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Update README and add json job formats
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Jan Eitzinger
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14
README.md
14
README.md
@ -1,2 +1,12 @@
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# File-specification
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Specification of file formats and directory structures
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# ClusterCockpit Standardization of APIs and data formats
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## RESTful API specifications
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The specifications are defined following the (https://www.openapis.org)[OpenAPI Initiative] format standard.
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## Data exchange formats
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Main data exchange format is JSON.
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The specifications are defined following the (https://json-schema.org)[JSON schema] format standard.
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## Database schemas
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50
dataformat/json/cluster.schema.json
Normal file
50
dataformat/json/cluster.schema.json
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{
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"$schema": "http://json-schema.org/draft-07/schema#",
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"title": "HPC Cluster description",
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"description": "Meta data information of a HPC cluster",
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"type": "object",
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"properties":{
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"cluster_id": {
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"description": "The unique identifier of a cluster",
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"type": "string"
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},
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"processor_type": {
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"description": "Processor type",
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"type": "string"
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},
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"sockets_per_node": {
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"description": "Number of sockets per node",
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"type": "integer"
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},
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"cores_per_socket": {
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"description": "Number of cores per socket",
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"type": "integer"
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},
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"threads_per_core": {
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"description": "Number of SMT threads per core",
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"type": "integer"
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},
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"flop_rate_scalar": {
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"description": "Theorethical node peak flop rate for scalar code in GFlops/s",
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"type": "integer"
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},
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"flop_rate_simd": {
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"description": "Theorethical node peak flop rate for SIMD code in GFlops/s",
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"type": "integer"
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},
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"memory_bandwidth": {
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"description": "Theorethical node peak memory bandwidth in GB/s",
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"type": "integer"
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}
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},
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"required":[
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"cluster_id",
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"processor_type",
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"sockets_per_node",
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"cores_per_socket",
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"threads_per_core",
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"flop_rate_scalar",
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"flop_rate_simd",
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"memory_bandwidth"
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]
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}
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135
dataformat/json/job-data.schema.json
Normal file
135
dataformat/json/job-data.schema.json
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{
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"$schema": "http://json-schema.org/draft-07/schema#",
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"title": "Job metric data",
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"description": "Meta data information of a HPC job",
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"type": "object",
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"properties": {
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"mem_used": {
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"description": "Memory capacity used (required)",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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},
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"flops_any": {
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"description": "Total flop rate with DP flops scaled up (required)",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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},
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"mem_bw": {
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"description": "Main memory bandwidth (required)",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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},
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"net_bw": {
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"description": "Total fast interconnect network bandwidth (required)",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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},
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"file_bw": {
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"description": "Total file IO bandwidth (required)",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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},
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"ipc": {
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"description": "Instructions executed per cycle",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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},
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"cpu_used": {
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"description": "CPU core utilization",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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},
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"flops_dp": {
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"description": "Double precision flop rate",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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},
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"flops_sp": {
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"description": "Single precision flops rate",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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},
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"rapl_power": {
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"description": "CPU power consumption",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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},
