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AvroWriter advanced cases

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This commit is contained in:
Aditya Ujeniya 2025-05-14 12:24:58 +02:00
parent b53832a055
commit a03eb315f5
6 changed files with 482 additions and 16 deletions
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2
go.mod
View File

@ -18,8 +18,10 @@ require (
github.com/go-openapi/jsonreference v0.21.0 // indirect
github.com/go-openapi/spec v0.21.0 // indirect
github.com/go-openapi/swag v0.23.0 // indirect
github.com/golang/snappy v0.0.1 // indirect
github.com/josharian/intern v1.0.0 // indirect
github.com/klauspost/compress v1.17.9 // indirect
github.com/linkedin/goavro/v2 v2.13.1 // indirect
github.com/mailru/easyjson v0.7.7 // indirect
github.com/nats-io/nkeys v0.4.7 // indirect
github.com/nats-io/nuid v1.0.1 // indirect

10
go.sum
View File

@ -3,6 +3,7 @@ github.com/KyleBanks/depth v1.2.1/go.mod h1:jzSb9d0L43HxTQfT+oSA1EEp2q+ne2uh6Xge
github.com/cpuguy83/go-md2man/v2 v2.0.4 h1:wfIWP927BUkWJb2NmU/kNDYIBTh/ziUX91+lVfRxZq4=
github.com/cpuguy83/go-md2man/v2 v2.0.4/go.mod h1:tgQtvFlXSQOSOSIRvRPT7W67SCa46tRHOmNcaadrF8o=
github.com/creack/pty v1.1.9/go.mod h1:oKZEueFk5CKHvIhNR5MUki03XCEU+Q6VDXinZuGJ33E=
github.com/davecgh/go-spew v1.1.0/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38=
github.com/davecgh/go-spew v1.1.1 h1:vj9j/u1bqnvCEfJOwUhtlOARqs3+rkHYY13jYWTU97c=
github.com/davecgh/go-spew v1.1.1/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38=
github.com/frankban/quicktest v1.11.0/go.mod h1:K+q6oSqb0W0Ininfk863uOk1lMy69l/P6txr3mVT54s=
@ -19,6 +20,8 @@ github.com/go-openapi/swag v0.23.0 h1:vsEVJDUo2hPJ2tu0/Xc+4noaxyEffXNIs3cOULZ+Gr
github.com/go-openapi/swag v0.23.0/go.mod h1:esZ8ITTYEsH1V2trKHjAN8Ai7xHb8RV+YSZ577vPjgQ=
github.com/golang-jwt/jwt/v4 v4.5.0 h1:7cYmW1XlMY7h7ii7UhUyChSgS5wUJEnm9uZVTGqOWzg=
github.com/golang-jwt/jwt/v4 v4.5.0/go.mod h1:m21LjoU+eqJr34lmDMbreY2eSTRJ1cv77w39/MY0Ch0=
github.com/golang/snappy v0.0.1 h1:Qgr9rKW7uDUkrbSmQeiDsGa8SjGyCOGtuasMWwvp2P4=
github.com/golang/snappy v0.0.1/go.mod h1:/XxbfmMg8lxefKM7IXC3fBNl/7bRcc72aCRzEWrmP2Q=
github.com/google/go-cmp v0.5.2/go.mod h1:v8dTdLbMG2kIc/vJvl+f65V22dbkXbowE6jgT/gNBxE=
github.com/google/go-cmp v0.5.5/go.mod h1:v8dTdLbMG2kIc/vJvl+f65V22dbkXbowE6jgT/gNBxE=
github.com/google/go-cmp v0.5.9/go.mod h1:17dUlkBOakJ0+DkrSSNjCkIjxS6bF9zb3elmeNGIjoY=
@ -44,6 +47,8 @@ github.com/kr/pty v1.1.1/go.mod h1:pFQYn66WHrOpPYNljwOMqo10TkYh1fy3cYio2l3bCsQ=
