Incomplete 3D seq pt

BasicSolver/3D-seq/canal.par

@@ -50,4 +50,19 @@ eps           0.0001   # stopping tolerance for pressure iteration
 omg           0.52 
 omg           1.7       # relaxation parameter for SOR iteration
 gamma         0.9       # upwind differencing factor gamma
+
+# Particle Tracing Data:
+# -----------------------
+
+numberOfParticles   30
+startTime           10
+injectTimePeriod    2.0
+writeTimePeriod     2.0
+
+x1                  1.0
+y1                  0.0
+z1                  0.0
+x2                  1.0
+y2                  4.0
+z2                  0.0
 #===============================================================================

BasicSolver/3D-seq/src/main.c

@@ -78,6 +78,7 @@ int main(int argc, char** argv)
     double timeStart, timeStop;
     Parameter params;
     Solver s;
+    ParticleTracer particletracer;
     initParameter(&params);
 
     if (argc < 2) {
@@ -115,7 +116,7 @@ int main(int argc, char** argv)
         solver_generic[variant - 1](&s);
         adaptUV(&s);
 
-        trace(&particletracer, &solver, s.u, s.v, s.w, t);
+        trace(&particletracer, &s, s.u, s.v, s.w, t);
 
         t += s.dt;
         

BasicSolver/3D-seq/src/particletracing.c

@@ -32,23 +32,31 @@ void injectParticles(ParticleTracer* particletracer)
     {
         particletracer->particlePool[particletracer->pointer].x = particletracer->linSpaceLine[i].x;
         particletracer->particlePool[particletracer->pointer].y = particletracer->linSpaceLine[i].y;
+        particletracer->particlePool[particletracer->pointer].z = particletracer->linSpaceLine[i].z;
+
         particletracer->particlePool[particletracer->pointer].flag = true;
         ++(particletracer->pointer);
         ++(particletracer->totalParticles);
     }
 }
 
-void advanceParticles(ParticleTracer* particletracer, double* restrict u, double* restrict v, double time)
+void advanceParticles(ParticleTracer* particletracer, double* restrict u, double* restrict v, double* restrict w, double time)
 {
     int imax = particletracer->imax;
     int jmax = particletracer->jmax;
+    int kmax = particletracer->kmax;
+
 
 
     double dx = particletracer->dx;
     double dy = particletracer->dy;
+    double dz = particletracer->dz;
+
 
     double xlength = particletracer->xlength;
     double ylength = particletracer->ylength;
+    double zlength = particletracer->zlength;
+
 
     for(int i = 0; i < particletracer->totalParticles; ++i)
     {
@@ -56,41 +64,91 @@ void advanceParticles(ParticleTracer* particletracer, double* restrict u, double
         {
             double x = particletracer->particlePool[i].x;
             double y = particletracer->particlePool[i].y;
+            double z = particletracer->particlePool[i].z;
 
             int iCoord = (int)(x / dx) + 1;
             int jCoord = (int)((y + 0.5 * dy) / dy) + 1;
+            int kCoord = (int)((z + 0.5 * dz) / dz) + 1;
+
 
             double x1 = (double)(iCoord - 1) * dx;
             double y1 = ((double)(jCoord - 1) - 0.5) * dy;
+            double z1 = ((double)(kCoord - 1) - 0.5) * dz;
+
             double x2 = (double)iCoord * dx;
             double y2 = ((double)jCoord - 0.5) * dy;
+            double z2 = ((double)kCoord - 0.5) * dz;
 
