Merge branch 'main' of git.clustercockpit.org:moebiusband/NuSiF-Solver

BasicSolver/3D-mpi-io/src/main.c

@@ -0,0 +1,90 @@
+/*
+ * Copyright (C) 2024 NHR@FAU, University Erlangen-Nuremberg.
+ * All rights reserved.
+ * Use of this source code is governed by a MIT-style
+ * license that can be found in the LICENSE file.
+ */
+#include <float.h>
+#include <limits.h>
+#include <stdio.h>
+#include <stdlib.h>
+#include <unistd.h>
+
+#include "allocate.h"
+#include "comm.h"
+#include "parameter.h"
+#include "progress.h"
+#include "solver.h"
+#include "timing.h"
+#include "vtkWriter.h"
+
+int main(int argc, char** argv)
+{
+    double timeStart, timeStop;
+    Parameter p;
+    Solver s;
+
+    commInit(&s.comm, argc, argv);
+    initParameter(&p);
+
+    if (argc != 2) {
+        printf("Usage: %s <configFile>\n", argv[0]);
+        exit(EXIT_SUCCESS);
+    }
+
+    readParameter(&p, argv[1]);
+    commPartition(&s.comm, p.kmax, p.jmax, p.imax);
+    if (commIsMaster(&s.comm)) {
+        printParameter(&p);
+    }
+    initSolver(&s, &p);
+#ifndef VERBOSE
+    initProgress(s.te);
+#endif
+
+    double tau = s.tau;
+    double te  = s.te;
+    double t   = 0.0;
+
+    timeStart = getTimeStamp();
+    while (t <= te) {
+        if (tau > 0.0) computeTimestep(&s);
+        setBoundaryConditions(&s);
+        setSpecialBoundaryCondition(&s);
+        computeFG(&s);
+        computeRHS(&s);
+        solve(&s);
+        adaptUV(&s);
+        t += s.dt;
+
+#ifdef VERBOSE
+        if (commIsMaster(&s.comm)) {
+            printf("TIME %f , TIMESTEP %f\n", t, s.dt);
+        }
+#else
+        printProgress(t);
+#endif
+    }
+    timeStop = getTimeStamp();
+#ifndef VERBOSE
+    stopProgress();
+#endif
+    if (commIsMaster(&s.comm)) {
+        printf("Solution took %.2fs\n", timeStop - timeStart);
+    }
+
+    timeStart       = getTimeStamp();
+    VtkOptions opts = { .grid = s.grid, .comm = s.comm };
+    vtkOpen(&opts, s.problem);
+    vtkScalar(&opts, "pressure", s.p);
+    vtkVector(&opts, "velocity", (VtkVector) { s.u, s.v, s.w });
+    vtkClose(&opts);
+    timeStop = getTimeStamp();
+
+    if (commIsMaster(&s.comm)) {
+        printf("Result output took %.2fs\n", timeStop - timeStart);
+    }
+
+    commFinalize(&s.comm);
+    return EXIT_SUCCESS;
+}

BasicSolver/3D-mpi/include_ICC.mk

@@ -15,6 +15,6 @@ endif
 VERSION  = --version
 CFLAGS   =  -O3 -xHost -qopt-zmm-usage=high -std=c99 $(OPENMP)
 LFLAGS   = $(OPENMP)
-DEFINES  += -D_GNU_SOURCE
+DEFINES  += -D_GNU_SOURCE# -DDEBUG
 INCLUDES =
 LIBS     =

BasicSolver/3D-mpi/src/main.c

@@ -71,6 +71,7 @@ int main(int argc, char** argv)
         printf("Solution took %.2fs\n", timeStop - timeStart);
     }
 
+    timeStart = getTimeStamp();
 #ifdef _VTK_WRITER_MPI
     VtkOptions opts = { .grid = s.grid, .comm = s.comm };
     vtkOpen(&opts, s.problem);
@@ -111,6 +112,12 @@ int main(int argc, char** argv)
     }
 #endif
 
+    timeStop = getTimeStamp();
+
+    if (commIsMaster(&s.comm)) {
+        printf("Result output took %.2fs\n", timeStop - timeStart);
+    }
+
     commFinalize(&s.comm);
     return EXIT_SUCCESS;
 }

BasicSolver/3D-mpi/src/vtkWriter-mpi.c

@@ -91,8 +91,7 @@ void vtkScalar(VtkOptions* o, char* name, double* s)
     char header[100];
     char* cursor = header;
 
-    cursor += sprintf(cursor, "SCALARS %s double 1\n", name);
-    cursor += sprintf(cursor, "LOOKUP_TABLE default\n");
+    cursor += sprintf(cursor, "SCALARS %s double\n", name);
 
     if (commIsMaster(&o->comm)) {
         MPI_File_write(o->fh, header, (int)strlen(header), MPI_CHAR, MPI_STATUS_IGNORE);

BasicSolver/3D-seq/src/main.c

@@ -111,6 +111,7 @@ int main(int argc, char** argv)
 #endif
     printf("Solution took %.2fs\n", timeStop - timeStart);
 
+    timeStart       = getTimeStamp();
     double *pg, *ug, *vg, *wg;
 
     size_t bytesize = (size_t)(s.grid.imax * s.grid.jmax * s.grid.kmax) * sizeof(double);
@@ -126,5 +127,11 @@ int main(int argc, char** argv)
     vtkScalar(&opts, "pressure", pg);
     vtkVector(&opts, "velocity", (VtkVector) { ug, vg, wg });
     vtkClose(&opts);
+    timeStop = getTimeStamp();
+
+    if (commIsMaster(&s.comm)) {
+        printf("Result output took %.2fs\n", timeStop - timeStart);
+    }
+
     return EXIT_SUCCESS;
 }

BasicSolver/3D-seq/src/vtkWriter.c

@@ -69,8 +69,7 @@ void vtkScalar(VtkOptions* o, char* name, double* s)
         printf("vtkWriter not initialize! Call vtkOpen first!\n");
         exit(EXIT_FAILURE);
     }
-    fprintf(o->fh, "SCALARS %s float 1\n", name);
-    fprintf(o->fh, "LOOKUP_TABLE default\n");
+    fprintf(o->fh, "SCALARS %s float\n", name);
 
     for (int k = 0; k < kmax; k++) {
         for (int j = 0; j < jmax; j++) {