github.com/kr/text v0.1.0/go.mod h1:4Jbv+DJW3UT/LiOwJeYQe1efqtUx/iVham/4vfdArNI=
github.com/kr/text v0.2.0 h1:5Nx0Ya0ZqY2ygV366QzturHI13Jq95ApcVaJBhpS+AY=
github.com/kr/text v0.2.0/go.mod h1:eLer722TekiGuMkidMxC/pM04lWEeraHUUmBw8l2grE=
github.com/linkedin/goavro/v2 v2.13.1 h1:4qZ5M0QzQFDRqccsroJlgOJznqAS/TpdvXg55h429+I=
github.com/linkedin/goavro/v2 v2.13.1/go.mod h1:KXx+erlq+RPlGSPmLF7xGo6SAbh8sCQ53x064+ioxhk=
github.com/mailru/easyjson v0.7.7 h1:UGYAvKxe3sBsEDzO8ZeWOSlIQfWFlxbzLZe7hwFURr0=
github.com/mailru/easyjson v0.7.7/go.mod h1:xzfreul335JAWq5oZzymOObrkdz5UnU4kGfJJLY9Nlc=
github.com/nats-io/nats.go v1.36.0 h1:suEUPuWzTSse/XhESwqLxXGuj8vGRuPRoG7MoRN/qyU=
@ -59,6 +64,10 @@ github.com/rogpeppe/go-internal v1.11.0 h1:cWPaGQEPrBb5/AsnsZesgZZ9yb1OQ+GOISoDN
github.com/rogpeppe/go-internal v1.11.0/go.mod h1:ddIwULY96R17DhadqLgMfk9H9tvdUzkipdSkR5nkCZA=
github.com/russross/blackfriday/v2 v2.1.0 h1:JIOH55/0cWyOuilr9/qlrm0BSXldqnqwMsf35Ld67mk=
github.com/russross/blackfriday/v2 v2.1.0/go.mod h1:+Rmxgy9KzJVeS9/2gXHxylqXiyQDYRxCVz55jmeOWTM=
github.com/stretchr/objx v0.1.0/go.mod h1:HFkY916IF+rwdDfMAkV7OtwuqBVzrE8GR6GFx+wExME=
github.com/stretchr/objx v0.4.0/go.mod h1:YvHI0jy2hoMjB+UWwv71VJQ9isScKT/TqJzVSSt89Yw=
github.com/stretchr/testify v1.7.1/go.mod h1:6Fq8oRcR53rry900zMqJjRRixrwX3KX962/h/Wwjteg=
github.com/stretchr/testify v1.7.5/go.mod h1:yNjHg4UonilssWZ8iaSj1OCr/vHnekPRkoO+kdMU+MU=
github.com/stretchr/testify v1.9.0 h1:HtqpIVDClZ4nwg75+f6Lvsy/wHu+3BoSGCbBAcpTsTg=
github.com/stretchr/testify v1.9.0/go.mod h1:r2ic/lqez/lEtzL7wO/rwa5dbSLXVDPFyf8C91i36aY=
github.com/swaggo/files v1.0.1 h1:J1bVJ4XHZNq0I46UU90611i9/YzdrF7x92oX1ig5IdE=
@ -117,6 +126,7 @@ gopkg.in/check.v1 v0.0.0-20161208181325-20d25e280405/go.mod h1:Co6ibVJAznAaIkqp8
gopkg.in/check.v1 v1.0.0-20200227125254-8fa46927fb4f/go.mod h1:Co6ibVJAznAaIkqp8huTwlJQCZ016jof/cbN4VW5Yz0=
gopkg.in/check.v1 v1.0.0-20201130134442-10cb98267c6c h1:Hei/4ADfdWqJk1ZMxUNpqntNwaWcugrBjAiHlqqRiVk=
gopkg.in/check.v1 v1.0.0-20201130134442-10cb98267c6c/go.mod h1:JHkPIbrfpd72SG/EVd6muEfDQjcINNoR0C8j2r3qZ4Q=
gopkg.in/yaml.v3 v3.0.0-20200313102051-9f266ea9e77c/go.mod h1:K4uyk7z7BCEPqu6E+C64Yfv1cQ7kz7rIZviUmN+EgEM=
gopkg.in/yaml.v3 v3.0.0-20200615113413-eeeca48fe776/go.mod h1:K4uyk7z7BCEPqu6E+C64Yfv1cQ7kz7rIZviUmN+EgEM=
gopkg.in/yaml.v3 v3.0.1 h1:fxVm/GzAzEWqLHuvctI91KS9hhNmmWOoWu0XTYJS7CA=
gopkg.in/yaml.v3 v3.0.1/go.mod h1:K4uyk7z7BCEPqu6E+C64Yfv1cQ7kz7rIZviUmN+EgEM=