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"gpu_used": {
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"description": "GPU utilization",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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},
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"gpu_mem_used": {
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"description": "GPU memory capacity used",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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},
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"gpu_power": {
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"description": "GPU power consumption",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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},
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"clock": {
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"description": "Average core frequency",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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},
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"eth_read_bw": {
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"description": "Ethernet read bandwidth",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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},
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"eth_write_bw": {
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"description": "Ethernet write bandwidth",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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},
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"lustre_read_bw": {
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"description": "Lustre read bandwidth",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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},
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"lustre_write_bw": {
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"description": "Lustre write bandwidth",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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},
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"lustre_read_req": {
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"description": "Lustre read requests",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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},
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"lustre_write_req": {
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"description": "Lustre write requests",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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},
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"lustre_inodes": {
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"description": "Lustre inodes used",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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},
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"lustre_accesses": {
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"description": "Lustre open and close",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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},
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"lustre_fsync": {
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"description": "Lustre fsync",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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},
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"lustre_create": {
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"description": "Lustre create",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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},
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"lustre_open": {
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"description": "Lustre open",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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},
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"lustre_close": {
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"description": "Lustre close",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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},
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"lustre_seek": {
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"description": "Lustre seek",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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},
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"ib_read_bw": {
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"description": "Infiniband read bandwidth",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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},
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"ib_write_bw": {
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"description": "Infiniband write bandwidth",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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},
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"ib_congestion": {
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"description": "Infiniband congestion",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
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}
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},
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"required": [
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"mem_used",
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"flops_any",
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"mem_bw",
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"net_bw",
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"file_bw"
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]
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}
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238
dataformat/json/job-meta.schema.json
Normal file
238
dataformat/json/job-meta.schema.json
Normal file
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{
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"$schema": "http://json-schema.org/draft-07/schema#",
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"title": "Job meta data",
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"description": "Meta data information of a HPC job",
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"type": "object",
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"properties": {
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"job_id": {
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"description": "The unique identifier of a job",
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"type": "string"
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},
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"user_id": {
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"description": "The unique identifier of a user",
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"type": "string"
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},
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"project_id": {
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"description": "The unique identifier of a project",
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"type": "string"
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},
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"cluster_id": {
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"description": "The unique identifier of a cluster",
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"type": "string"
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},
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"num_nodes": {
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"description": "Number of nodes used",
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"type": "integer",
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"exclusiveMinimum": 0
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},
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"exclusive": {
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"description": "Job uses only exclusive nodes",
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"type": "boolean"
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},
