\"testdata/archive\"}"))
if err == nil {
t.Fatal(err)
}
@ -28,14 +28,14 @@ func TestInitEmptyPath(t *testing.T) {
func TestInitNoJson(t *testing.T) {
var fsa FsArchive
_, err := fsa.Init(json.RawMessage("\"path\":\"../../test/archive\"}"))
_, err := fsa.Init(json.RawMessage("\"path\":\"testdata/archive\"}"))
if err == nil {
t.Fatal(err)
}
}
func TestInitNotExists(t *testing.T) {
var fsa FsArchive
_, err := fsa.Init(json.RawMessage("{\"path\":\"../../test/job-archive\"}"))
_, err := fsa.Init(json.RawMessage("{\"path\":\"testdata/job-archive\"}"))
if err == nil {
t.Fatal(err)
}
@ -43,11 +43,11 @@ func TestInitNotExists(t *testing.T) {
func TestInit(t *testing.T) {
var fsa FsArchive
version, err := fsa.Init(json.RawMessage("{\"path\":\"../../test/archive\"}"))
version, err := fsa.Init(json.RawMessage("{\"path\":\"testdata/archive\"}"))
if err != nil {
t.Fatal(err)
}
if fsa.path != "../../test/archive" {
if fsa.path != "testdata/archive" {
t.Fail()
}
if version != 1 {
@ -60,12 +60,12 @@ func TestInit(t *testing.T) {
func TestLoadJobMetaInternal(t *testing.T) {
var fsa FsArchive
_, err := fsa.Init(json.RawMessage("{\"path\":\"../../test/archive\"}"))
_, err := fsa.Init(json.RawMessage("{\"path\":\"testdata/archive\"}"))
if err != nil {
t.Fatal(err)
}
job, err := loadJobMeta("../../test/archive/emmy/1404/397/1609300556/meta.json")
job, err := loadJobMeta("testdata/archive/emmy/1404/397/1609300556/meta.json")
if err != nil {
t.Fatal(err)
}
@ -83,7 +83,7 @@ func TestLoadJobMetaInternal(t *testing.T) {
func TestLoadJobMeta(t *testing.T) {
var fsa FsArchive
_, err := fsa.Init(json.RawMessage("{\"path\":\"../../test/archive\"}"))
_, err := fsa.Init(json.RawMessage("{\"path\":\"testdata/archive\"}"))
if err != nil {
t.Fatal(err)
}
@ -111,7 +111,7 @@ func TestLoadJobMeta(t *testing.T) {
func TestLoadJobData(t *testing.T) {
var fsa FsArchive
_, err := fsa.Init(json.RawMessage("{\"path\":\"../../test/archive\"}"))
_, err := fsa.Init(json.RawMessage("{\"path\":\"testdata/archive\"}"))
if err != nil {
t.Fatal(err)
}
@ -137,7 +137,7 @@ func TestLoadJobData(t *testing.T) {
func TestLoadCluster(t *testing.T) {
var fsa FsArchive
_, err := fsa.Init(json.RawMessage("{\"path\":\"../../test/archive\"}"))
_, err := fsa.Init(json.RawMessage("{\"path\":\"testdata/archive\"}"))
if err != nil {
t.Fatal(err)
}
@ -154,7 +154,7 @@ func TestLoadCluster(t *testing.T) {
func TestIter(t *testing.T) {
var fsa FsArchive
_, err := fsa.Init(json.RawMessage("{\"path\":\"../../test/archive\"}"))
_, err := fsa.Init(json.RawMessage("{\"path\":\"testdata/archive\"}"))
if err != nil {
t.Fatal(err)
}

0
test/archive/emmy/1403/244/1608923076/data.json.gz → pkg/archive/testdata/archive/emmy/1403/244/1608923076/data.json.gz vendored
View File

0
test/archive/emmy/1403/244/1608923076/meta.json → pkg/archive/testdata/archive/emmy/1403/244/1608923076/meta.json vendored
View File

0
test/archive/emmy/1404/397/1609300556/data.json.gz → pkg/archive/testdata/archive/emmy/1404/397/1609300556/data.json.gz vendored
View File

0
test/archive/emmy/1404/397/1609300556/meta.json → pkg/archive/testdata/archive/emmy/1404/397/1609300556/meta.json vendored
View File

0
test/archive/emmy/cluster.json → pkg/archive/testdata/archive/emmy/cluster.json vendored
View File

0
test/archive/version.txt → pkg/archive/testdata/archive/version.txt vendored
View File

