diff --git a/src/force.cu b/src/force.cu
index 8e61354..db3834c 100644
--- a/src/force.cu
+++ b/src/force.cu
@@ -20,6 +20,7 @@
* with MD-Bench. If not, see .
* =======================================================================================
*/
+#include
#include
#include
#include
@@ -37,7 +38,7 @@ extern "C" {
// cuda kernel
__global__ void calc_force(
- Atom *atom,
+ Atom a,
MD_FLOAT xtmp, MD_FLOAT ytmp, MD_FLOAT ztmp,
MD_FLOAT *fix, MD_FLOAT *fiy, MD_FLOAT *fiz,
int i, int numneighs, int *neighs) {
@@ -48,6 +49,8 @@ __global__ void calc_force(
return;
}
+ Atom *atom = &a;
+
int j = neighs[k];
MD_FLOAT delx = xtmp - atom_x(j);
MD_FLOAT dely = ytmp - atom_y(j);
@@ -109,30 +112,29 @@ double computeForce(
const int type_i = atom->type[i];
#endif
- Atom *c_atom;
- cudaMalloc((void**)&c_atom, sizeof(Atom));
- cudaMemcpy(c_atom, atom, sizeof(Atom), cudaMemcpyHostToDevice);
+ Atom c_atom;
+ memcpy(&c_atom, atom, sizeof(Atom));
- cudaMalloc((void**)&c_atom->x, sizeof(MD_FLOAT) * atom->Nmax * 3);
- cudaMemcpy(c_atom->x, atom->x, sizeof(MD_FLOAT) * atom->Nmax * 3, cudaMemcpyHostToDevice);
+ cudaMalloc((void**)&(&c_atom)->x, sizeof(MD_FLOAT) * atom->Nmax * 3);
+ cudaMemcpy(c_atom.x, atom->x, sizeof(MD_FLOAT) * atom->Nmax * 3, cudaMemcpyHostToDevice);
- cudaMalloc((void**)&c_atom->y, sizeof(MD_FLOAT) * atom->Nmax * 3);
- cudaMemcpy(c_atom->y, atom->y, sizeof(MD_FLOAT) * atom->Nmax * 3, cudaMemcpyHostToDevice);
+ cudaMalloc((void**)&(&c_atom)->y, sizeof(MD_FLOAT) * atom->Nmax * 3);
+ cudaMemcpy(c_atom.y, atom->y, sizeof(MD_FLOAT) * atom->Nmax * 3, cudaMemcpyHostToDevice);
- cudaMalloc((void**)&c_atom->z, sizeof(MD_FLOAT) * atom->Nmax * 3);
- cudaMemcpy(c_atom->z, atom->z, sizeof(MD_FLOAT) * atom->Nmax * 3, cudaMemcpyHostToDevice);
+ cudaMalloc((void**)&(&c_atom)->z, sizeof(MD_FLOAT) * atom->Nmax * 3);
+ cudaMemcpy(c_atom.z, atom->z, sizeof(MD_FLOAT) * atom->Nmax * 3, cudaMemcpyHostToDevice);
- cudaMalloc((void**)&c_atom->type, sizeof(int) * atom->Nmax);
- cudaMemcpy(c_atom->type, atom->type, sizeof(int) * atom->Nmax, cudaMemcpyHostToDevice);
+ cudaMalloc((void**)&(&c_atom)->type, sizeof(int) * atom->Nmax);
+ cudaMemcpy(c_atom.type, atom->type, sizeof(int) * atom->Nmax, cudaMemcpyHostToDevice);
- cudaMalloc((void**)&c_atom->epsilon, sizeof(MD_FLOAT) * atom->ntypes * atom->ntypes);
- cudaMemcpy(c_atom->epsilon, atom->epsilon, sizeof(MD_FLOAT) * atom->ntypes * atom->ntypes, cudaMemcpyHostToDevice);
+ cudaMalloc((void**)&(&c_atom)->epsilon, sizeof(MD_FLOAT) * atom->ntypes * atom->ntypes);
+ cudaMemcpy(c_atom.epsilon, atom->epsilon, sizeof(MD_FLOAT) * atom->ntypes * atom->ntypes, cudaMemcpyHostToDevice);
- cudaMalloc((void**)&c_atom->sigma6, sizeof(MD_FLOAT) * atom->ntypes * atom->ntypes);
