Update READMEs

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Lou Knauer 2022-07-20 16:04:36 +02:00
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[![Build & Test](https://github.com/ClusterCockpit/cc-metric-store/actions/workflows/test.yml/badge.svg)](https://github.com/ClusterCockpit/cc-metric-store/actions/workflows/test.yml) [![Build & Test](https://github.com/ClusterCockpit/cc-metric-store/actions/workflows/test.yml/badge.svg)](https://github.com/ClusterCockpit/cc-metric-store/actions/workflows/test.yml)
The cc-metric-store provides a simple in-memory time series database for storing metrics of cluster nodes at preconfigured intervals. It is meant to be used as part of the [ClusterCockpit suite](https://github.com/ClusterCockpit). As all data is kept in-memory (but written to disk as compressed JSON for long term storage), accessing it is very fast. It also provides aggregations over time *and* nodes/sockets/cpus. __*Why should I use this?*__
There are major limitations: Data only gets written to disk at periodic checkpoints, not as soon as it is received. The cc-metric-store is a simple in-memory time series "database" (not really) for storing metrics of cluster nodes at preconfigured intervals. It is meant to be used as part of the [ClusterCockpit suite](https://github.com/ClusterCockpit) and uses [this format of the InfluxDB line protocol](https://github.com/ClusterCockpit/cc-specifications/blob/master/metrics/lineprotocol_alternative.md) for writes. The APIs are not very generic and specially designed for the needs of ClusterCockpit, but can be generalised in the future.
Go look at the `TODO.md` file and the [GitHub Issues](https://github.com/ClusterCockpit/cc-metric-store/issues) for a progress overview. Things work, but are not properly tested. Assuming a cluster of 1000 nodes of two sockets and 72 cores, 60 samples per minute, 8 bytes per sample, 20 metrics per node, 10 metrics per socket and 20 per core, the total memory consuption for the metrics of the last 48 hours is ~32 GiB. Regular HPC jobs are not allowed to run longer than 48 hours, and a finished job's metrics is stored elsewhere in the stack. This motivates the use of an in-memory TSDB.
The [NATS.io](https://nats.io/) based writing endpoint consumes messages in [this format of the InfluxDB line protocol](https://github.com/ClusterCockpit/cc-specifications/blob/master/metrics/lineprotocol_alternative.md).
### REST API Endpoints This database also takes other shortcuts: There only is a single, hirachical index (`cluster` -> `host` -> ...), data is written to checkpoints regularly but there are no consitency guaranties, data is assumed to be inserted in an append-only manner (meaning only with increasing timestamps), and the exact time a measurement was taken is not stored, only in which interval it landed.
The REST API is documented in [openapi.yaml](./openapi.yaml) in the OpenAPI 3.0 format. The REST API is documented in [openapi.yaml](./openapi.yaml) in the OpenAPI 3.0 format.
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# ... # ...
``` ```
### TODOs
Write more tests and the things mentioned in the [internal's README.md](./internal/README.md).

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TODO.md
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# TODO
- Improve checkpoints/archives
- Store information in each buffer if already archived
- Do not create new checkpoint if all buffers already archived
- Missing Testcases:
- General tests
- Check for corner cases that should fail gracefully
- Write a more realistic `ToArchive`/`FromArchive` tests
- Optimization: Once a buffer is full, calculate min, max and avg
- Calculate averages buffer-wise, average weighted by length of buffer
- Only the head-buffer needs to be fully traversed
- Optimization: If aggregating over hwthreads/cores/sockets cache those results and reuse some of that for new queres aggregating only over the newer data
- ...

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# Internal Documentation
## Things I would like to improve...
While developing ClusterCockpit, there are a lot of things I learned and that I would change if redoing everything. Unfortunately, I did not have as much time as I hopped and a few things ended up a bit chaotic. This is partly because the requirements and features and metrics (and particularly their scopes) changed, PHP Symfony ate up a lot of dev. time, and it was my first big frontend. The frontend ended up particularly chaotic, but it works and I really like Svelte.
The `cc-metric-store`, in my opinion, however, is one of the more interesting aspects of the ClusterCockpit stack, with very very interesting and effective possibilities for improvement! It was created just in a span of two months and is successfully deployed for multiple clusters. Yes, trying to implement your own time-series data-base might be crazy and naive, but where would you do something like that if not in university? I personally would not even call the metric store a TSDB for now because it lacks a lot of features. However, in our defense: there are not that many open source in-memory TSDBs. The closest thing I found was a [redis extension](https://github.com/RedisTimeSeries/RedisTimeSeries), but it was lacking horizontal aggregation and other features. The core philosophy should not change and basically is __KISS__ (*keep it simple stupid*):
- Because of the job-archive, only the last 48h or so need to be stored in a TSDB. This means that even for large clusters with lots of cores, *storing everything in main-memory* is very much feasible.
- In case of a power outage etc, missing monitoring data is the least of the admins problems: *Redundancy and Consistency is not important*.
- The metrics are always written and queried along a simple hierarchy: `cluster -> host -> ...`. This means that *only a single tree-like index is needed* (aggregations along this hierarchy are common and need to be fast!).
- All measurements are done in fixed intervals. There is *no need to know exactly when something was measured*, only within what minute/"slot" a measurement was taken (a slot can cover 10s or so).
Here is a loose list of things I would do better if I could do it again. Please feel free to contact [lou.knauer@fau.de](mailto:lou.knauer@fau.de) before attempting to extend and improve this implementation. Because it is not much code and there still are lots of opportunities for improvement, in my opinion, it would make a good thesis of master project. If it is done well and the interface becomes truly generic and application independent, it could even become useful for others as well because, as I mentioned before, open-source in-memory TSDBs are not that common.
- Checkpoints/Archiving:
- Time-series data can be compressed using very delta-encoding or XORs with trailing/leading zeros: [The gorilla paper has some examples](https://www.vldb.org/pvldb/vol8/p1816-teller.pdf).
- A few large files are better than a lot of small ones (*ongoing work*).
- Use a binary file format instead of JSON for faster en-/decoding (*ongoing work*).
- Make archiving more flexible, allow to move archives into another DB (for long-term storage).
- API:
- Writing:
- Currently, the line-protocol decoder is very strongly coupled to the format used by ClusterCockpit. Make it more flexible and generic. *A single strict hierarchy is still a must!*.
- Blank TCP/TLS write endpoints: Keep-alive connections without the protocol-overhead of HTTP(S). JWT (and optionally default tags) must only be transfered once.
- Reading:
- Re-do the query API completely! Allow for much more komplex queries with proper query language, such as for example: `select(from: 2022-01-08T00:00:00, to: 2022-01-09T23:59:59) > filter(hostname: ["e0001", "e0002", ...]) > topology-aggregation("sum", ["core0", "core1", "core2", "core3"]) > transform(flops_any: flops_dp * 2 + flops_sp) > metrics(flops_any)`
- Internals:
- Not urgent because Go actually does quite a good job: rewrite in C/C++ or Rust (or another language without garbage collection)
- Alternatively: Implement a custom allocator for the chunks that bypasses GC and uses `mmap`.
- Combine chunk-head (start-time, frequency, is-checkpointed, ...) and payload slice in the same allocation?
- Calculate stats once after a chunk is closed.
- Implement all the things needed for efficient and more complex queries.
- ...