47
pkg/schema/job.go
View File

@ -11,8 +11,9 @@ import (
"time"
)
// Non-Swaggered Comment: BaseJob
// Non-Swaggered Comment: Common subset of Job and JobMeta. Use one of those, not this type directly.
// BaseJob is the common part of the job metadata structs
//
// Common subset of Job and JobMeta. Use one of those, not this type directly.
type BaseJob struct {
// The unique identifier of a job
@ -21,17 +22,17 @@ type BaseJob struct {
Project string `json:"project" db:"project" example:"abcd200"` // The unique identifier of a project
Cluster string `json:"cluster" db:"cluster" example:"fritz"` // The unique identifier of a cluster
SubCluster string `json:"subCluster" db:"subcluster" example:"main"` // The unique identifier of a sub cluster
Partition *string `json:"partition,omitempty" db:"partition" example:"main"` // The Slurm partition to which the job was submitted
ArrayJobId *int64 `json:"arrayJobId,omitempty" db:"array_job_id" example:"123000"` // The unique identifier of an array job
Partition string `json:"partition,omitempty" db:"partition" example:"main"` // The Slurm partition to which the job was submitted
ArrayJobId int64 `json:"arrayJobId,omitempty" db:"array_job_id" example:"123000"` // The unique identifier of an array job
NumNodes int32 `json:"numNodes" db:"num_nodes" example:"2" minimum:"1"` // Number of nodes used (Min > 0)
NumHWThreads *int32 `json:"numHwthreads,omitempty" db:"num_hwthreads" example:"20" minimum:"1"` // Number of HWThreads used (Min > 0)
NumAcc *int32 `json:"numAcc,omitempty" db:"num_acc" example:"2" minimum:"1"` // Number of accelerators used (Min > 0)
NumHWThreads int32 `json:"numHwthreads,omitempty" db:"num_hwthreads" example:"20" minimum:"1"` // Number of HWThreads used (Min > 0)
NumAcc int32 `json:"numAcc,omitempty" db:"num_acc" example:"2" minimum:"1"` // Number of accelerators used (Min > 0)
Exclusive int32 `json:"exclusive" db:"exclusive" example:"1" minimum:"0" maximum:"2"` // Specifies how nodes are shared: 0 - Shared among multiple jobs of multiple users, 1 - Job exclusive (Default), 2 - Shared among multiple jobs of same user
MonitoringStatus int32 `json:"monitoringStatus,omitempty" db:"monitoring_status" example:"1" minimum:"0" maximum:"3"` // State of monitoring system during job run: 0 - Disabled, 1 - Running or Archiving (Default), 2 - Archiving Failed, 3 - Archiving Successfull
SMT *int32 `json:"smt,omitempty" db:"smt" example:"4"` // SMT threads used by job
SMT int32 `json:"smt,omitempty" db:"smt" example:"4"` // SMT threads used by job
State JobState `json:"jobState" db:"job_state" example:"completed" enums:"completed,failed,cancelled,stopped,timeout,out_of_memory"` // Final state of job
Duration int32 `json:"duration" db:"duration" example:"43200" minimum:"1"` // Duration of job in seconds (Min > 0)
Walltime *int64 `json:"walltime,omitempty" db:"walltime" example:"86400" minimum:"1"` // Requested walltime of job in seconds (Min > 0)
Walltime int64 `json:"walltime,omitempty" db:"walltime" example:"86400" minimum:"1"` // Requested walltime of job in seconds (Min > 0)
Tags []*Tag `json:"tags,omitempty"` // List of tags
RawResources []byte `json:"-" db:"resources"` // Resources used by job [As Bytes]
Resources []*Resource `json:"resources"` // Resources used by job
@ -39,9 +40,10 @@ type BaseJob struct {
MetaData map[string]string `json:"metaData"` // Additional information about the job
}
// Non-Swaggered Comment: Job
// Non-Swaggered Comment: This type is used as the GraphQL interface and using sqlx as a table row.
// Job struct type
//
// This type is used as the GraphQL interface and using sqlx as a table row.
//
// Job model
// @Description Information of a HPC job.
type Job struct {
@ -60,13 +62,16 @@ type Job struct {
FileDataVolTotal float64 `json:"-" db:"file_data_vol_total"` // FileDataVolTotal as Float64
}
// Non-Swaggered Comment: JobMeta
// Non-Swaggered Comment: When reading from the database or sending data via GraphQL, the start time can be in the much more
// Non-Swaggered Comment: convenient time.Time type. In the `meta.json` files, the start time is encoded as a unix epoch timestamp.
// Non-Swaggered Comment: This is why there is this struct, which contains all fields from the regular job struct, but "overwrites"
// Non-Swaggered Comment: the StartTime field with one of type int64.
// Non-Swaggered Comment: ID *int64 `json:"id,omitempty"` >> never used in the job-archive, only available via REST-API
// JobMeta struct type
//
// When reading from the database or sending data via GraphQL, the start time
// can be in the much more convenient time.Time type. In the `meta.json`
// files, the start time is encoded as a unix epoch timestamp. This is why
// there is this struct, which contains all fields from the regular job
// struct, but "overwrites" the StartTime field with one of type int64. ID
// *int64 `json:"id,omitempty"` >> never used in the job-archive, only
// available via REST-API
//
// JobMeta model
// @Description Meta data information of a HPC job.
type JobMeta struct {
@ -74,7 +79,7 @@ type JobMeta struct {
ID *int64 `json:"id,omitempty"`
BaseJob
StartTime int64 `json:"startTime" db:"start_time" example:"1649723812" minimum:"1"` // Start epoch time stamp in seconds (Min > 0)
Statistics map[string]JobStatistics `json:"statistics,omitempty"` // Metric statistics of job
Statistics map[string]JobStatistics `json:"statistics"` // Metric statistics of job
}
const (
@ -90,8 +95,8 @@ var JobDefaults BaseJob = BaseJob{
}
type Unit struct {
Base string `json:"base"`
Prefix *string `json:"prefix,omitempty"`
Base string `json:"base"`
Prefix string `json:"prefix,omitempty"`
}
// JobStatistics model

175
pkg/units/README.md
View File

@ -1,175 +0,0 @@
# cc-units - A unit system for ClusterCockpit
When working with metrics, the problem comes up that they may use different unit name but have the same unit in fact.
There are a lot of real world examples like 'kB' and 'Kbyte'. In [cc-metric-collector](https://github.com/ClusterCockpit/cc-metric-collector), the collectors read data from different sources which may use different units or the programmer specifies a unit for a metric by hand. The cc-units system is not comparable with the SI unit system. If you are looking for a package for the SI units, see [here](https://pkg.go.dev/github.com/gurre/si).
In order to enable unit comparison and conversion, the ccUnits package provides some helpers:
```go
NewUnit(unit string) Unit // create a new unit from some string like 'GHz', 'Mbyte' or 'kevents/s'
func GetUnitUnitFactor(in Unit, out Unit) (func(value float64) float64, error) // Get conversion function between two units
func GetPrefixFactor(in Prefix, out Prefix) func(value float64) float64 // Get conversion function between two prefixes
func GetUnitPrefixFactor(in Unit, out Prefix) (func(value float64) float64, Unit) // Get conversion function for prefix changes and the new unit for further use
type Unit interface {
Valid() bool
String() string
Short() string
AddUnitDenominator(div Measure)
}
```
In order to get the "normalized" string unit back or test for validity, you can use:
```go
u := NewUnit("MB")
fmt.Println(u.Valid()) // true
fmt.Printf("Long string %q", u.String()) // MegaBytes
fmt.Printf("Short string %q", u.Short()) // MBytes
v := NewUnit("foo")
fmt.Println(v.Valid()) // false
```
If you have two units or other components and need the conversion function:
```go
// Get conversion functions for 'kB' to 'MBytes'
u1 := NewUnit("kB")
u2 := NewUnit("MBytes")
convFunc, err := GetUnitUnitFactor(u1, u2) // Returns an error if the units have different measures
if err == nil {
v2 := convFunc(v1)
fmt.Printf("%f %s\n", v2, u2.Short())
}
// Get conversion function for 'kB' -> 'G' prefix.
// Returns the function and the new unit 'GBytes'
p1 := NewPrefix("G")
convFunc, u_p1 := GetUnitPrefixFactor(u1, p1)
// or
// convFunc, u_p1 := GetUnitPrefixStringFactor(u1, "G")
if convFunc != nil {
v2 := convFunc(v1)
fmt.Printf("%f %s\n", v2, u_p1.Short())
}
// Get conversion function for two prefixes: 'G' -> 'T'
p2 := NewPrefix("T")
convFunc = GetPrefixPrefixFactor(p1, p2)
if convFunc != nil {
v2 := convFunc(v1)
fmt.Printf("%f %s -> %f %s\n", v1, p1.Prefix(), v2, p2.Prefix())
}
```
(In the ClusterCockpit ecosystem the separation between values and units if useful since they are commonly not stored as a single entity but the value is a field in the CCMetric while unit is a tag or a meta information).
If you have a metric and want the derivation to a bandwidth or events per second, you can use the original unit:
```go
in_unit, err := metric.GetMeta("unit")
if err == nil {
value, ok := metric.GetField("value")
if ok {
out_unit = NewUnit(in_unit)
out_unit.AddUnitDenominator("seconds")
seconds := timeDiff.Seconds()
y, err := lp.New(metric.Name()+"_bw",
metric.Tags(),
metric.Meta(),
map[string]interface{"value": value/seconds},
metric.Time())
if err == nil {
y.AddMeta("unit", out_unit.Short())
}
}
}
```
## Special unit detection
Some used measures like Bytes and Flops are non-dividable. Consequently there prefixes like Milli, Micro and Nano are not useful. This is quite handy since a unit `mb` for `MBytes` is not uncommon but would by default be parsed as "MilliBytes".
Special parsing rules for the following measures: iff `prefix==Milli`, use `prefix==Mega`
- `Bytes`
- `Flops`
- `Packets`
- `Events`
- `Cycles`
- `Requests`
This means the prefixes `Micro` (like `ubytes`) and `Nano` like (`nflops/sec`) are not allowed and return an invalid unit. But you can specify `mflops` and `mb`.
Prefixes for `%` or `percent` are ignored.
## Supported prefixes
```go
const (
Base Prefix = 1
Exa = 1e18
Peta = 1e15
Tera = 1e12
Giga = 1e9
Mega = 1e6
Kilo = 1e3
Milli = 1e-3
Micro = 1e-6
Nano = 1e-9
Kibi = 1024
Mebi = 1024 * 1024
Gibi = 1024 * 1024 * 1024
Tebi = 1024 * 1024 * 1024 * 1024
)
```
The prefixes are detected using a regular expression `^([kKmMgGtTpP]?[i]?)(.*)` that splits the prefix from the measure. You probably don't need to deal with the prefixes in the code.
## Supported measures
```go
const (
None Measure = iota
Bytes
Flops
Percentage
TemperatureC
TemperatureF
Rotation
Hertz
Time
Watt
Joule
Cycles
Requests
Packets
Events
)
```
There a regular expression for each of the measures like `^([bB][yY]?[tT]?[eE]?[sS]?)` for the `Bytes` measure.
## New units
If the selected units are not suitable for your metric, feel free to send a PR.
### New prefix
For a new prefix, add it to the big `const` in `ccUnitPrefix.go` and adjust the prefix-unit-splitting regular expression. Afterwards, you have to add cases to the three functions `String()`, `Prefix()` and `NewPrefix()`. `NewPrefix()` contains the parser (`k` or `K` -> `Kilo`). The other one are used for output. `String()` outputs a longer version of the prefix (`Kilo`), while `Prefix()` returns only the short notation (`K`).
### New measure
Adding new prefixes is probably rare but adding a new measure is a more common task. At first, add it to the big `const` in `ccUnitMeasure.go`. Moreover, create a regular expression matching the measure (and pre-compile it like the others). Add the expression matching to `NewMeasure()`. The `String()` and `Short()` functions return descriptive strings for the measure in long form (like `Hertz`) and short form (like `Hz`).
If there are special conversation rules between measures and you want to convert one measure to another, like temperatures in Celsius to Fahrenheit, a special case in `GetUnitPrefixFactor()` is required.
### Special parsing rules
The two parsers for prefix and measure are called under the hood by `NewUnit()` and there might some special rules apply. Like in the above section about 'special unit detection', special rules for your new measure might be required. Currently there are two special cases:
- Measures that are non-dividable like Flops, Bytes, Events, ... cannot use `Milli`, `Micro` and `Nano`. The prefix `m` is forced to `M` for these measures
- If the prefix is `p`/`P` (`Peta`) or `e`/`E` (`Exa`) and the measure is not detectable, it retries detection with the prefix. So first round it tries, for example, prefix `p` and measure `ackets` which fails, so it retries the detection with measure `packets` and `<empty>` prefix (resolves to `Base` prefix).
## Limitations
The `ccUnits` package is a simple implemtation of a unit system and comes with some limitations:
- The unit denominator (like `s` in `Mbyte/s`) can only have the `Base` prefix, you cannot specify `Byte/ms` for "Bytes per milli second".