- cudaMemcpy(c_atom->sigma6, atom->sigma6, sizeof(MD_FLOAT) * atom->ntypes * atom->ntypes, cudaMemcpyHostToDevice);
+ cudaMalloc((void**)&(&c_atom)->sigma6, sizeof(MD_FLOAT) * atom->ntypes * atom->ntypes);
+ cudaMemcpy(c_atom.sigma6, atom->sigma6, sizeof(MD_FLOAT) * atom->ntypes * atom->ntypes, cudaMemcpyHostToDevice);
- cudaMalloc((void**)&c_atom->cutforcesq, sizeof(MD_FLOAT) * atom->ntypes * atom->ntypes);
- cudaMemcpy(c_atom->cutforcesq, atom->cutforcesq, sizeof(MD_FLOAT) * atom->ntypes * atom->ntypes, cudaMemcpyHostToDevice);
+ cudaMalloc((void**)&(&c_atom)->cutforcesq, sizeof(MD_FLOAT) * atom->ntypes * atom->ntypes);
+ cudaMemcpy(c_atom.cutforcesq, atom->cutforcesq, sizeof(MD_FLOAT) * atom->ntypes * atom->ntypes, cudaMemcpyHostToDevice);
int *c_neighs;
cudaMalloc((void**)&c_neighs, sizeof(int) * numneighs);
@@ -144,8 +146,8 @@ double computeForce(
cudaMalloc((void**)&c_fiz, sizeof(MD_FLOAT) * numneighs);
const int num_blocks = 64;
- const int num_threads_per_block = numneighs / num_blocks;
- printf("numneighs: %d => num-blocks: %d, num_threads => %d\r\n", numneighs, num_blocks, num_threads_per_block);
+ const int num_threads_per_block = ceil((float)numneighs / (float)num_blocks);
+ // printf("numneighs: %d => num-blocks: %d, num_threads_per_block => %d\r\n", numneighs, num_blocks, num_threads_per_block);
// launch cuda kernel
calc_force <<< num_blocks, num_threads_per_block >>> (c_atom, xtmp, ytmp, ztmp, c_fix, c_fiy, c_fiz, i, numneighs, c_neighs);
@@ -156,9 +158,9 @@ double computeForce(
d_fix = (MD_FLOAT*)malloc(sizeof(MD_FLOAT) * numneighs);
d_fiy = (MD_FLOAT*)malloc(sizeof(MD_FLOAT) * numneighs);
d_fiz = (MD_FLOAT*)malloc(sizeof(MD_FLOAT) * numneighs);
- cudaMemcpy((void**)d_fix, c_fix, sizeof(MD_FLOAT) * numneighs, cudaMemcpyDeviceToHost);
- cudaMemcpy((void**)d_fiy, c_fiy, sizeof(MD_FLOAT) * numneighs, cudaMemcpyDeviceToHost);
- cudaMemcpy((void**)d_fiz, c_fiz, sizeof(MD_FLOAT) * numneighs, cudaMemcpyDeviceToHost);
+ cudaMemcpy((void**)&d_fix, c_fix, sizeof(MD_FLOAT) * numneighs, cudaMemcpyDeviceToHost);
+ cudaMemcpy((void**)&d_fiy, c_fiy, sizeof(MD_FLOAT) * numneighs, cudaMemcpyDeviceToHost);
+ cudaMemcpy((void**)&d_fiz, c_fiz, sizeof(MD_FLOAT) * numneighs, cudaMemcpyDeviceToHost);
for(int k = 0; k < numneighs; k++) {
fx[i] += d_fix[k];
@@ -166,14 +168,16 @@ double computeForce(
fz[i] += d_fiz[k];
}
- cudaFree(c_fix); cudaFree(c_fiy); cudaFree(c_fiz);
- cudaFree(c_atom); cudaFree(c_neighs);
+ cudaFree(c_fix); cudaFree(c_fiy); cudaFree(c_fiz); cudaFree(c_neighs);
+ cudaFree(c_atom.x); cudaFree(c_atom.y); cudaFree(c_atom.z); cudaFree(c_atom.type);
+ cudaFree(c_atom.epsilon); cudaFree(c_atom.sigma6); cudaFree(c_atom.cutforcesq);
+
+ free(d_fix); free(d_fiy); free(d_fiz);
}
LIKWID_MARKER_STOP("force");
double E = getTimeStamp();
return E-S;
- return 0;
}
}
\ No newline at end of file