401
internal/avro/avroCheckpoint.go Normal file
View File

@ -0,0 +1,401 @@
package avro
import (
"encoding/json"
"errors"
"fmt"
"log"
"os"
"path"
"sort"
"strconv"
"sync"
"sync/atomic"
"time"
"github.com/ClusterCockpit/cc-metric-store/internal/util"
"github.com/linkedin/goavro/v2"
)
var NumWorkers int = 4
var ErrNoNewData error = errors.New("no data in the pool")
func (as *AvroStore) ToCheckpoint(dir string) (int, error) {
levels := make([]*AvroLevel, 0)
selectors := make([][]string, 0)
as.root.lock.RLock()
// Cluster
for sel1, l1 := range as.root.children {
l1.lock.RLock()
// Node
for sel2, l2 := range l1.children {
l2.lock.RLock()
// Frequency
for sel3, l3 := range l1.children {
levels = append(levels, l3)
selectors = append(selectors, []string{sel1, sel2, sel3})
}
l2.lock.RUnlock()
}
l1.lock.RUnlock()
}
as.root.lock.RUnlock()
type workItem struct {
level *AvroLevel
dir string
selector []string
}
n, errs := int32(0), int32(0)
var wg sync.WaitGroup
wg.Add(NumWorkers)
work := make(chan workItem, NumWorkers*2)
for range NumWorkers {
go func() {
defer wg.Done()
for workItem := range work {
var from int64 = getTimestamp(workItem.dir)
if err := workItem.level.toCheckpoint(workItem.dir, from); err != nil {
if err == ErrNoNewData {
continue
}
log.Printf("error while checkpointing %#v: %s", workItem.selector, err.Error())
atomic.AddInt32(&errs, 1)
} else {
atomic.AddInt32(&n, 1)
}
}
}()
}
for i := range len(levels) {
dir := path.Join(dir, path.Join(selectors[i]...))
work <- workItem{
level: levels[i],
dir: dir,
selector: selectors[i],
}
}
close(work)
wg.Wait()
if errs > 0 {
return int(n), fmt.Errorf("%d errors happend while creating avro checkpoints (%d successes)", errs, n)
}
return int(n), nil
}
// getTimestamp returns the timestamp from the directory name
func getTimestamp(dir string) int64 {
// Extract the timestamp from the directory name
// The existing avro file will be in epoch timestamp format
// iterate over all the files in the directory and find the maximum timestamp
// and return it
files, err := os.ReadDir(dir)
if err != nil {
return 0
}
var maxTs int64 = 0
if len(files) == 0 {
return 0
}
for _, file := range files {
if file.IsDir() {
continue
}
name := file.Name()
if len(name) < 5 {
continue
}
ts, err := strconv.ParseInt(name[:len(name)-5], 10, 64)
if err != nil {
continue
}
if ts > maxTs {
maxTs = ts
}
}
return maxTs
}
func (l *AvroLevel) toCheckpoint(dir string, from int64) error {
fmt.Printf("Checkpointing directory: %s\n", dir)
// find smallest overall timestamp in l.data map and delete it from l.data
var minTs int64 = int64(1<<63 - 1)
for ts := range l.data {
if ts < minTs {
minTs = ts
}
}
if from == 0 {
from = minTs
}
var schema string
var codec *goavro.Codec
record_list := make([]map[string]interface{}, 0)
var f *os.File
filePath := path.Join(dir, fmt.Sprintf("%d.avro", from))
