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Porting working changes from 3D-seq to 3D-MPI

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Aditya Ujeniya
2023-12-04 14:40:02 +01:00
parent 1987056dce
commit 1b3129d3cb
25 changed files with 5162240 additions and 362320 deletions
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6
PoissonSolver/2D-mpi/poisson.par
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@@ -8,8 +8,8 @@ name poisson
xlength 1.0 # domain size in x-direction
ylength 1.0 # domain size in y-direction
imax 1000 # number of interior cells in x-direction
jmax 10000 # number of interior cells in y-direction
imax 100 # number of interior cells in x-direction
jmax 100 # number of interior cells in y-direction
# Pressure Iteration Data:
# -----------------------
@@ -17,6 +17,6 @@ jmax 10000 # number of interior cells in y-direction
itermax 10000 # maximal number of pressure iteration in one time step
eps 0.000001 # stopping tolerance for pressure iteration
rho 0.99999
omg 1.991 # relaxation parameter for SOR iteration
omg 1.8 # relaxation parameter for SOR iteration
#===============================================================================

73
PoissonSolver/2D-mpi/result.csv
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@@ -1,73 +0,0 @@
Rank, SOR, RB
1, 1138.31, 447.94
2, 569.26, 225.46
3, 379.59, 150.36
4, 284.87, 112.45
5, 227.82, 89.36
6, 190.25, 75.91
7, 163.19, 64.62
8, 142.55, 56.34
9, 126.80, 49.90
10, 114.09, 45.32
11, 103.80, 40.71
12, 95.28, 37.55
13, 87.99, 35.60
14, 81.72, 33.19
15, 76.30, 30.71
16, 71.51, 29.01
17, 67.35, 26.94
18, 63.69, 25.98
19, 60.47, 24.49
20, 57.49, 23.21
21, 54.81, 22.22
22, 52.26, 21.01
23, 50.01, 20.81
24, 47.93, 19.83
25, 46.04, 18.94
26, 44.30, 18.01
27, 42.68, 17.71
28, 41.16, 16.93
29, 39.72, 16.33
30, 38.51, 16.10
31, 37.31, 15.27
32, 36.15, 14.86
33, 35.11, 14.31
34, 34.08, 13.76
35, 33.13, 13.50
36, 32.22, 13.41
37, 31.37, 12.86
38, 30.55, 12.65
39, 29.83, 12.04
40, 29.02, 11.88
41, 28.34, 11.45
42, 27.75, 11.33
43, 27.13, 10.96
44, 26.52, 10.69
45, 26.02, 10.43
46, 25.37, 10.24
47, 24.86, 10.07
48, 24.42, 9.76
49, 23.93, 9.85
50, 23.38, 9.44
51, 23.11, 9.33
52, 22.58, 9.01
53, 22.18, 8.95
54, 21.82, 8.78
55, 21.39, 8.56
56, 21.04, 8.45
57, 20.71, 8.30
58, 20.38, 8.10
59, 20.03, 7.99
60, 19.78, 7.77
61, 19.44, 7.64
62, 19.15, 7.55
63, 18.83, 7.46
64, 18.66, 7.29
65, 18.25, 7.19
66, 18.07, 7.09
67, 17.83, 7.02
68, 17.60, 6.90
69, 17.48, 6.84
70, 17.22, 6.78
71, 19.10, 6.74
72, 17.46, 6.83
1 Rank SOR RB
2 1 1138.31 447.94
3 2 569.26 225.46
4 3 379.59 150.36
5 4 284.87 112.45
6 5 227.82 89.36
7 6 190.25 75.91
8 7 163.19 64.62
9 8 142.55 56.34
10 9 126.80 49.90
11 10 114.09 45.32
12 11 103.80 40.71
13 12 95.28 37.55
14 13 87.99 35.60
15 14 81.72 33.19
16 15 76.30 30.71
17 16 71.51 29.01
18 17 67.35 26.94
19 18 63.69 25.98
20 19 60.47 24.49
21 20 57.49 23.21
22 21 54.81 22.22
23 22 52.26 21.01
24 23 50.01 20.81
25 24 47.93 19.83
26 25 46.04 18.94
27 26 44.30 18.01
28 27 42.68 17.71
29 28 41.16 16.93
30 29 39.72 16.33
31 30 38.51 16.10
32 31 37.31 15.27
33 32 36.15 14.86
34 33 35.11 14.31
35 34 34.08 13.76
36 35 33.13 13.50
37 36 32.22 13.41
38 37 31.37 12.86
39 38 30.55 12.65
40 39 29.83 12.04
41 40 29.02 11.88
42 41 28.34 11.45
43 42 27.75 11.33
44 43 27.13 10.96
45 44 26.52 10.69
46 45 26.02 10.43
47 46 25.37 10.24
48 47 24.86 10.07
49 48 24.42 9.76
50 49 23.93 9.85
51 50 23.38 9.44
52 51 23.11 9.33
53 52 22.58 9.01
54 53 22.18 8.95
55 54 21.82 8.78
56 55 21.39 8.56
57 56 21.04 8.45
58 57 20.71 8.30
59 58 20.38 8.10
60 59 20.03 7.99
61 60 19.78 7.77
62 61 19.44 7.64
63 62 19.15 7.55
64 63 18.83 7.46
65 64 18.66 7.29
66 65 18.25 7.19
67 66 18.07 7.09
68 67 17.83 7.02
69 68 17.60 6.90
70 69 17.48 6.84
71 70 17.22 6.78
72 71 19.10 6.74
73 72 17.46 6.83

39
PoissonSolver/2D-mpi/sample.sh
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@@ -1,39 +0,0 @@
#!/bin/bash -l
#SBATCH --job-name=Sim
#SBATCH --output=Sim_Fritz.o%j
#SBATCH --partition=singlenode
#SBATCH --nodes=1
#SBATCH --ntasks-per-node=21
#SBATCH --ntasks=21
#SBATCH --time=20:00:00
#SBATCH --constraint=hwperf
#SBATCH --export=NONE
#SBATCH --cpu-freq=2400000-2400000:performance
unset SLURM_EXPORT_ENV
echo "Starting: $(date)"
export
module load python intel/2022.1.0 intelmpi/2021.7.0 itac #likwid/5.2.2
module list
cd $SLURM_SUBMIT_DIR
rm result.csv
touch result.csv
echo "Rank, SOR, RB" >> result.csv
for i in $(seq 1 1 72)
do
time="$i, "
time+="$(srun --cpu-freq=2200000-2200000:performance -n $i ./exe-ICC poisson.par 1 | grep 'Solution took' | cut -c 15-)"
time+=", "
time+="$(srun --cpu-freq=2200000-2200000:performance -n $i ./exe-ICC poisson.par 2 | grep 'Solution took' | cut -c 15-)"
time=${time//s}
echo $time >> result.csv
done

2
PoissonSolver/2D-mpi/src/solver.h
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@@ -7,6 +7,8 @@
#ifndef __SOLVER_H_
#define __SOLVER_H_
#include "parameter.h"
#include "timing.h"
typedef struct {
double dx, dy;