Commit Graph

342 Commits

Author SHA1 Message Date
JanLJL
95d63334fa added asm files and analysis output 2023-02-13 14:15:08 +01:00
JanLJL
d0277765c3 changed double constants to MD_FLOAT constants 2023-02-13 14:13:53 +01:00
Rafael Ravedutti
5814a86125 Small fixes
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2023-02-12 01:44:48 +01:00
JanLJL
98583cdade Merge branch 'master' of github.com:RRZE-HPC/MD-Bench 2023-02-09 17:33:42 +01:00
JanLJL
cb5598bc91 added static analysis and likwid files 2023-02-09 17:33:22 +01:00
JanLJL
3b076cdb49 changed double consts to MD_FLOAT 2023-02-09 17:33:07 +01:00
Rafael Ravedutti
122a23e2b8 Fix compilation error when not using explicit SIMD version
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2023-02-07 23:53:32 +01:00
Rafael Ravedutti
32e004944f Fix flags parsing for script
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2023-01-23 22:54:44 +01:00
Rafael Ravedutti
6126d74aa9 Change latency and CFG script to use binary as input
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2023-01-23 22:50:37 +01:00
Rafael Ravedutti
016f07dcaa Merge branch 'master' of github.com:RRZE-HPC/MD-Bench 2023-01-23 22:13:42 +01:00
Rafael Ravedutti
90f30d26a3 Add lammps-avx512 kernels without correction instructions
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2023-01-23 22:13:33 +01:00
rafaelravedutti
01cc05a5d6 Merge pull request #5 from scarboot/master
Move likwid marker calls into OpenMP parallel region
2023-01-22 17:20:02 +01:00
Yannick Paschke
c61cf9a0ac Move likwid marker calls into OpenMP parallel region 2023-01-22 15:33:05 +01:00
Rafael Ravedutti
d545ca65d4 Add -xHost option for AVX2
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2023-01-18 16:39:19 +01:00
Rafael Ravedutti
5833f00894 Change ICX flags based on ISA
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2023-01-16 23:13:40 +01:00
Rafael Ravedutti
8aad7e87a0 Use ISA for GCC flags and change binary and build directory names
Signed-off-by: Rafael Ravedutti <rafael.r.ravedutti@fau.de>
2023-01-16 23:05:21 +01:00
Rafael Ravedutti
ffad9d40f3 Use ICC compiler options based on ISA
Signed-off-by: Rafael Ravedutti <rafael.r.ravedutti@fau.de>
2023-01-16 22:45:24 +01:00
Rafael Ravedutti
99da76d59c Add flags with -march=core-avx2 for Milan
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2023-01-11 15:30:26 +01:00
Rafael Ravedutti
cfe888c132 Add analysis files from gromacs-avx512-dp with ICX compiler
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2023-01-03 16:14:28 +01:00
Rafael Ravedutti
c7b136f629 Fix build directories in .gitignore
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2023-01-03 16:13:26 +01:00
Rafael Ravedutti
07f2f74561 Adjust force_iters stats for 4xN kernel
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2023-01-02 23:57:51 +01:00
Rafael Ravedutti
fd368609e8 Remove binaries on cleanall
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2023-01-02 19:15:42 +01:00
Rafael Ravedutti
db5f8cf1c6 Update .gitignore
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2023-01-02 19:12:25 +01:00
Rafael Ravedutti
f467d10ed3 Add cleanall command for all TAG and OPT_SCHEME variants
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2023-01-02 19:11:05 +01:00
Rafael Ravedutti
fe86c948a8 Adjust time and likwid measurements on 4xN kernels
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2023-01-02 14:19:59 +01:00
Rafael Ravedutti
ae1cfa2800 Include static_analysis directory
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2023-01-02 14:14:16 +01:00
Rafael Ravedutti
e5c233e072 Update script
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-12-21 18:04:18 +01:00
Rafael Ravedutti
8d5e10f635 Fix compilation for gromacs-avx512-sp
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-12-21 16:19:00 +01:00
Rafael Ravedutti
56ff0d19af Run script with different prefetcher settings and provide better output
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-12-20 18:51:54 +01:00
Rafael Ravedutti
b20e8c6986 Adjust script for GROMACS scheme
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-12-14 17:54:18 +01:00
Rafael Ravedutti
15d43dcce5 Explicitly set half_neigh to zero on stubbed versions
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-12-14 17:21:09 +01:00
Rafael Ravedutti
292138b270 Write debug_printf to avoid warnings and fix latency/cfd script
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-12-14 16:17:28 +01:00
Rafael Ravedutti
0e952964f7 Update script
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-12-13 15:47:17 +01:00
Rafael Ravedutti
cd37746d07 Add script to automate latency and CFD evaluation
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-12-13 15:35:41 +01:00
Rafael Ravedutti
d76d044a00 Update build options for each compiler and include ICX
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-12-13 01:06:59 +01:00
Rafael Ravedutti
a7cb888517 Fix compilation for ICX compiler
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-12-13 00:59:31 +01:00
Rafael Ravedutti
416f042fc0 Fix readline() when fgets returns NULL even on success
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-11-30 17:43:35 +01:00
Rafael Ravedutti
fa4e38c6c4 Add IACA and stubbed measurements for GROMACS 4x8 FN kernel
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-11-18 01:00:20 +01:00
Rafael Ravedutti
04ea1b027e Print kernel and precision info in gromacs-stub
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-11-16 16:15:15 +01:00
Rafael Ravedutti
56d9613028 Implement stubbed version for GROMACS
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-11-15 16:01:13 +01:00
Rafael Ravedutti
bc06220aeb Remove AVX512 reciprocal usage in AVX2 file
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-11-15 01:40:37 +01:00
Rafael Ravedutti
efa462d0af Add AVX_FMA ISA
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-11-15 01:24:30 +01:00
Rafael Ravedutti
cd1fbfb3c8 Reorganize SIMD files and split AVX and AVX2
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-11-15 00:55:46 +01:00
Rafael Ravedutti
f293cec960 Call CPU version of updatePbc within setupPbc
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-11-14 19:19:57 +01:00
Rafael Ravedutti
6eedf1776e Small fixes into GROMACS GPU code
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-11-14 18:21:14 +01:00
Rafael Ravedutti
93188d1383 Adjust NVCC flags to avoid issues with atomicAdd with doubles
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-11-14 18:01:46 +01:00
Rafael Ravedutti
c70ebce4c1 Integrate GROMACS GPU implementation into master branch
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-11-08 18:33:23 +01:00
Rafael Ravedutti
493915fe95 Fix code for AVX and remove warnings
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-11-08 15:30:37 +01:00
Rafael Ravedutti
437b380229 Adjust NVCC flags
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-11-07 20:37:01 +01:00
Rafael Ravedutti
c4304e3619 Update figure widths again
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-09-29 18:41:40 +02:00