Rename default directory to lammps and reorganize gromacs variant steps

Signed-off-by: Rafael Ravedutti <rafaelravedutti@gmail.com>

lammps/timing.c

@@ -0,0 +1,43 @@
+/*
+ * =======================================================================================
+ *
+ *   Author:   Jan Eitzinger (je), jan.eitzinger@fau.de
+ *   Copyright (c) 2020 RRZE, University Erlangen-Nuremberg
+ *
+ *   This file is part of MD-Bench.
+ *
+ *   MD-Bench is free software: you can redistribute it and/or modify it
+ *   under the terms of the GNU Lesser General Public License as published
+ *   by the Free Software Foundation, either version 3 of the License, or
+ *   (at your option) any later version.
+ *
+ *   MD-Bench is distributed in the hope that it will be useful, but WITHOUT ANY
+ *   WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+ *   PARTICULAR PURPOSE.  See the GNU Lesser General Public License for more
+ *   details.
+ *
+ *   You should have received a copy of the GNU Lesser General Public License along
+ *   with MD-Bench.  If not, see <https://www.gnu.org/licenses/>.
+ * =======================================================================================
+ */
+#include <stdlib.h>
+#include <time.h>
+
+double getTimeStamp()
+{
+    struct timespec ts;
+    clock_gettime(CLOCK_MONOTONIC, &ts);
+    return (double)ts.tv_sec + (double)ts.tv_nsec * 1.e-9;
+}
+
+double getTimeResolution()
+{
+    struct timespec ts;
+    clock_getres(CLOCK_MONOTONIC, &ts);
+    return (double)ts.tv_sec + (double)ts.tv_nsec * 1.e-9;
+}
+
+double getTimeStamp_()
+{
+    return getTimeStamp();
+}