if _, err := os.Stat(filePath); errors.Is(err, os.ErrNotExist) {
err = os.MkdirAll(dir, 0o755)
if err == nil {
f, err = os.OpenFile(filePath, os.O_CREATE|os.O_WRONLY, 0o644)
if err != nil {
return fmt.Errorf("failed to create new avro file: %v", err)
}
}
} else {
f, err = os.Open(filePath)
if err != nil {
return fmt.Errorf("failed to open existing avro file: %v", err)
}
reader, err := goavro.NewOCFReader(f)
if err != nil {
return fmt.Errorf("failed to create OCF reader: %v", err)
}
schema = reader.Codec().Schema()
f.Close()
f, err = os.OpenFile(filePath, os.O_APPEND|os.O_RDWR, 0o644)
if err != nil {
log.Fatalf("Failed to create file: %v", err)
}
}
defer f.Close()
time_ref := time.Now().Add(time.Duration(-CheckpointBufferMinutes) * time.Minute).Unix()
for ts := range l.data {
if ts < time_ref {
schema_gen, err := generateSchema(l.data[ts])
if err != nil {
return err
}
flag, schema, err := compareSchema(schema, schema_gen)
if err != nil {
log.Fatalf("Failed to compare read and generated schema: %v", err)
}
if flag {
codec, err = goavro.NewCodec(schema)
if err != nil {
log.Fatalf("Failed to create codec after merged schema: %v", err)
}
f.Close()
f, err = os.Open(filePath)
if err != nil {
log.Fatalf("Failed to open Avro file: %v", err)
}
ocfReader, err := goavro.NewOCFReader(f)
if err != nil {
log.Fatalf("Failed to create OCF reader: %v", err)
}
for ocfReader.Scan() {
record, err := ocfReader.Read()
if err != nil {
log.Fatalf("Failed to read record: %v", err)
}
record_list = append(record_list, record.(map[string]interface{}))
}
f.Close()
err = os.Remove(filePath)
if err != nil {
log.Fatalf("Failed to delete file: %v", err)
}
f, err = os.OpenFile(filePath, os.O_CREATE|os.O_RDWR, 0o644)
if err != nil {
log.Fatalf("Failed to create file after deleting : %v", err)
}
}
record_list = append(record_list, generateRecord(l.data[ts]))
delete(l.data, minTs)
}
}
if len(record_list) == 0 {
return ErrNoNewData
}
writer, err := goavro.NewOCFWriter(goavro.OCFConfig{
W: f,
Codec: codec,
Schema: schema,
})
if err != nil {
log.Fatalf("Failed to create OCF writer: %v", err)
}
// Append the new record
if err := writer.Append(record_list); err != nil {
log.Fatalf("Failed to append record: %v", err)
}
return nil
}
func compareSchema(schemaRead, schemaGen string) (bool, string, error) {
var genSchema, readSchema AvroSchema
if schemaRead == "" {
return false, schemaGen, nil
}
// Unmarshal the schema strings into AvroSchema structs
if err := json.Unmarshal([]byte(schemaGen), &genSchema); err != nil {
return false, "", fmt.Errorf("failed to parse generated schema: %v", err)
}
if err := json.Unmarshal([]byte(schemaRead), &readSchema); err != nil {
return false, "", fmt.Errorf("failed to parse read schema: %v", err)
}
sort.Slice(genSchema.Fields, func(i, j int) bool {