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"walltime": {
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"description": "Requested walltime of job in seconds",
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"type": "integer",
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"exclusiveMinimum": 0
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},
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"job_state": {
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"description": "Final state of job",
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"type": "string",
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"enum": [
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"completed",
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"failed",
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"canceled",
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"timeout"
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]
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},
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"start_time": {
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"description": "Start epoch time stamp in seconds",
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"type": "integer",
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"exclusiveMinimum": 0
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},
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"stop_time": {
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"description": "Stop epoch time stamp in seconds",
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"type": "integer",
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"exclusiveMinimum": 0
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},
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"duration": {
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"description": "Duration of job in seconds",
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"type": "integer",
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"exclusiveMinimum": 0
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},
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"nodes": {
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"description": "List of nodes",
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"type": "array",
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"items": {
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"type": "string"
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},
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"minItems": 1,
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"uniqueItems": true
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},
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"tags": {
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"description": "List of tags",
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"type": "array",
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"items": {
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"type": "object",
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"properties": {
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"name": {
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"type": "string"
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},
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"type": {
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"type": "string"
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}
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},
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"required": [
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"name",
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"type"
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]
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},
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"uniqueItems": true
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},
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"statistics": {
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"description": "Job statistic data",
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"type": "object",
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"properties": {
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"mem_used": {
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"description": "Memory capacity used (required)",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
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},
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"flops_any": {
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"description": "Total flop rate with DP flops scaled up (required)",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
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},
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"mem_bw": {
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"description": "Main memory bandwidth (required)",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
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},
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"net_bw": {
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"description": "Total fast interconnect network bandwidth (required)",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
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},
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"file_bw": {
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"description": "Total file IO bandwidth (required)",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
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},
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"ipc": {
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"description": "Instructions executed per cycle",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
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},
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"cpu_used": {
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"description": "CPU core utilization",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
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},
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"flops_dp": {
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"description": "Double precision flop rate",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
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},
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"flops_sp": {
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"description": "Single precision flops rate",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
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},
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"rapl_power": {
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"description": "CPU power consumption",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
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},
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"gpu_used": {
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"description": "GPU utilization",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
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},
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"gpu_mem_used": {
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"description": "GPU memory capacity used",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
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},
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"gpu_power": {
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"description": "GPU power consumption",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
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},
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"clock": {
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"description": "Average core frequency",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
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},
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"eth_read_bw": {
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"description": "Ethernet read bandwidth",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
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},