134
pkg/units/unitMeasure.go
View File

@ -1,134 +0,0 @@
package units
import "regexp"
type Measure int
const (
InvalidMeasure Measure = iota
Bytes
Flops
Percentage
TemperatureC
TemperatureF
Rotation
Frequency
Time
Watt
Joule
Cycles
Requests
Packets
Events
)
type MeasureData struct {
Long string
Short string
Regex string
}
// Different names and regex used for input and output
var InvalidMeasureLong string = "Invalid"
var InvalidMeasureShort string = "inval"
var MeasuresMap map[Measure]MeasureData = map[Measure]MeasureData{
Bytes: {
Long: "byte",
Short: "B",
Regex: "^([bB][yY]?[tT]?[eE]?[sS]?)",
},
Flops: {
Long: "Flops",
Short: "F",
Regex: "^([fF][lL]?[oO]?[pP]?[sS]?)",
},
Percentage: {
Long: "Percent",
Short: "%",
Regex: "^(%|[pP]ercent)",
},
TemperatureC: {
Long: "DegreeC",
Short: "degC",
Regex: "^(deg[Cc]|°[cC])",
},
TemperatureF: {
Long: "DegreeF",
Short: "degF",
Regex: "^(deg[fF]|°[fF])",
},
Rotation: {
Long: "RPM",
Short: "RPM",
Regex: "^([rR][pP][mM])",
},
Frequency: {
Long: "Hertz",
Short: "Hz",
Regex: "^([hH][eE]?[rR]?[tT]?[zZ])",
},
Time: {
Long: "Seconds",
Short: "s",
Regex: "^([sS][eE]?[cC]?[oO]?[nN]?[dD]?[sS]?)",
},
Cycles: {
Long: "Cycles",
Short: "cyc",
Regex: "^([cC][yY][cC]?[lL]?[eE]?[sS]?)",
},
Watt: {
Long: "Watts",
Short: "W",
Regex: "^([wW][aA]?[tT]?[tT]?[sS]?)",
},
Joule: {
Long: "Joules",
Short: "J",
Regex: "^([jJ][oO]?[uU]?[lL]?[eE]?[sS]?)",
},
Requests: {
Long: "Requests",
Short: "requests",
Regex: "^([rR][eE][qQ][uU]?[eE]?[sS]?[tT]?[sS]?)",
},
Packets: {
Long: "Packets",
Short: "packets",
Regex: "^([pP][aA]?[cC]?[kK][eE]?[tT][sS]?)",
},
Events: {
Long: "Events",
Short: "events",
Regex: "^([eE][vV]?[eE]?[nN][tT][sS]?)",
},
}
// String returns the long string for the measure like 'Percent' or 'Seconds'
func (m *Measure) String() string {
if data, ok := MeasuresMap[*m]; ok {
return data.Long
}
return InvalidMeasureLong
}
// Short returns the short string for the measure like 'B' (Bytes), 's' (Time) or 'W' (Watt). Is is recommened to use Short() over String().
func (m *Measure) Short() string {
if data, ok := MeasuresMap[*m]; ok {
return data.Short
}
return InvalidMeasureShort
}
// NewMeasure creates a new measure out of a string representing a measure like 'Bytes', 'Flops' and 'precent'.
// It uses regular expressions for matching.
func NewMeasure(unit string) Measure {
for m, data := range MeasuresMap {
regex := regexp.MustCompile(data.Regex)
match := regex.FindStringSubmatch(unit)
if match != nil {
return m
}
}
return InvalidMeasure
}