-            double u_n = (1.0 / (dx * dy)) *
+
-                    ((x2 - x) * (y2 - y) * U(iCoord - 1, jCoord - 1) +
+            double u_n = (1.0 / (dx * dy * dz)) *
-                        (x - x1) * (y2 - y) * U(iCoord, jCoord - 1) +
+                    (
-                        (x2 - x) * (y - y1) * U(iCoord - 1, jCoord) +
+                    (x2 - x) * (y2 - y) * (z2 - z) * U(iCoord - 1, jCoord - 1, kCoord - 1) +
-                        (x - x1) * (y - y1) * U(iCoord, jCoord));
+                    (x - x1) * (y2 - y) * (z2 - z) * U(iCoord, jCoord - 1, kCoord - 1) +
+                    (x2 - x) * (y - y1) * (z2 - z) * U(iCoord - 1, jCoord, kCoord - 1) +
+                    (x - x1) * (y - y1) * (z2 - z) * U(iCoord, jCoord, kCoord - 1) + 
+                    (x2 - x) * (y2 - y) * (z - z1) * U(iCoord - 1, jCoord - 1, kCoord) +
+                    (x - x1) * (y2 - y) * (z - z1) * U(iCoord, jCoord - 1, kCoord) +
+                    (x2 - x) * (y - y1) * (z - z1) * U(iCoord - 1, jCoord, kCoord) +
+                    (x - x1) * (y - y1) * (z - z1) * U(iCoord, jCoord, kCoord)
+                    );
 
             double new_x = x + particletracer->dt * u_n;
             particletracer->particlePool[i].x = new_x;
 
             iCoord = (int)((x + 0.5 * dx) / dx) + 1;
             jCoord = (int)(y / dy) + 1;
+            kCoord = (int)((z + 0.5 * dz) / dz) + 1;
 
             x1 = ((double)(iCoord - 1) - 0.5) * dx;
             y1 = (double)(jCoord - 1) * dy;
+            z1 = ((double)(kCoord - 1) - 0.5) * dz;
+
             x2 = ((double)iCoord - 0.5) * dx;
             y2 = (double)jCoord * dy;
+            z2 = ((double)kCoord - 0.5) * dz;
             
-            double v_n = (1.0 / (dx * dy)) *
+            double v_n = (1.0 / (dx * dy * dz)) *
-                        ((x2 - x) * (y2 - y) * V(iCoord - 1, jCoord - 1) +
+                        (
-                            (x - x1) * (y2 - y) * V(iCoord, jCoord - 1) +
+                        (x2 - x) * (y2 - y) * (z2 - z) * V(iCoord - 1, jCoord - 1, kCoord - 1) +
-                            (x2 - x) * (y - y1) * V(iCoord - 1, jCoord) +
+                        (x - x1) * (y2 - y) * (z2 - z) * V(iCoord, jCoord - 1, kCoord - 1) +
-                            (x - x1) * (y - y1) * V(iCoord, jCoord));
+                        (x2 - x) * (y - y1) * (z2 - z) * V(iCoord - 1, jCoord, kCoord - 1) +
+                        (x - x1) * (y - y1) * (z2 - z) * V(iCoord, jCoord, kCoord - 1) +
+                        (x2 - x) * (y2 - y) * (z - z1) * V(iCoord - 1, jCoord - 1, kCoord) +
+                        (x - x1) * (y2 - y) * (z - z1) * V(iCoord, jCoord - 1, kCoord) +
+                        (x2 - x) * (y - y1) * (z - z1) * V(iCoord - 1, jCoord, kCoord) +
+                        (x - x1) * (y - y1) * (z - z1) * V(iCoord, jCoord, kCoord)
+                        );
 
             double new_y = y + particletracer->dt * v_n;
             particletracer->particlePool[i].y = new_y;
 