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"eth_write_bw": {
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"description": "Ethernet write bandwidth",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
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},
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"lustre_read_bw": {
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"description": "Lustre read bandwidth",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
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},
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"lustre_write_bw": {
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"description": "Lustre write bandwidth",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
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},
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"lustre_read_req": {
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"description": "Lustre read requests",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
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},
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"lustre_write_req": {
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"description": "Lustre write requests",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
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},
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"lustre_inodes": {
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"description": "Lustre inodes used",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
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},
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"lustre_accesses": {
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"description": "Lustre open and close",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
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},
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"lustre_fsync": {
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"description": "Lustre fsync",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
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},
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"lustre_create": {
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"description": "Lustre create",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
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},
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"lustre_open": {
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"description": "Lustre open",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
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},
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"lustre_close": {
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"description": "Lustre close",
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"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
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},
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"lustre_seek": {
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"description": "Lustre seek",
|
||||
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
|
||||
},
|
||||
"ib_read_bw": {
|
||||
"description": "Infiniband read bandwidth",
|
||||
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
|
||||
},
|
||||
"ib_write_bw": {
|
||||
"description": "Infiniband write bandwidth",
|
||||
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
|
||||
},
|
||||
"ib_congestion": {
|
||||
"description": "Infiniband congestion",
|
||||
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
|
||||
}
|
||||
},
|
||||
"required": [
|
||||
"mem_used",
|
||||
"flops_any",
|
||||
"mem_bw",
|
||||
"net_bw",
|
||||
"file_bw"
|
||||
]
|
||||
}
|
||||
},
|
||||
"required": [
|
||||
"job_id",
|
||||
"user_id",
|
||||
"project_id",
|
||||
"cluster_id",
|
||||
"num_nodes",
|
||||
"start_time",
|
||||
"stop_time",
|
||||
"duration",
|
||||
"nodes",
|
||||
"tags",
|
||||
"statistics"
|
||||
]
|
||||
}
|
||||
83
dataformat/json/job-metric-data.schema.json
Normal file
83
dataformat/json/job-metric-data.schema.json
Normal file
@ -0,0 +1,83 @@
|
||||
{
|
||||
"$schema": "http://json-schema.org/draft-07/schema#",
|
||||
"title": "Job metric data",
|
||||
"description": "Metric data of a HPC job",
|
||||
"type": "object",
|
||||
"properties": {
|
||||
"unit": {
|
||||
"description": "",
|
||||
"type": "string"
|
||||
},
|
||||
"scope": {
|
||||
"description": "",
|
||||
"type": "string",
|
||||
"enum": [
|
||||
"node",
|
||||
"cpu",
|
||||
"socket"
|
||||
]
|
||||
},
|
||||
"timestep": {
|
||||
"description": "Measurement interval in seconds",
|
||||
"type": "integer"
|
||||
},
|
||||
"series": {
|
||||
"description": "",
|
||||
"type": "array",
|
||||
"items": {
|
||||
"type": "object",
|
||||
"properties": {
|
||||
"node_id": {
|
||||
"type": "string"
|
||||
},
|
||||
"id": {
|
||||
"type": "integer"
|
||||
},
|
||||
"statistics": {
|
||||
"type": "object",
|
||||
"properties": {
|
||||
"avg": {
|
||||
"description": "Series average",
|
||||
"type": "number",
|
||||
"minimum": 0
|
||||
},
|
||||
"min": {
|
||||
"description": "Series minimum",
|
||||
"type": "number",
|
||||
"minimum": 0
|
||||
},
|
||||
"max": {
|
||||
"description": "Series maximum",
|
||||
"type": "number",
|
||||
"minimum": 0
|
||||
}
|
||||
},
|
||||
"required": [
|
||||
"avg",
|
||||
"min",
|
||||
"max"
|
||||
]
|
||||
},
|
||||
"data": {
|
||||
"type": "array",
|
||||
"items": {
|
||||
"type": "number",
|
||||
"minimum": 0
|
||||
},
|
||||
"minItems": 1
|
||||
}
|
||||
},
|
||||
"required": [
|
||||
"node_id",
|
||||
"data"
|
||||
]
|
||||
}
|
||||
}
|
||||
},
|
||||
"required": [
|
||||
"unit",
|
||||
"scope",
|
||||
"timestep",
|
||||
"series"
|
||||
]
|
||||
}
|
||||
33
dataformat/json/job-statistic.schema.json
Normal file
33
dataformat/json/job-statistic.schema.json
Normal file
@ -0,0 +1,33 @@
|
||||
{
|
||||
"$schema": "http://json-schema.org/draft-07/schema#",
|
||||
"title": "Job statistics",
|
||||
"description": "Format specification for job metric statistics",
|
||||
"type": "object",
|
||||
"properties": {
|
||||
"unit": {
|
||||
"description": "Metric unit",
|
||||
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/unit.schema.json"
|
||||
},
|
||||
"avg": {
|
||||
"description": "Job metric average",
|
||||
"type": "number",
|
||||
"minimum": 0
|
||||
},
|
||||
"min": {
|
||||
"description": "Job metric minimum",
|
||||
"type": "number",
|
||||
"minimum": 0
|
||||
},
|
||||
"max": {
|
||||
"description": "Job metric maximum",
|
||||
"type": "number",
|
||||
"minimum": 0
|
||||
}
|
||||
},
|
||||
"required": [
|
||||
"unit",
|
||||
"avg",
|
||||
"min",
|
||||
"max"
|
||||
]
|
||||
}
|
||||
36
dataformat/json/unit.schema.json
Normal file
36
dataformat/json/unit.schema.json
Normal file
@ -0,0 +1,36 @@
|
||||
{
|
||||
"$schema": "http://json-schema.org/draft-07/schema#",
|
||||
"title": "Metric unit",
|
||||
"description": "Format specification for job metric units",
|
||||
"type": "object",
|
||||
"properties": {
|
||||
"base_unit": {
|
||||
"description": "Metric base unit",
|
||||
"type": "string",
|
||||
"enum": [
|
||||
"B",
|
||||
"F",
|
||||
"B/s",
|
||||
"F/s",
|
||||
"CPI",
|
||||
"IPC",
|
||||
"Hz",
|
||||
]
|
||||
},
|
||||
"prefix": {
|
||||
"description": "Unit prefix",
|
||||
"type": "string",
|
||||
"enum": [
|
||||
"K",
|
||||
"M",
|
||||
"G",
|
||||
"T",
|
||||
"P",
|
||||
"E"
|
||||
]
|
||||
}
|
||||
},
|
||||
"required": [
|
||||
"base_unit"
|
||||
]
|
||||
}
|
||||
10
dataformat/sql/jobDB-sqlite.sql
Normal file
10
dataformat/sql/jobDB-sqlite.sql
Normal file
@ -0,0 +1,10 @@
|
||||
CREATE TABLE job ( id INTEGER PRIMARY KEY,
|
||||
job_id TEXT, user_id TEXT, project_id TEXT, cluster_id TEXT,
|
||||
start_time INTEGER, stop_time INTEGER, duration INTEGER,
|
||||
walltime INTEGER, job_state TEXT,
|
||||
num_nodes INTEGER, node_list TEXT, has_profile INTEGER,
|
||||
mem_used_max REAL, flops_any_avg REAL, mem_bw_avg REAL, ib_bw_avg REAL, file_bw_avg REAL);
|
||||
CREATE TABLE tag ( id INTEGER PRIMARY KEY, tag_type TEXT, tag_name TEXT);
|
||||
CREATE TABLE jobtag ( job_id INTEGER, tag_id INTEGER, PRIMARY KEY (job_id, tag_id),
|
||||
FOREIGN KEY (job_id) REFERENCES job (id) ON DELETE CASCADE ON UPDATE NO ACTION,
|
||||
FOREIGN KEY (tag_id) REFERENCES tag (id) ON DELETE CASCADE ON UPDATE NO ACTION );
|
||||
Loading…
Reference in New Issue
Block a user