192
pkg/units/unitPrefix.go
View File

@ -1,192 +0,0 @@
package units
import (
"math"
"regexp"
)
type Prefix float64
const (
InvalidPrefix Prefix = iota
Base = 1
Yotta = 1e24
Zetta = 1e21
Exa = 1e18
Peta = 1e15
Tera = 1e12
Giga = 1e9
Mega = 1e6
Kilo = 1e3
Milli = 1e-3
Micro = 1e-6
Nano = 1e-9
Kibi = 1024
Mebi = 1024 * 1024
Gibi = 1024 * 1024 * 1024
Tebi = 1024 * 1024 * 1024 * 1024
Pebi = 1024 * 1024 * 1024 * 1024 * 1024
Exbi = 1024 * 1024 * 1024 * 1024 * 1024 * 1024
Zebi = 1024 * 1024 * 1024 * 1024 * 1024 * 1024 * 1024
Yobi = 1024 * 1024 * 1024 * 1024 * 1024 * 1024 * 1024 * 1024
)
const PrefixUnitSplitRegexStr = `^([kKmMgGtTpPeEzZyY]?[i]?)(.*)`
var prefixUnitSplitRegex = regexp.MustCompile(PrefixUnitSplitRegexStr)
type PrefixData struct {
Long string
Short string
Regex string
}
// Different names and regex used for input and output
var InvalidPrefixLong string = "Invalid"
var InvalidPrefixShort string = "inval"
var PrefixDataMap map[Prefix]PrefixData = map[Prefix]PrefixData{
Base: {
Long: "",
Short: "",
Regex: "^$",
},
Kilo: {
Long: "Kilo",
Short: "K",
Regex: "^[kK]$",
},
Mega: {
Long: "Mega",
Short: "M",
Regex: "^[M]$",
},
Giga: {
Long: "Giga",
Short: "G",
Regex: "^[gG]$",
},
Tera: {
Long: "Tera",
Short: "T",
Regex: "^[tT]$",
},
Peta: {
Long: "Peta",
Short: "P",
Regex: "^[pP]$",
},
Exa: {
Long: "Exa",
Short: "E",
Regex: "^[eE]$",
},
Zetta: {
Long: "Zetta",
Short: "Z",
Regex: "^[zZ]$",
},
Yotta: {
Long: "Yotta",
Short: "Y",
Regex: "^[yY]$",
},
Milli: {
Long: "Milli",
Short: "m",
Regex: "^[m]$",
},
Micro: {
Long: "Micro",
Short: "u",
Regex: "^[u]$",
},
Nano: {
Long: "Nano",
Short: "n",
Regex: "^[n]$",
},
Kibi: {
Long: "Kibi",
Short: "Ki",
Regex: "^[kK][i]$",
},
Mebi: {
Long: "Mebi",
Short: "Mi",
Regex: "^[M][i]$",
},
Gibi: {
Long: "Gibi",
Short: "Gi",
Regex: "^[gG][i]$",
},
Tebi: {
Long: "Tebi",
Short: "Ti",
Regex: "^[tT][i]$",
},
Pebi: {
Long: "Pebi",
Short: "Pi",
Regex: "^[pP][i]$",
},
Exbi: {
Long: "Exbi",
Short: "Ei",
Regex: "^[eE][i]$",
},
Zebi: {
Long: "Zebi",
Short: "Zi",
Regex: "^[zZ][i]$",
},
Yobi: {
Long: "Yobi",
Short: "Yi",
Regex: "^[yY][i]$",
},
}
// String returns the long string for the prefix like 'Kilo' or 'Mega'
func (p *Prefix) String() string {
if data, ok := PrefixDataMap[*p]; ok {
return data.Long
}
return InvalidMeasureLong
}
// Prefix returns the short string for the prefix like 'K', 'M' or 'G'. Is is recommened to use Prefix() over String().
func (p *Prefix) Prefix() string {
if data, ok := PrefixDataMap[*p]; ok {
return data.Short
}
return InvalidMeasureShort
}
// NewPrefix creates a new prefix out of a string representing a unit like 'k', 'K', 'M' or 'G'.
func NewPrefix(prefix string) Prefix {
for p, data := range PrefixDataMap {
regex := regexp.MustCompile(data.Regex)
match := regex.FindStringSubmatch(prefix)
if match != nil {
return p
}
}
return InvalidPrefix
}
func getExponent(p float64) int {
count := 0
for p > 1.0 {
p = p / 1000.0
count++
}
return count * 3
}
func NewPrefixFromFactor(op Prefix, e int) Prefix {
f := float64(op)
exp := math.Pow10(getExponent(f) - e)
return Prefix(exp)
}