+            iCoord = (int)((x + 0.5 * dx) / dx) + 1;
+            jCoord = (int)((y + 0.5 * dy) / dy) + 1;
+            kCoord = (int)(z / dz) + 1;
+
+            x1 = ((double)(iCoord - 1) - 0.5) * dx;
+            y1 = ((double)(jCoord - 1) - 0.5) * dy;
+            z1 = (double)(kCoord - 1) * dz;
+
+            x2 = ((double)iCoord - 0.5) * dx;
+            y2 = ((double)jCoord - 0.5) * dy;
+            z2 = (double)kCoord * dz;
+            
+            double w_n = (1.0 / (dx * dy * dz)) *
+                        (
+                        (x2 - x) * (y2 - y) * (z2 - z) * W(iCoord - 1, jCoord - 1, kCoord - 1) +
+                        (x - x1) * (y2 - y) * (z2 - z) * W(iCoord, jCoord - 1, kCoord - 1) +
+                        (x2 - x) * (y - y1) * (z2 - z) * W(iCoord - 1, jCoord, kCoord - 1) +
+                        (x - x1) * (y - y1) * (z2 - z) * W(iCoord, jCoord, kCoord - 1) +
+                        (x2 - x) * (y2 - y) * (z - z1) * W(iCoord - 1, jCoord - 1, kCoord) +
+                        (x - x1) * (y2 - y) * (z - z1) * W(iCoord, jCoord - 1, kCoord) +
+                        (x2 - x) * (y - y1) * (z - z1) * W(iCoord - 1, jCoord, kCoord) +
+                        (x - x1) * (y - y1) * (z - z1) * W(iCoord, jCoord, kCoord)
+                        );
+
+            double new_z = z + particletracer->dt * w_n;
+            particletracer->particlePool[i].z = new_z;
+
             // printf("\tOld X : %.2f, New X : %.2f, iCoord : %d\n\tOld Y : %.2f, New Y : %.2f, jCoord : %d\n\n", x, new_x, iCoord, y, new_y, jCoord);
             // printf("\tU(iCoord - 1, jCoord - 1) : %.2f, U(iCoord, jCoord - 1) : %.2f, U(iCoord - 1, jCoord) : %.2f, U(iCoord, jCoord) : %.2f\n", U(iCoord - 1, jCoord - 1), U(iCoord, jCoord - 1), U(iCoord - 1, jCoord), U(iCoord, jCoord));
             // printf("\tV(iCoord - 1, jCoord - 1) : %.2f, V(iCoord, jCoord - 1) : %.2f, V(iCoord - 1, jCoord) : %.2f, V(iCoord, jCoord) : %.2f\n\n", V(iCoord - 1, jCoord - 1), V(iCoord, jCoord - 1), V(iCoord - 1, jCoord), V(iCoord, jCoord));
@@ -98,7 +156,7 @@ void advanceParticles(ParticleTracer* particletracer, double* restrict u, double
             // printf("\t j-1 * (imax + 2) + i-1 = %d with element from U : %.2f", (jCoord - 1) * (200 + 2) + (iCoord - 1), u[(jCoord - 1) * (imax + 2) + (iCoord - 1)]);
             // printf("\nimax : %d, jmax : %d\n", imax, jmax);
 
-            if (((new_x < 0.0) || (new_x > xlength) || (new_y < 0.0) || (new_y > ylength)))
+            if (((new_x < 0.0) || (new_x > xlength) || (new_y < 0.0) || (new_y > ylength) || (new_z < 0.0) || (new_z > zlength)))
             {
                 particletracer->particlePool[i].flag = false;
             }
@@ -114,36 +172,13 @@ void freeParticles(ParticleTracer* particletracer)
 
 void writeParticles(ParticleTracer* particletracer, Solver* solver)
 {
-    VtkOptions opts = { .solver = solver, .particletracer = particletracer };
+    VtkOptions opts = { .particletracer = particletracer };
 
     char filename[50];
     snprintf(filename, 50, "vtk_files/particles%d.vtk", ts);
-    vtkOpen(&opts, filename, ts);
+    vtkOpenPT(&opts, filename, ts);
     vtkParticle(&opts, "particle");
     vtkClose(&opts);
-
-    FILE* fp;
-    Particle* particlePool = particletracer->particlePool;
-
-    snprintf(filename, 50, "vis_files/particles_%d.dat", ts);
-    fp = fopen(filename, "w");
-
-    if (fp == NULL) {
-        printf("Error!\n");
-        exit(EXIT_FAILURE);
-    }
-
-    for (int i = 0; i < particletracer->totalParticles; ++i)
-    {
-         if(particlePool[i].flag == true)
-        {
-            double x = particlePool[i].x;
-            double y = particlePool[i].y;
-            fprintf(fp, "%f %f\n", x, y);
-        }
-    }
-    fclose(fp);
-
     ++ts;
 }
 