return genSchema.Fields[i].Name < genSchema.Fields[j].Name
})
sort.Slice(readSchema.Fields, func(i, j int) bool {
return readSchema.Fields[i].Name < readSchema.Fields[j].Name
})
// Check if schemas are identical
schemasEqual := true
if len(genSchema.Fields) <= len(readSchema.Fields) {
for i := range genSchema.Fields {
if genSchema.Fields[i].Name != readSchema.Fields[i].Name {
schemasEqual = false
break
}
}
// If schemas are identical, return the read schema
if schemasEqual {
return false, schemaRead, nil
}
}
// Create a map to hold unique fields from both schemas
fieldMap := make(map[string]AvroField)
// Add fields from the read schema
for _, field := range readSchema.Fields {
fieldMap[field.Name] = field
}
// Add or update fields from the generated schema
for _, field := range genSchema.Fields {
fieldMap[field.Name] = field
}
// Create a union schema by collecting fields from the map
var mergedFields []AvroField
for _, field := range fieldMap {
mergedFields = append(mergedFields, field)
}
// Sort fields by name for consistency
sort.Slice(mergedFields, func(i, j int) bool {
return mergedFields[i].Name < mergedFields[j].Name
})
// Create the merged schema
mergedSchema := AvroSchema{
Type: "record",
Name: genSchema.Name,
Fields: mergedFields,
}
// Check if schemas are identical
schemasEqual = len(mergedSchema.Fields) == len(readSchema.Fields)
if schemasEqual {
for i := range mergedSchema.Fields {
if mergedSchema.Fields[i].Name != readSchema.Fields[i].Name {
schemasEqual = false
break
}
}
if schemasEqual {
return false, schemaRead, nil
}
}
// Marshal the merged schema back to JSON
mergedSchemaJson, err := json.Marshal(mergedSchema)
if err != nil {
return false, "", fmt.Errorf("failed to marshal merged schema: %v", err)
}
fmt.Printf("Merged Schema: %s\n", string(mergedSchemaJson))
fmt.Printf("Read Schema: %s\n", schemaRead)
return true, string(mergedSchemaJson), nil
}
func generateSchema(data map[string]util.Float) (string, error) {
// Define the Avro schema structure
schema := map[string]interface{}{
"type": "record",
"name": "DataRecord",
"fields": []map[string]interface{}{},
}
fieldTracker := make(map[string]struct{})
for key := range data {
if _, exists := fieldTracker[key]; !exists {
field := map[string]interface{}{
"name": key,
"type": "double", // Allows null or float
"default": 0.0,
}
schema["fields"] = append(schema["fields"].([]map[string]interface{}), field)
fieldTracker[key] = struct{}{}
}
}
schemaString, err := json.Marshal(schema)
if err != nil {
return "", fmt.Errorf("failed to marshal schema: %v", err)
}
return string(schemaString), nil
}
func generateRecord(data map[string]util.Float) map[string]interface{} {
record := make(map[string]interface{})
// Iterate through each map in data
for key, value := range data {
// Set the value in the record
record[key] = value
}
return record
}