339
pkg/units/units.go
View File

@ -1,339 +0,0 @@
// Unit system for cluster monitoring metrics like bytes, flops and events
package units
import (
"fmt"
"math"
"strings"
"github.com/ClusterCockpit/cc-backend/pkg/schema"
)
type unit struct {
prefix Prefix
measure Measure
divMeasure Measure
}
type Unit interface {
Valid() bool
String() string
Short() string
AddUnitDenominator(div Measure)
getPrefix() Prefix
getMeasure() Measure
getUnitDenominator() Measure
setPrefix(p Prefix)
}
var INVALID_UNIT = NewUnit("foobar")
// Valid checks whether a unit is a valid unit.
// A unit is valid if it has at least a prefix and a measure.
// The unit denominator is optional.
func (u *unit) Valid() bool {
return u.prefix != InvalidPrefix && u.measure != InvalidMeasure
}
// String returns the long string for the unit like 'KiloHertz' or 'MegaBytes'
func (u *unit) String() string {
if u.divMeasure != InvalidMeasure {
return fmt.Sprintf("%s%s/%s", u.prefix.String(), u.measure.String(), u.divMeasure.String())
} else {
return fmt.Sprintf("%s%s", u.prefix.String(), u.measure.String())
}
}
// Short returns the short string for the unit like 'kHz' or 'MByte'. Is is recommened to use Short() over String().
func (u *unit) Short() string {
if u.divMeasure != InvalidMeasure {
return fmt.Sprintf("%s%s/%s", u.prefix.Prefix(), u.measure.Short(), u.divMeasure.Short())
} else {
return fmt.Sprintf("%s%s", u.prefix.Prefix(), u.measure.Short())
}
}
// AddUnitDenominator adds a unit denominator to an exising unit. Can be used if you want to derive e.g. data volume to bandwidths.
// The data volume is in a Byte unit like 'kByte' and by dividing it by the runtime in seconds, we get the bandwidth. We can use the
// data volume unit and add 'Second' as unit denominator
func (u *unit) AddUnitDenominator(div Measure) {
u.divMeasure = div
}
func (u *unit) getPrefix() Prefix {
return u.prefix
}
func (u *unit) setPrefix(p Prefix) {
u.prefix = p
}
func (u *unit) getMeasure() Measure {
return u.measure
}
func (u *unit) getUnitDenominator() Measure {
return u.divMeasure
}
func ConvertValue(v *float64, from string, to string) {
uf := NewUnit(from)
ut := NewUnit(to)
factor := float64(uf.getPrefix()) / float64(ut.getPrefix())
*v = math.Ceil(*v * factor)
}
func ConvertSeries(s []float64, from string, to string) {
uf := NewUnit(from)
ut := NewUnit(to)
factor := float64(uf.getPrefix()) / float64(ut.getPrefix())
for i := 0; i < len(s); i++ {
s[i] = math.Ceil(s[i] * factor)
}
}
func getNormalizationFactor(v float64) (float64, int) {
count := 0
scale := -3
if v > 1000.0 {
for v > 1000.0 {
v *= 1e-3
count++
}
} else {
for v < 1.0 {
v *= 1e3
count++
}
scale = 3
}
return math.Pow10(count * scale), count * scale
}
func NormalizeValue(v *float64, us string, nu *string) {
u := NewUnit(us)
f, e := getNormalizationFactor((*v))
*v = math.Ceil(*v * f)
u.setPrefix(NewPrefixFromFactor(u.getPrefix(), e))
*nu = u.Short()
}
func NormalizeSeries(s []float64, avg float64, us string, nu *string) {
u := NewUnit(us)
f, e := getNormalizationFactor(avg)
for i := 0; i < len(s); i++ {
s[i] *= f
s[i] = math.Ceil(s[i])
}
u.setPrefix(NewPrefixFromFactor(u.getPrefix(), e))
fmt.Printf("Prefix: %e \n", u.getPrefix())
*nu = u.Short()
}
func ConvertUnitString(us string) schema.Unit {
var nu schema.Unit
if us == "CPI" ||
us == "IPC" ||
us == "load" ||
us == "" {
nu.Base = us
return nu
}
u := NewUnit(us)
p := u.getPrefix()
if p.Prefix() != "" {
prefix := p.Prefix()
nu.Prefix = &prefix
}
m := u.getMeasure()
d := u.getUnitDenominator()
if d.Short() != "inval" {
nu.Base = fmt.Sprintf("%s/%s", m.Short(), d.Short())
} else {
nu.Base = m.Short()
}
return nu
}
// GetPrefixPrefixFactor creates the default conversion function between two prefixes.
// It returns a conversation function for the value.
func GetPrefixPrefixFactor(in Prefix, out Prefix) func(value interface{}) interface{} {
var factor = 1.0
var in_prefix = float64(in)
var out_prefix = float64(out)
factor = in_prefix / out_prefix
conv := func(value interface{}) interface{} {
switch v := value.(type) {
case float64:
return v * factor
case float32:
return float32(float64(v) * factor)
case int:
return int(float64(v) * factor)
case int32:
return int32(float64(v) * factor)
case int64:
return int64(float64(v) * factor)
case uint:
return uint(float64(v) * factor)
case uint32:
return uint32(float64(v) * factor)
case uint64:
return uint64(float64(v) * factor)
}
return value
}
return conv
}
// This is the conversion function between temperatures in Celsius to Fahrenheit
func convertTempC2TempF(value interface{}) interface{} {
switch v := value.(type) {
case float64:
return (v * 1.8) + 32
case float32:
return (v * 1.8) + 32
case int:
return int((float64(v) * 1.8) + 32)
case int32:
return int32((float64(v) * 1.8) + 32)
case int64:
return int64((float64(v) * 1.8) + 32)
case uint:
return uint((float64(v) * 1.8) + 32)
case uint32:
return uint32((float64(v) * 1.8) + 32)
case uint64:
return uint64((float64(v) * 1.8) + 32)
}
return value
}
// This is the conversion function between temperatures in Fahrenheit to Celsius
func convertTempF2TempC(value interface{}) interface{} {
switch v := value.(type) {
case float64:
return (v - 32) / 1.8
case float32:
return (v - 32) / 1.8
case int:
return int(((float64(v) - 32) / 1.8))
case int32:
return int32(((float64(v) - 32) / 1.8))
case int64:
return int64(((float64(v) - 32) / 1.8))
case uint:
return uint(((float64(v) - 32) / 1.8))
case uint32:
return uint32(((float64(v) - 32) / 1.8))
case uint64:
return uint64(((float64(v) - 32) / 1.8))
}
return value
}
// GetPrefixStringPrefixStringFactor is a wrapper for GetPrefixPrefixFactor with string inputs instead
// of prefixes. It also returns a conversation function for the value.
func GetPrefixStringPrefixStringFactor(in string, out string) func(value interface{}) interface{} {
var i Prefix = NewPrefix(in)
var o Prefix = NewPrefix(out)
return GetPrefixPrefixFactor(i, o)
}
// GetUnitPrefixFactor gets the conversion function and resulting unit for a unit and a prefix. This is
// the most common case where you have some input unit and want to convert it to the same unit but with
// a different prefix. The returned unit represents the value after conversation.
func GetUnitPrefixFactor(in Unit, out Prefix) (func(value interface{}) interface{}, Unit) {
outUnit := NewUnit(in.Short())
if outUnit.Valid() {
outUnit.setPrefix(out)
conv := GetPrefixPrefixFactor(in.getPrefix(), out)
return conv, outUnit
}
return nil, INVALID_UNIT
}
// GetUnitPrefixStringFactor gets the conversion function and resulting unit for a unit and a prefix as string.
// It is a wrapper for GetUnitPrefixFactor
func GetUnitPrefixStringFactor(in Unit, out string) (func(value interface{}) interface{}, Unit) {
var o Prefix = NewPrefix(out)
return GetUnitPrefixFactor(in, o)
}
// GetUnitStringPrefixStringFactor gets the conversion function and resulting unit for a unit and a prefix when both are only string representations.
// This is just a wrapper for GetUnitPrefixFactor with the given input unit and the desired output prefix.
func GetUnitStringPrefixStringFactor(in string, out string) (func(value interface{}) interface{}, Unit) {
var i = NewUnit(in)
return GetUnitPrefixStringFactor(i, out)
}
// GetUnitUnitFactor gets the conversion function and (maybe) error for unit to unit conversion.
// It is basically a wrapper for GetPrefixPrefixFactor with some special cases for temperature
// conversion between Fahrenheit and Celsius.
func GetUnitUnitFactor(in Unit, out Unit) (func(value interface{}) interface{}, error) {
if in.getMeasure() == TemperatureC && out.getMeasure() == TemperatureF {
return convertTempC2TempF, nil
} else if in.getMeasure() == TemperatureF && out.getMeasure() == TemperatureC {
return convertTempF2TempC, nil
} else if in.getMeasure() != out.getMeasure() || in.getUnitDenominator() != out.getUnitDenominator() {
return func(value interface{}) interface{} { return 1.0 }, fmt.Errorf("UNITS/UNITS > invalid measures in in and out Unit")
}
return GetPrefixPrefixFactor(in.getPrefix(), out.getPrefix()), nil
}
// NewUnit creates a new unit out of a string representing a unit like 'Mbyte/s' or 'GHz'.
// It uses regular expressions to detect the prefix, unit and (maybe) unit denominator.
func NewUnit(unitStr string) Unit {
u := &unit{
prefix: InvalidPrefix,
measure: InvalidMeasure,
divMeasure: InvalidMeasure,
}
matches := prefixUnitSplitRegex.FindStringSubmatch(unitStr)
if len(matches) > 2 {
pre := NewPrefix(matches[1])
measures := strings.Split(matches[2], "/")
m := NewMeasure(measures[0])
// Special case for prefix 'p' or 'P' (Peta) and measures starting with 'p' or 'P'
// like 'packets' or 'percent'. Same for 'e' or 'E' (Exa) for measures starting with
// 'e' or 'E' like 'events'
if m == InvalidMeasure {
switch pre {
case Peta, Exa:
t := NewMeasure(matches[1] + measures[0])
if t != InvalidMeasure {
m = t
pre = Base
}
}
}
div := InvalidMeasure
if len(measures) > 1 {
div = NewMeasure(measures[1])
}
switch m {
// Special case for 'm' as prefix for Bytes and some others as thers is no unit like MilliBytes
case Bytes, Flops, Packets, Events, Cycles, Requests:
if pre == Milli {
pre = Mega
}
// Special case for percentage. No/ignore prefix
case Percentage:
pre = Base
}
if pre != InvalidPrefix && m != InvalidMeasure {
u.prefix = pre
u.measure = m
if div != InvalidMeasure {
u.divMeasure = div
}
}
}
return u
}