BasicSolver/3D-seq/src/vtkWriter.c

@@ -130,3 +130,82 @@ void vtkClose(VtkOptions* o)
     fclose(o->fh);
     o->fh = NULL;
 }
+
+static void writeHeaderPT(VtkOptions* o, int ts)
+{
+    fprintf(o->fh, "# vtk DataFile Version 3.0\n");
+    fprintf(o->fh, "PAMPI cfd solver particle tracing file\n");
+    if (o->fmt == ASCII) {
+        fprintf(o->fh, "ASCII\n");
+    } else if (o->fmt == BINARY) {
+        fprintf(o->fh, "BINARY\n");
+    }
+
+    fprintf(o->fh, "DATASET UNSTRUCTURED_GRID\n");
+    fprintf(o->fh, "FIELD FieldData 2\n");
+    fprintf(o->fh, "TIME 1 1 double\n");
+    fprintf(o->fh, "%d\n", ts);
+    fprintf(o->fh, "CYCLE 1 1 int\n");
+    fprintf(o->fh, "1\n");
+}
+
+void vtkOpenPT(VtkOptions* o, char* problem, int ts)
+{
+    o->fh = fopen(problem, "w");
+
+    if (o->fh == NULL) {
+        printf("vtkWriter not initialize! Call vtkOpen first!\n");
+        exit(EXIT_FAILURE);
+    }
+
+    writeHeaderPT(o, ts);
+
+    printf("Writing VTK output for %s\n", problem);
+}
+
+void vtkParticle(VtkOptions* o, char* name)
+{
+    Particle* particlePool = o->particletracer->particlePool;
+
+    if (o->fh == NULL) {
+        printf("vtkWriter not initialize! Call vtkOpen first!\n");
+        exit(EXIT_FAILURE);
+    }
+
+    fprintf(o->fh, "POINTS %d float\n", o->particletracer->totalParticles);
+
+
+    for (int i = 0; i < o->particletracer->totalParticles; ++i)
+    {
+        if(particlePool[i].flag == true)
+        {
+            double x = particlePool[i].x;
+            double y = particlePool[i].y;
+            double z = particlePool[i].z;
+            fprintf(o->fh, "%.2f %.2f %.2f\n", x, y, z);
+        }
+    }
+
+    fprintf(o->fh, "CELLS %d %d\n", o->particletracer->totalParticles, 2 * o->particletracer->totalParticles);
+
+
+    for (int i = 0, j = 0; i < o->particletracer->totalParticles; ++i)
+    {
+        if(particlePool[i].flag == true)
+        {
+            fprintf(o->fh, "1 %d\n", j);
+            ++j;
+        }
+    }
+
+    fprintf(o->fh, "CELL_TYPES %d\n", o->particletracer->totalParticles);
+
+
+    for (int i = 0; i < o->particletracer->totalParticles; ++i)
+    {
+        if(particlePool[i].flag == true)
+        {
+            fprintf(o->fh, "1\n");
+        }
+    }
+}

BasicSolver/3D-seq/src/vtkWriter.h

@@ -7,7 +7,7 @@
 #ifndef __VTKWRITER_H_
 #define __VTKWRITER_H_
 #include <stdio.h>
-
+#include "particletracing.h"
 #include "grid.h"
 
 typedef enum VtkFormat { ASCII = 0, BINARY } VtkFormat;
@@ -16,6 +16,7 @@ typedef struct VtkOptions {
     VtkFormat fmt;
     Grid grid;
     FILE* fh;
+    ParticleTracer* particletracer;
 } VtkOptions;
 
 typedef struct VtkVector {
@@ -26,4 +27,7 @@ extern void vtkOpen(VtkOptions* opts, char* filename);
 extern void vtkVector(VtkOptions* opts, char* name, VtkVector vec);
 extern void vtkScalar(VtkOptions* opts, char* name, double* p);
 extern void vtkClose(VtkOptions* opts);
+
+extern void vtkOpenPT(VtkOptions* opts, char* filename, int ts);
+extern void vtkParticle(VtkOptions* opts, char* name);
 #endif // __VTKWRITER_H_

