#include #include #include #include void write_data_to_vtk_file(const char *filename, Atom* atom, int timestep) { write_local_atoms_to_vtk_file(filename, atom, timestep); write_ghost_atoms_to_vtk_file(filename, atom, timestep); write_local_cluster_edges_to_vtk_file(filename, atom, timestep); write_ghost_cluster_edges_to_vtk_file(filename, atom, timestep); } int write_local_atoms_to_vtk_file(const char* filename, Atom* atom, int timestep) { char timestep_filename[128]; snprintf(timestep_filename, sizeof timestep_filename, "%s_local_%d.vtk", filename, timestep); FILE* fp = fopen(timestep_filename, "wb"); if(fp == NULL) { fprintf(stderr, "Could not open VTK file for writing!\n"); return -1; } fprintf(fp, "# vtk DataFile Version 2.0\n"); fprintf(fp, "Particle data\n"); fprintf(fp, "ASCII\n"); fprintf(fp, "DATASET UNSTRUCTURED_GRID\n"); fprintf(fp, "POINTS %d double\n", atom->Nlocal); for(int ci = 0; ci < atom->Nclusters_local; ++ci) { MD_FLOAT *cptr = cluster_pos_ptr(ci); for(int cii = 0; cii < atom->clusters[ci].natoms; ++cii) { fprintf(fp, "%.4f %.4f %.4f\n", cluster_x(cptr, cii), cluster_y(cptr, cii), cluster_z(cptr, cii)); } } fprintf(fp, "\n\n"); fprintf(fp, "CELLS %d %d\n", atom->Nlocal, atom->Nlocal * 2); for(int i = 0; i < atom->Nlocal; ++i) { fprintf(fp, "1 %d\n", i); } fprintf(fp, "\n\n"); fprintf(fp, "CELL_TYPES %d\n", atom->Nlocal); for(int i = 0; i < atom->Nlocal; ++i) { fprintf(fp, "1\n"); } fprintf(fp, "\n\n"); fprintf(fp, "POINT_DATA %d\n", atom->Nlocal); fprintf(fp, "SCALARS mass double\n"); fprintf(fp, "LOOKUP_TABLE default\n"); for(int i = 0; i < atom->Nlocal; i++) { fprintf(fp, "1.0\n"); } fprintf(fp, "\n\n"); fclose(fp); return 0; } int write_ghost_atoms_to_vtk_file(const char* filename, Atom* atom, int timestep) { char timestep_filename[128]; snprintf(timestep_filename, sizeof timestep_filename, "%s_ghost_%d.vtk", filename, timestep); FILE* fp = fopen(timestep_filename, "wb"); if(fp == NULL) { fprintf(stderr, "Could not open VTK file for writing!\n"); return -1; } fprintf(fp, "# vtk DataFile Version 2.0\n"); fprintf(fp, "Particle data\n"); fprintf(fp, "ASCII\n"); fprintf(fp, "DATASET UNSTRUCTURED_GRID\n"); fprintf(fp, "POINTS %d double\n", atom->Nghost); for(int ci = atom->Nclusters_local; ci < atom->Nclusters_local + atom->Nclusters_ghost; ++ci) { MD_FLOAT *cptr = cluster_pos_ptr(ci); for(int cii = 0; cii < atom->clusters[ci].natoms; ++cii) { fprintf(fp, "%.4f %.4f %.4f\n", cluster_x(cptr, cii), cluster_y(cptr, cii), cluster_z(cptr, cii)); } } fprintf(fp, "\n\n"); fprintf(fp, "CELLS %d %d\n", atom->Nghost, atom->Nghost * 2); for(int i = 0; i < atom->Nghost; ++i) { fprintf(fp, "1 %d\n", i); } fprintf(fp, "\n\n"); fprintf(fp, "CELL_TYPES %d\n", atom->Nghost); for(int i = 0; i < atom->Nghost; ++i) { fprintf(fp, "1\n"); } fprintf(fp, "\n\n"); fprintf(fp, "POINT_DATA %d\n", atom->Nghost); fprintf(fp, "SCALARS mass double\n"); fprintf(fp, "LOOKUP_TABLE default\n"); for(int i = 0; i < atom->Nghost; i++) { fprintf(fp, "1.0\n"); } fprintf(fp, "\n\n"); fclose(fp); return 0; } int write_local_cluster_edges_to_vtk_file(const char* filename, Atom* atom, int timestep) { char timestep_filename[128]; snprintf(timestep_filename, sizeof timestep_filename, "%s_local_edges_%d.vtk", filename, timestep); FILE* fp = fopen(timestep_filename, "wb"); int N = atom->Nclusters_local; int tot_lines = 0; int i = 0; if(fp == NULL) { fprintf(stderr, "Could not open VTK file for writing!\n"); return -1; } fprintf(fp, "# vtk DataFile Version 2.0\n"); fprintf(fp, "Particle data\n"); fprintf(fp, "ASCII\n"); fprintf(fp, "DATASET POLYDATA\n"); fprintf(fp, "POINTS %d double\n", atom->Nlocal); for(int ci = 0; ci < N; ++ci) { MD_FLOAT *cptr = cluster_pos_ptr(ci); for(int cii = 0; cii < atom->clusters[ci].natoms; ++cii) { fprintf(fp, "%.4f %.4f %.4f\n", cluster_x(cptr, cii), cluster_y(cptr, cii), cluster_z(cptr, cii)); } tot_lines += atom->clusters[ci].natoms; } fprintf(fp, "\n\n"); fprintf(fp, "LINES %d %d\n", N, N + tot_lines); for(int ci = 0; ci < N; ++ci) { fprintf(fp, "%d ", atom->clusters[ci].natoms); for(int cii = 0; cii < atom->clusters[ci].natoms; ++cii) { fprintf(fp, "%d ", i++); } fprintf(fp, "\n"); } fprintf(fp, "\n\n"); fclose(fp); return 0; } int write_ghost_cluster_edges_to_vtk_file(const char* filename, Atom* atom, int timestep) { char timestep_filename[128]; snprintf(timestep_filename, sizeof timestep_filename, "%s_ghost_edges_%d.vtk", filename, timestep); FILE* fp = fopen(timestep_filename, "wb"); int N = atom->Nclusters_local + atom->Nclusters_ghost; int tot_lines = 0; int i = 0; if(fp == NULL) { fprintf(stderr, "Could not open VTK file for writing!\n"); return -1; } fprintf(fp, "# vtk DataFile Version 2.0\n"); fprintf(fp, "Particle data\n"); fprintf(fp, "ASCII\n"); fprintf(fp, "DATASET POLYDATA\n"); fprintf(fp, "POINTS %d double\n", atom->Nghost); for(int ci = atom->Nclusters_local; ci < N; ++ci) { MD_FLOAT *cptr = cluster_pos_ptr(ci); for(int cii = 0; cii < atom->clusters[ci].natoms; ++cii) { fprintf(fp, "%.4f %.4f %.4f\n", cluster_x(cptr, cii), cluster_y(cptr, cii), cluster_z(cptr, cii)); } tot_lines += atom->clusters[ci].natoms; } fprintf(fp, "\n\n"); fprintf(fp, "LINES %d %d\n", atom->Nclusters_ghost, atom->Nclusters_ghost + tot_lines); for(int ci = atom->Nclusters_local; ci < N; ++ci) { fprintf(fp, "%d ", atom->clusters[ci].natoms); for(int cii = 0; cii < atom->clusters[ci].natoms; ++cii) { fprintf(fp, "%d ", i++); } fprintf(fp, "\n"); } fprintf(fp, "\n\n"); fclose(fp); return 0; }