307
pkg/units/units_test.go
View File

@ -1,307 +0,0 @@
package units
import (
"fmt"
"reflect"
"regexp"
"testing"
)
func TestUnitsExact(t *testing.T) {
testCases := []struct {
in string
want Unit
}{
{"b", NewUnit("Bytes")},
{"B", NewUnit("Bytes")},
{"byte", NewUnit("Bytes")},
{"bytes", NewUnit("Bytes")},
{"BYtes", NewUnit("Bytes")},
{"Mb", NewUnit("MBytes")},
{"MB", NewUnit("MBytes")},
{"Mbyte", NewUnit("MBytes")},
{"Mbytes", NewUnit("MBytes")},
{"MbYtes", NewUnit("MBytes")},
{"Gb", NewUnit("GBytes")},
{"GB", NewUnit("GBytes")},
{"Hz", NewUnit("Hertz")},
{"MHz", NewUnit("MHertz")},
{"GHz", NewUnit("GHertz")},
{"pkts", NewUnit("Packets")},
{"packets", NewUnit("Packets")},
{"packet", NewUnit("Packets")},
{"flop", NewUnit("Flops")},
{"flops", NewUnit("Flops")},
{"floPS", NewUnit("Flops")},
{"Mflop", NewUnit("MFlops")},
{"Gflop", NewUnit("GFlops")},
{"gflop", NewUnit("GFlops")},
{"%", NewUnit("Percent")},
{"percent", NewUnit("Percent")},
{"degc", NewUnit("degC")},
{"degC", NewUnit("degC")},
{"degf", NewUnit("degF")},
{"°f", NewUnit("degF")},
{"events", NewUnit("events")},
{"event", NewUnit("events")},
{"EveNts", NewUnit("events")},
{"reqs", NewUnit("requests")},
{"reQuEsTs", NewUnit("requests")},
{"Requests", NewUnit("requests")},
{"cyc", NewUnit("cycles")},
{"cy", NewUnit("cycles")},
{"Cycles", NewUnit("cycles")},
{"J", NewUnit("Joules")},
{"Joule", NewUnit("Joules")},
{"joule", NewUnit("Joules")},
{"W", NewUnit("Watt")},
{"Watts", NewUnit("Watt")},
{"watt", NewUnit("Watt")},
{"s", NewUnit("seconds")},
{"sec", NewUnit("seconds")},
{"secs", NewUnit("seconds")},
{"RPM", NewUnit("rpm")},
{"rPm", NewUnit("rpm")},
{"watt/byte", NewUnit("W/B")},
{"watts/bytes", NewUnit("W/B")},
{"flop/byte", NewUnit("flops/Bytes")},
{"F/B", NewUnit("flops/Bytes")},
}
compareUnitExact := func(in, out Unit) bool {
if in.getMeasure() == out.getMeasure() && in.getUnitDenominator() == out.getUnitDenominator() && in.getPrefix() == out.getPrefix() {
return true
}
return false
}
for _, c := range testCases {
u := NewUnit(c.in)
if (!u.Valid()) || (!compareUnitExact(u, c.want)) {
t.Errorf("func NewUnit(%q) == %q, want %q", c.in, u.String(), c.want.String())
} else {
t.Logf("NewUnit(%q) == %q", c.in, u.String())
}
}
}
func TestUnitUnitConversion(t *testing.T) {
testCases := []struct {
in string
want Unit
prefixFactor float64
}{
{"kb", NewUnit("Bytes"), 1000},
{"Mb", NewUnit("Bytes"), 1000000},
{"Mb/s", NewUnit("Bytes/s"), 1000000},
{"Flops/s", NewUnit("MFlops/s"), 1e-6},
{"Flops/s", NewUnit("GFlops/s"), 1e-9},
{"MHz", NewUnit("Hertz"), 1e6},
{"kb", NewUnit("Kib"), 1000.0 / 1024},
{"Mib", NewUnit("MBytes"), (1024 * 1024.0) / (1e6)},
{"mb", NewUnit("MBytes"), 1.0},
}
compareUnitWithPrefix := func(in, out Unit, factor float64) bool {
if in.getMeasure() == out.getMeasure() && in.getUnitDenominator() == out.getUnitDenominator() {
if f := GetPrefixPrefixFactor(in.getPrefix(), out.getPrefix()); f(1.0) == factor {
return true
} else {
fmt.Println(f(1.0))
}
}
return false
}
for _, c := range testCases {
u := NewUnit(c.in)
if (!u.Valid()) || (!compareUnitWithPrefix(u, c.want, c.prefixFactor)) {
t.Errorf("GetPrefixPrefixFactor(%q, %q) invalid, want %q with factor %g", c.in, u.String(), c.want.String(), c.prefixFactor)
} else {
t.Logf("GetPrefixPrefixFactor(%q, %q) = %g", c.in, c.want.String(), c.prefixFactor)
}
}
}
func TestUnitPrefixConversion(t *testing.T) {
testCases := []struct {
in string
want string
prefixFactor float64
wantUnit Unit
}{
{"KBytes", "", 1000, NewUnit("Bytes")},
{"MBytes", "", 1e6, NewUnit("Bytes")},
{"MBytes", "G", 1e-3, NewUnit("GBytes")},
{"mb", "M", 1, NewUnit("MBytes")},
}
compareUnitPrefix := func(in Unit, out Prefix, factor float64, outUnit Unit) bool {
if in.Valid() {
conv, unit := GetUnitPrefixFactor(in, out)
value := conv(1.0)
if value == factor && unit.String() == outUnit.String() {
return true
}
}
return false
}
for _, c := range testCases {
u := NewUnit(c.in)
p := NewPrefix(c.want)
if (!u.Valid()) || (!compareUnitPrefix(u, p, c.prefixFactor, c.wantUnit)) {
t.Errorf("GetUnitPrefixFactor(%q, %q) invalid, want %q with factor %g", c.in, p.Prefix(), c.wantUnit.String(), c.prefixFactor)
} else {
t.Logf("GetUnitPrefixFactor(%q, %q) = %g", c.in, c.wantUnit.String(), c.prefixFactor)
}
}
}
func TestPrefixPrefixConversion(t *testing.T) {
testCases := []struct {
in string
want string
prefixFactor float64
}{
{"K", "", 1000},
{"M", "", 1e6},
{"M", "G", 1e-3},
{"", "M", 1e-6},
{"", "m", 1e3},
{"m", "n", 1e6},
//{"", "n", 1e9}, //does not work because of IEEE rounding problems
}
for _, c := range testCases {
i := NewPrefix(c.in)
o := NewPrefix(c.want)
if i != InvalidPrefix && o != InvalidPrefix {
conv := GetPrefixPrefixFactor(i, o)
value := conv(1.0)
if value != c.prefixFactor {
t.Errorf("GetPrefixPrefixFactor(%q, %q) invalid, want %q with factor %g but got %g", c.in, c.want, o.Prefix(), c.prefixFactor, value)
} else {
t.Logf("GetPrefixPrefixFactor(%q, %q) = %g", c.in, c.want, c.prefixFactor)
}
}
}
}
func TestMeasureRegex(t *testing.T) {
for _, data := range MeasuresMap {
_, err := regexp.Compile(data.Regex)
if err != nil {
t.Errorf("failed to compile regex '%s': %s", data.Regex, err.Error())
}
t.Logf("succussfully compiled regex '%s' for measure %s", data.Regex, data.Long)
}
}
func TestPrefixRegex(t *testing.T) {
for _, data := range PrefixDataMap {
_, err := regexp.Compile(data.Regex)
if err != nil {
t.Errorf("failed to compile regex '%s': %s", data.Regex, err.Error())
}
t.Logf("succussfully compiled regex '%s' for prefix %s", data.Regex, data.Long)
}
}
func TestConvertValue(t *testing.T) {
v := float64(103456)
ConvertValue(&v, "MB/s", "GB/s")
if v != 104.00 {
t.Errorf("Failed ConvertValue: Want 103.456, Got %f", v)
}
}
func TestConvertValueUp(t *testing.T) {
v := float64(10.3456)
ConvertValue(&v, "GB/s", "MB/s")
if v != 10346.00 {
t.Errorf("Failed ConvertValue: Want 10346.00, Got %f", v)
}
}
func TestConvertSeries(t *testing.T) {
s := []float64{2890031237, 23998994567, 389734042344, 390349424345}
r := []float64{3, 24, 390, 391}
ConvertSeries(s, "F/s", "GF/s")
if !reflect.DeepEqual(s, r) {
t.Errorf("Failed ConvertValue: Want 3, 24, 390, 391, Got %v", s)
}
}
func TestNormalizeValue(t *testing.T) {
var s string
v := float64(103456)
NormalizeValue(&v, "MB/s", &s)
if v != 104.00 {
t.Errorf("Failed ConvertValue: Want 104.00, Got %f", v)
}
if s != "GB/s" {
t.Errorf("Failed Prefix or unit: Want GB/s, Got %s", s)
}
}
func TestNormalizeValueNoPrefix(t *testing.T) {
var s string
v := float64(103458596)
NormalizeValue(&v, "F/s", &s)
if v != 104.00 {
t.Errorf("Failed ConvertValue: Want 104.00, Got %f", v)
}
if s != "MF/s" {
t.Errorf("Failed Prefix or unit: Want MF/s, Got %s", s)
}
}
func TestNormalizeValueKeep(t *testing.T) {
var s string
v := float64(345)
NormalizeValue(&v, "MB/s", &s)
if v != 345.00 {
t.Errorf("Failed ConvertValue: Want 104.00, Got %f", v)
}
if s != "MB/s" {
t.Errorf("Failed Prefix or unit: Want GB/s, Got %s", s)
}
}
func TestNormalizeValueDown(t *testing.T) {
var s string
v := float64(0.0004578)
NormalizeValue(&v, "GB/s", &s)
if v != 458.00 {
t.Errorf("Failed ConvertValue: Want 458.00, Got %f", v)
}
if s != "KB/s" {
t.Errorf("Failed Prefix or unit: Want KB/s, Got %s", s)
}
}
func TestNormalizeSeries(t *testing.T) {
var us string
s := []float64{2890031237, 23998994567, 389734042344, 390349424345}
r := []float64{3, 24, 390, 391}
total := 0.0
for _, number := range s {
total += number
}
avg := total / float64(len(s))
fmt.Printf("AVG: %e\n", avg)
NormalizeSeries(s, avg, "KB/s", &us)
if !reflect.DeepEqual(s, r) {
t.Errorf("Failed ConvertValue: Want 3, 24, 390, 391, Got %v", s)
}
if us != "TB/s" {
t.Errorf("Failed Prefix or unit: Want TB/s, Got %s", us)
}
}