BasicSolver/3D-seq/vtk_files/particles0.vtk

@@ -0,0 +1,102 @@
+# vtk DataFile Version 3.0
+PAMPI cfd solver particle tracing file
+ASCII
+DATASET UNSTRUCTURED_GRID
+FIELD FieldData 2
+TIME 1 1 double
+0
+CYCLE 1 1 int
+1
+POINTS 30 float
+1.00 4.00 0.00
+1.00 3.86 0.00
+1.00 3.72 0.00
+1.00 3.59 0.00
+1.00 3.45 0.00
+1.00 3.31 0.00
+1.00 3.17 0.00
+1.00 3.03 0.00
+1.00 2.90 0.00
+1.00 2.76 0.00
+1.00 2.62 0.00
+1.00 2.48 0.00
+1.00 2.34 0.00
+1.00 2.21 0.00
+1.00 2.07 0.00
+1.00 1.93 0.00
+1.00 1.79 0.00
+1.00 1.66 0.00
+1.00 1.52 0.00
+1.00 1.38 0.00
+1.00 1.24 0.00
+1.00 1.10 0.00
+1.00 0.97 0.00
+1.00 0.83 0.00
+1.00 0.69 0.00
+1.00 0.55 0.00
+1.00 0.41 0.00
+1.00 0.28 0.00
+1.00 0.14 0.00
+1.00 0.00 0.00
+CELLS 30 60
+1 0
+1 1
+1 2
+1 3
+1 4
+1 5
+1 6
+1 7
+1 8
+1 9
+1 10
+1 11
+1 12
+1 13
+1 14
+1 15
+1 16
+1 17
+1 18
+1 19
+1 20
+1 21
+1 22
+1 23
+1 24
+1 25
+1 26
+1 27
+1 28
+1 29
+CELL_TYPES 30
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1

BasicSolver/3D-seq/vtk_files/particles1.vtk

@@ -0,0 +1,192 @@
+# vtk DataFile Version 3.0
+PAMPI cfd solver particle tracing file
+ASCII
+DATASET UNSTRUCTURED_GRID
+FIELD FieldData 2
+TIME 1 1 double
+1
+CYCLE 1 1 int
+1
+POINTS 60 float
+1.03 4.00 0.00
+1.01 3.86 0.00
+1.00 3.72 0.00
+1.00 3.59 0.00
+1.00 3.45 0.00
+1.00 3.31 0.00
+1.00 3.17 0.00
+1.00 3.03 0.00
+1.00 2.90 0.00
+1.00 2.76 0.00
+1.00 2.62 0.00
+1.00 2.48 0.00
+1.00 2.34 0.00
+1.00 2.21 0.00
+1.00 2.07 0.00
+1.00 1.93 0.00
+1.00 1.79 0.00
+1.00 1.66 0.00
+1.00 1.52 0.00
+1.00 1.38 0.00
+1.00 1.24 0.00
+1.00 1.10 0.00
+1.00 0.97 0.00
+1.00 0.83 0.00
+1.00 0.69 0.00
+1.00 0.55 0.00
+1.00 0.41 0.00
+1.00 0.28 0.00
+1.01 0.14 0.00
+1.03 0.00 0.00
+1.00 4.00 0.00
+1.00 3.86 0.00
+1.00 3.72 0.00
+1.00 3.59 0.00
+1.00 3.45 0.00
+1.00 3.31 0.00
+1.00 3.17 0.00
+1.00 3.03 0.00
+1.00 2.90 0.00
+1.00 2.76 0.00
+1.00 2.62 0.00
+1.00 2.48 0.00
+1.00 2.34 0.00
+1.00 2.21 0.00
+1.00 2.07 0.00
+1.00 1.93 0.00
+1.00 1.79 0.00
+1.00 1.66 0.00
+1.00 1.52 0.00
+1.00 1.38 0.00
+1.00 1.24 0.00
+1.00 1.10 0.00
+1.00 0.97 0.00
+1.00 0.83 0.00
+1.00 0.69 0.00
+1.00 0.55 0.00
+1.00 0.41 0.00
+1.00 0.28 0.00
+1.00 0.14 0.00
+1.00 0.00 0.00
+CELLS 60 120
+1 0
+1 1
+1 2
+1 3
+1 4
+1 5
+1 6
+1 7
+1 8
+1 9
+1 10
+1 11
+1 12
+1 13
+1 14
+1 15
+1 16
+1 17
+1 18
+1 19
+1 20
+1 21
+1 22
+1 23
+1 24
+1 25
+1 26
+1 27
+1 28
+1 29
+1 30
+1 31
+1 32
+1 33
+1 34
+1 35
+1 36
+1 37
+1 38
+1 39
+1 40
+1 41
+1 42
+1 43
+1 44
+1 45
+1 46
+1 47
+1 48
+1 49
+1 50
+1 51
+1 52
+1 53
+1 54
+1 55
+1 56
+1 57
+1 58
+1 59
+CELL_TYPES 60
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1
+1

