Commit Graph

16 Commits

Author SHA1 Message Date
Andropov Arsenii
182c065fe2 Neighbor list preparation 2023-05-09 00:44:37 +02:00
Andropov Arsenii
ee3f6de050 Building of super clusters complete, force computation kernel WIP 2023-04-11 02:55:30 +02:00
Rafael Ravedutti
493915fe95 Fix code for AVX and remove warnings
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-11-08 15:30:37 +01:00
Jan Eitzinger
3d0f4b97ee Switch copyright header in source files. 2022-09-05 10:39:42 +02:00
Rafael Ravedutti
d79c3c2a1d Add first working version with 4x8 config (ref kernel)
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-03-10 22:33:41 +01:00
Rafael Ravedutti
22d0f0b958 Commit version that works for M=N
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-03-10 01:31:50 +01:00
Rafael Ravedutti
2b441e691e Make code compilable
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-03-09 17:23:49 +01:00
Rafael Ravedutti
ba6785a865 Allow parameter reading from files and update data
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-03-05 03:21:52 +01:00
Rafael Ravedutti
aae29a5b5a Add code to read GRO files
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-03-03 20:03:33 +01:00
Rafael Ravedutti
1a708f2d3b Add PDB reading functions to lammps variant
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-02-24 15:17:51 +01:00
Rafael Ravedutti
d0ec9520f2 Write function to read PDB files and include data for Argon simulation
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-02-24 02:36:17 +01:00
Rafael Ravedutti
6ad1e58a3e Add first kernel using SIMD instrinsics for 4xn cases
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-02-02 18:00:44 +01:00
Rafael Ravedutti
6691803910 Add first version of force calculation with cluster scheme
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-01-28 18:07:41 +01:00
Rafael Ravedutti
a119fcdfdd Fix some segfaults and add function to update single atoms
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-01-27 03:07:31 +01:00
Rafael Ravedutti
6291709ae7 Add first draft code with GROMACS approach
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-01-25 00:43:10 +01:00
Rafael Ravedutti
df09c2861e Add first version with more than one optimization scheme
Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>
2022-01-17 14:15:02 +01:00