496
test/data.json
View File

@ -1,496 +0,0 @@
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"min": 83.8466923147859,
"avg": 85.18572681122097,
"max": 85.83909286117324
},
"data": [
83.8466923147859,
85.58816979864088,
85.31266819129794,
85.83909286117324,
85.34201089020692
]
}
],
"statisticsSeries": null
}
}
}

98
test/meta.json
View File

@ -1,98 +0,0 @@
{
"jobId": 20639587,
"user": "s3804552",
"project": "p_speichersysteme",
"cluster": "taurus",
"subCluster": "haswell",
"partition": "haswell64",
"numNodes": 2,
"numHwthreads": 4,
"exclusive": 0,
"startTime": 1635856524,
"jobState": "completed",
"duration": 310,
"walltime": 3600,
"smt": 0,
"resources": [
{
"hostname": "taurusi6489",
"hwthreads": [
0,
1
]
},
{
"hostname": "taurusi6490",
"hwthreads": [
10,
11
]
}
],
"statistics": {
"cpu_used": {
"min": 0.03694102397926118,
"avg": 0.48812580468611544,
"max": 1.0000000000000002,
"unit": {
"base": ""
}
},
"ipc": {
"min": 0.30469640475234366,
"avg": 1.154312070173657,
"max": 1.797623522191001,
"unit": {
"base": "IPC"
}
},
"flops_any": {
"min": 0.0,
"avg": 686.5190320308598,
"max": 4346.591400350933,
"unit": {
"base": "F/s"
}
},
"mem_bw": {
"min": 653671812.1661415,
"avg": 1605031604.9852366,
"max": 2614718291.9554267,
"unit": {
"base": "B/s"
}
},
"file_bw": {
"min": 0.0,
"avg": 620592.5419124186,
"max": 11559156.360352296,
"unit": {
"base": "B/s"
}
},
"net_bw": {
"min": 126779.89655880642,
"avg": 763101.082138246,
"max": 1916309.7075416835,
"unit": {
"base": "B/s"
}
},
"mem_used": {
"min": 2779066368.0,
"avg": 9647598685.09091,
"max": 10202595328.0,
"unit": {
"base": "B"
}
},
"cpu_power": {
"min": 35.50647456742635,
"avg": 78.63442946337237,
"max": 85.83909286117324,
"unit": {
"base": "W"
}
}
}
}

BIN
test/test.db
View File

Binary file not shown.