BasicSolver/3D-seq/vtk_files/particles2.vtk

@@ -0,0 +1,282 @@
+# vtk DataFile Version 3.0
+PAMPI cfd solver particle tracing file
+ASCII
+DATASET UNSTRUCTURED_GRID
+FIELD FieldData 2
+TIME 1 1 double
+2
+CYCLE 1 1 int
+1
+POINTS 90 float
+1.06 4.00 0.00
+1.02 3.86 0.00
+1.00 3.72 0.00
+1.00 3.59 0.00
+1.00 3.45 0.00
+1.00 3.31 0.00
+1.00 3.17 0.00
+1.00 3.03 0.00
+1.00 2.90 0.00
+1.00 2.76 0.00
+1.00 2.62 0.00
+1.00 2.48 0.00
+1.00 2.34 0.00
+1.00 2.21 0.00
+1.00 2.07 0.00
+1.00 1.93 0.00
+1.00 1.79 0.00
+1.00 1.66 0.00
+1.00 1.52 0.00
+1.00 1.38 0.00
+1.00 1.24 0.00
+1.00 1.10 0.00
+1.00 0.97 0.00
+1.00 0.83 0.00
+1.00 0.69 0.00
+1.00 0.55 0.00
+1.00 0.41 0.00
+1.00 0.28 0.00
+1.02 0.14 0.00
+1.06 0.00 0.00
+1.03 4.00 0.00
+1.01 3.86 0.00
+1.00 3.72 0.00
+1.00 3.59 0.00
+1.00 3.45 0.00
+1.00 3.31 0.00
+1.00 3.17 0.00
+1.00 3.03 0.00
+1.00 2.90 0.00
+1.00 2.76 0.00
+1.00 2.62 0.00
+1.00 2.48 0.00
+1.00 2.34 0.00
+1.00 2.21 0.00
+1.00 2.07 0.00
+1.00 1.93 0.00
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BasicSolver/3D-seq/vtk_files/particles3.vtk

@@ -0,0 +1,372 @@
+# vtk DataFile Version 3.0
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BasicSolver/3D-seq/vtk_files/particles4.vtk

@@ -0,0 +1,462 @@
+# vtk DataFile Version 3.0
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BasicSolver/3D-seq/vtk_files/particles5.vtk

@@ -0,0 +1,552 @@
+# vtk DataFile Version 3.0
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BasicSolver/3D-seq/vtk_files/particles6.vtk

@@ -0,0 +1,642 @@
+# vtk DataFile Version 3.0
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BasicSolver/3D-seq/vtk_files/particles7.vtk

@@ -0,0 +1,732 @@
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@@ -0,0 +1,822 @@
+# vtk DataFile Version 3.0
+PAMPI cfd solver particle tracing file
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@@ -0,0 +1,912 @@
+# vtk DataFile Version 3.0
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