14
internal/avro/avroHelper.go
View File

@ -34,6 +34,18 @@ func DataStaging(wg *sync.WaitGroup, ctx context.Context) {
continue
}
metricName := ""
for i, name := range val.Selector {
if i == 0 {
metricName += name
} else {
metricName += "_" + name
}
}
metricName += val.MetricName
// Create a new selector for the Avro level
// The selector is a slice of strings that represents the path to the
// Avro level. It is created by appending the cluster, node, and metric
@ -52,7 +64,7 @@ func DataStaging(wg *sync.WaitGroup, ctx context.Context) {
copy(oldSelector, selector)
}
avroLevel.addMetric(val.MetricName, val.Value, val.Timestamp)
avroLevel.addMetric(metricName, val.Value, val.Timestamp, int(freq))
}
}
}()

48
internal/avro/avroStruct.go
View File

@ -36,6 +36,18 @@ type AvroLevel struct {
lock sync.RWMutex
}
type AvroField struct {
Name string `json:"name"`
Type interface{} `json:"type"`
Default interface{} `json:"default,omitempty"`
}
type AvroSchema struct {
Type string `json:"type"`
Name string `json:"name"`
Fields []AvroField `json:"fields"`
}
func (l *AvroLevel) findAvroLevelOrCreate(selector []string) *AvroLevel {
if len(selector) == 0 {
return l
@ -82,28 +94,42 @@ func (l *AvroLevel) findAvroLevelOrCreate(selector []string) *AvroLevel {
return child.findAvroLevelOrCreate(selector[1:])
}
func (l *AvroLevel) addMetric(metricName string, value util.Float, timestamp int64) {
func (l *AvroLevel) addMetric(metricName string, value util.Float, timestamp int64, Freq int) {
l.lock.Lock()
defer l.lock.Unlock()
// Create a key value for the first time
KeyCounter := int(CheckpointBufferMinutes * 60 / Freq)
// Create keys in advance for the given amount of time
if len(l.data) != KeyCounter {
if len(l.data) == 0 {
l.data[timestamp] = make(map[string]util.Float, 0)
l.data[timestamp][metricName] = value
fmt.Printf("Creating new timestamp because no data exists\n")
for i := range KeyCounter {
l.data[timestamp+int64(i*Freq)] = make(map[string]util.Float, 0)
}
} else {
//Get the last timestamp
var lastTs int64
for ts := range l.data {
if ts > lastTs {
lastTs = ts
}
}
// Create keys for the next KeyCounter timestamps
l.data[lastTs+int64(Freq)] = make(map[string]util.Float, 0)
}
fmt.Printf("Creating timestamp keys to store key-value\n")
}
// Iterate over timestamps and choose the one which is within range.
// Since its epoch time, we check if the difference is less than 60 seconds.
for ts := range l.data {
if (ts - timestamp) < 60 {
if (ts - timestamp) < int64(Freq) {
l.data[ts][metricName] = value
return
}
}
// Create a new timestamp if none is found
l.data[timestamp] = make(map[string]util.Float, 0)
l.data[timestamp][metricName] = value
}
func GetAvroStore() *AvroStore {
return &avroStore
}

21
internal/memorystore/checkpoint.go
View File

@ -41,8 +41,9 @@ type CheckpointFile struct {
var lastCheckpoint time.Time
func Checkpointing(wg *sync.WaitGroup, ctx context.Context) {
if config.Keys.Checkpoints.FileFormat == "json" {
lastCheckpoint = time.Now()
if config.Keys.Checkpoints.FileFormat == "json" {
ms := GetMemoryStore()
go func() {
@ -82,11 +83,13 @@ func Checkpointing(wg *sync.WaitGroup, ctx context.Context) {
} else {
go func() {
defer wg.Done()
d, err := time.ParseDuration("1m")
d, _ := time.ParseDuration("1m")
d_cp, err := time.ParseDuration(config.Keys.Checkpoints.Interval)
if err != nil {
log.Fatal(err)
}
if d <= 0 {
if d_cp <= 0 {
return
}
@ -95,6 +98,7 @@ func Checkpointing(wg *sync.WaitGroup, ctx context.Context) {
return
case <-time.After(time.Duration(avro.CheckpointBufferMinutes) * time.Minute):
// This is the first tick untill we collect the data for given minutes.
avro.GetAvroStore().ToCheckpoint(config.Keys.Checkpoints.RootDir)
}
ticks := func() <-chan time.Time {
@ -103,12 +107,23 @@ func Checkpointing(wg *sync.WaitGroup, ctx context.Context) {
}
return time.NewTicker(d).C
}()
ticks_cp := func() <-chan time.Time {
if d_cp <= 0 {
return nil
}
return time.NewTicker(d_cp).C
}()
for {
select {
case <-ctx.Done():
return
case <-ticks_cp:
lastCheckpoint = time.Now()
case <-ticks:
// Regular ticks of 1 minute to write data.
avro.GetAvroStore().ToCheckpoint(config.Keys.Checkpoints.RootDir)
}
}
}()