12
tools/archive-migration/job.go
View File

@ -23,17 +23,17 @@ type BaseJob struct {
Project string `json:"project" db:"project" example:"abcd200"` // The unique identifier of a project
Cluster string `json:"cluster" db:"cluster" example:"fritz"` // The unique identifier of a cluster
SubCluster string `json:"subCluster" db:"subcluster" example:"main"` // The unique identifier of a sub cluster
Partition *string `json:"partition" db:"partition" example:"main"` // The Slurm partition to which the job was submitted
ArrayJobId *int64 `json:"arrayJobId" db:"array_job_id" example:"123000"` // The unique identifier of an array job
Partition string `json:"partition" db:"partition" example:"main"` // The Slurm partition to which the job was submitted
ArrayJobId int64 `json:"arrayJobId" db:"array_job_id" example:"123000"` // The unique identifier of an array job
NumNodes int32 `json:"numNodes" db:"num_nodes" example:"2" minimum:"1"` // Number of nodes used (Min > 0)
NumHWThreads *int32 `json:"numHwthreads" db:"num_hwthreads" example:"20" minimum:"1"` // Number of HWThreads used (Min > 0)
NumAcc *int32 `json:"numAcc" db:"num_acc" example:"2" minimum:"1"` // Number of accelerators used (Min > 0)
NumHWThreads int32 `json:"numHwthreads" db:"num_hwthreads" example:"20" minimum:"1"` // Number of HWThreads used (Min > 0)
NumAcc int32 `json:"numAcc" db:"num_acc" example:"2" minimum:"1"` // Number of accelerators used (Min > 0)
Exclusive int32 `json:"exclusive" db:"exclusive" example:"1" minimum:"0" maximum:"2"` // Specifies how nodes are shared: 0 - Shared among multiple jobs of multiple users, 1 - Job exclusive (Default), 2 - Shared among multiple jobs of same user
MonitoringStatus int32 `json:"monitoringStatus" db:"monitoring_status" example:"1" minimum:"0" maximum:"3"` // State of monitoring system during job run: 0 - Disabled, 1 - Running or Archiving (Default), 2 - Archiving Failed, 3 - Archiving Successfull
SMT *int32 `json:"smt" db:"smt" example:"4"` // SMT threads used by job
SMT int32 `json:"smt" db:"smt" example:"4"` // SMT threads used by job
State JobState `json:"jobState" db:"job_state" example:"completed" enums:"completed,failed,cancelled,stopped,timeout,out_of_memory"` // Final state of job
Duration int32 `json:"duration" db:"duration" example:"43200" minimum:"1"` // Duration of job in seconds (Min > 0)
Walltime *int64 `json:"walltime" db:"walltime" example:"86400" minimum:"1"` // Requested walltime of job in seconds (Min > 0)
Walltime int64 `json:"walltime" db:"walltime" example:"86400" minimum:"1"` // Requested walltime of job in seconds (Min > 0)
Tags []*schema.Tag `json:"tags"` // List of tags
RawResources []byte `json:"-" db:"resources"` // Resources used by job [As Bytes]
Resources []*Resource `json:"resources"` // Resources used by job

43
tools/archive-migration/main.go
View File

@ -17,7 +17,7 @@ import (
"github.com/ClusterCockpit/cc-backend/internal/config"
"github.com/ClusterCockpit/cc-backend/pkg/log"
"github.com/ClusterCockpit/cc-backend/pkg/schema"
"github.com/ClusterCockpit/cc-backend/pkg/units"
ccunits "github.com/ClusterCockpit/cc-units"
)
const Version = 1
@ -35,6 +35,33 @@ func loadJobData(filename string) (*JobData, error) {
return DecodeJobData(bufio.NewReader(f))
}
func ConvertUnitString(us string) schema.Unit {
var nu schema.Unit
if us == "CPI" ||
us == "IPC" ||
us == "load" ||
us == "" {
nu.Base = us
return nu
}
u := ccunits.NewUnit(us)
p := u.GetPrefix()
if p.Prefix() != "" {
prefix := p.Prefix()
nu.Prefix = prefix
}
m := u.GetMeasure()
d := u.GetUnitDenominator()
if d.Short() != "inval" {
nu.Base = fmt.Sprintf("%s/%s", m.Short(), d.Short())
} else {
nu.Base = m.Short()
}
return nu
}
func deepCopyJobMeta(j *JobMeta) schema.JobMeta {
var jn schema.JobMeta
@ -78,7 +105,7 @@ func deepCopyJobMeta(j *JobMeta) schema.JobMeta {
sn.Avg = v.Avg
sn.Max = v.Max
sn.Min = v.Min
tmpUnit := units.ConvertUnitString(v.Unit)
tmpUnit := ConvertUnitString(v.Unit)
if tmpUnit.Base == "inval" {
sn.Unit = schema.Unit{Base: ""}
} else {
@ -113,7 +140,7 @@ func deepCopyJobData(d *JobData, cluster string, subCluster string) *schema.JobD
for mk, mv := range v {
// fmt.Printf("Scope %s\n", mk)
var mn schema.JobMetric
tmpUnit := units.ConvertUnitString(mv.Unit)
tmpUnit := ConvertUnitString(mv.Unit)
if tmpUnit.Base == "inval" {
mn.Unit = schema.Unit{Base: ""}
} else {
@ -174,16 +201,14 @@ func deepCopyClusterConfig(co *Cluster) schema.Cluster {
scn.SocketsPerNode = sco.SocketsPerNode
scn.CoresPerSocket = sco.CoresPerSocket
scn.ThreadsPerCore = sco.ThreadsPerCore
var prefix = new(string)
*prefix = "G"
scn.FlopRateScalar = schema.MetricValue{
Unit: schema.Unit{Base: "F/s", Prefix: prefix},
Unit: schema.Unit{Base: "F/s", Prefix: "G"},
Value: float64(sco.FlopRateScalar)}
scn.FlopRateSimd = schema.MetricValue{
Unit: schema.Unit{Base: "F/s", Prefix: prefix},
Unit: schema.Unit{Base: "F/s", Prefix: "G"},
Value: float64(sco.FlopRateSimd)}
scn.MemoryBandwidth = schema.MetricValue{
Unit: schema.Unit{Base: "B/s", Prefix: prefix},
Unit: schema.Unit{Base: "B/s", Prefix: "G"},
Value: float64(sco.MemoryBandwidth)}
scn.Topology = *sco.Topology
cn.SubClusters = append(cn.SubClusters, &scn)
@ -200,7 +225,7 @@ func deepCopyClusterConfig(co *Cluster) schema.Cluster {
mcn.Aggregation = mco.Aggregation
}
mcn.Timestep = mco.Timestep
tmpUnit := units.ConvertUnitString(mco.Unit)
tmpUnit := ConvertUnitString(mco.Unit)
if tmpUnit.Base == "inval" {
mcn.Unit = schema.Unit{Base: ""}
} else {

867
web/frontend/package-lock.json generated Normal file
View File

@ -0,0 +1,867 @@
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"version": "1.0.0",
"lockfileVersion": 3,
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"uplot": "^1.6.7",
"wonka": "^4.0.15"
},
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"@rollup/plugin-node-resolve": "^11.0.0",
"rollup": "^2.3.4",
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"rollup-plugin-svelte": "^7.0.0",
"rollup-plugin-terser": "^7.0.0",
"svelte": "^3.49.0"
}
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534
web/frontend/yarn.lock
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@ -1,534 +0,0 @@
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