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Beegfs collector (#50)

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* added beegfs collectors to collectors/README.md

* added beegfs collectors and docs

* added new beegfs collectors to AvailableCollectors list

* Feedback implemented

* changed error type

* changed error to only return

* changed beegfs lookup path

* fixed typo in md files

Co-authored-by: Mehmet Soysal <mehmet.soysal@kit.edu>
This commit is contained in:
Mehmet Soysal 2022-03-04 14:35:47 +01:00 committed by GitHub
parent 7f62975a68
commit 547bc0461f
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2
collectors/README.md
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@ -37,6 +37,8 @@ In contrast to the configuration files for sinks and receivers, the collectors c
* [`cpufreq_cpuinfo`](./cpufreqCpuinfoMetric.md)
* [`numastat`](./numastatMetric.md)
* [`gpfs`](./gpfsMetric.md)
* [`beegfs_meta`](./beegfsmetaMetric.md)
* [`beegfs_storage`](./beegfsstorageMetric.md)
## Todos

229
collectors/beegfsmetaMetric.go Normal file
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@ -0,0 +1,229 @@
package collectors
import (
"bufio"
"bytes"
"encoding/json"
"fmt"
"io/ioutil"
"os"
"os/exec"
"os/user"
"regexp"
"strconv"
"strings"
"time"
cclog "github.com/ClusterCockpit/cc-metric-collector/internal/ccLogger"
lp "github.com/ClusterCockpit/cc-metric-collector/internal/ccMetric"
)
const DEFAULT_BEEGFS_CMD = "beegfs-ctl"
// Struct for the collector-specific JSON config
type BeegfsMetaCollectorConfig struct {
Beegfs string `json:"beegfs_path"`
ExcludeMetrics []string `json:"exclude_metrics,omitempty"`
ExcludeFilesystem []string `json:"exclude_filesystem"`
}
type BeegfsMetaCollector struct {
metricCollector
tags map[string]string
matches map[string]string
config BeegfsMetaCollectorConfig
skipFS map[string]struct{}
}
func (m *BeegfsMetaCollector) Init(config json.RawMessage) error {
// Check if already initialized
if m.init {
return nil
}
// Metrics
var nodeMdstat_array = [39]string{
"sum", "ack", "close", "entInf",
"fndOwn", "mkdir", "create", "rddir",
"refrEn", "mdsInf", "rmdir", "rmLnk",
"mvDirIns", "mvFiIns", "open", "ren",
"sChDrct", "sAttr", "sDirPat", "stat",
"statfs", "trunc", "symlnk", "unlnk",
"lookLI", "statLI", "revalLI", "openLI",
"createLI", "hardlnk", "flckAp", "flckEn",
"flckRg", "dirparent", "listXA", "getXA",
"rmXA", "setXA", "mirror"}
m.name = "BeegfsMetaCollector"
m.setup()
// Set default beegfs-ctl binary
m.config.Beegfs = DEFAULT_BEEGFS_CMD
// Read JSON configuration
if len(config) > 0 {
err := json.Unmarshal(config, &m.config)
if err != nil {
return err
}
}
//create map with possible variables
m.matches = make(map[string]string)
for _, value := range nodeMdstat_array {
_, skip := stringArrayContains(m.config.ExcludeMetrics, value)
if skip {
m.matches["other"] = "0"
} else {
m.matches["beegfs_cmeta_"+value] = "0"
}
}
m.meta = map[string]string{
"source": m.name,
"group": "BeegfsMeta",
}
m.tags = map[string]string{
"type": "node",
"filesystem": "",
}
m.skipFS = make(map[string]struct{})
for _, fs := range m.config.ExcludeFilesystem {
m.skipFS[fs] = struct{}{}
}
// Beegfs file system statistics can only be queried by user root
user, err := user.Current()
if err != nil {
return fmt.Errorf("BeegfsMetaCollector.Init(): Failed to get current user: %v", err)
}
if user.Uid != "0" {
return fmt.Errorf("BeegfsMetaCollector.Init(): BeeGFS file system statistics can only be queried by user root")
}
// Check if beegfs-ctl is in executable search path
_, err = exec.LookPath(m.config.Beegfs)
if err != nil {
return fmt.Errorf("BeegfsMetaCollector.Init(): Failed to find beegfs-ctl binary '%s': %v", m.config.Beegfs, err)
}
m.init = true
return nil
}
func (m *BeegfsMetaCollector) Read(interval time.Duration, output chan lp.CCMetric) {
if !m.init {
return
}
//get mounpoint
buffer, _ := ioutil.ReadFile(string("/proc/mounts"))
mounts := strings.Split(string(buffer), "\n")
var mountpoints []string
for _, line := range mounts {
if len(line) == 0 {
continue
}
f := strings.Fields(line)
if strings.Contains(f[0], "beegfs_ondemand") {
// Skip excluded filesystems
if _, skip := m.skipFS[f[1]]; skip {
continue
}
mountpoints = append(mountpoints, f[1])
}
}
if len(mountpoints) == 0 {
return
}
for _, mountpoint := range mountpoints {
m.tags["filesystem"] = mountpoint
// bwwgfs-ctl:
// --clientstats: Show client IO statistics.
// --nodetype=meta: The node type to query (meta, storage).
// --interval:
// --mount=/mnt/beeond/: Which mount point
//cmd := exec.Command(m.config.Beegfs, "/root/mc/test.txt")
mountoption := "--mount=" + mountpoint
cmd := exec.Command(m.config.Beegfs, "--clientstats",
"--nodetype=meta", mountoption, "--allstats")
cmd.Stdin = strings.NewReader("\n")
cmdStdout := new(bytes.Buffer)
cmdStderr := new(bytes.Buffer)
cmd.Stdout = cmdStdout
cmd.Stderr = cmdStderr
err := cmd.Run()
if err != nil {
fmt.Fprintf(os.Stderr, "BeegfsMetaCollector.Read(): Failed to execute command \"%s\": %s\n", cmd.String(), err.Error())
fmt.Fprintf(os.Stderr, "BeegfsMetaCollector.Read(): command exit code: \"%d\"\n", cmd.ProcessState.ExitCode())
data, _ := ioutil.ReadAll(cmdStderr)
fmt.Fprintf(os.Stderr, "BeegfsMetaCollector.Read(): command stderr: \"%s\"\n", string(data))
data, _ = ioutil.ReadAll(cmdStdout)
fmt.Fprintf(os.Stderr, "BeegfsMetaCollector.Read(): command stdout: \"%s\"\n", string(data))
return
}
// Read I/O statistics
scanner := bufio.NewScanner(cmdStdout)
sumLine := regexp.MustCompile(`^Sum:\s+\d+\s+\[[a-zA-Z]+\]+`)
//Line := regexp.MustCompile(`^(.*)\s+(\d)+\s+\[([a-zA-Z]+)\]+`)
statsLine := regexp.MustCompile(`^(.*?)\s+?(\d.*?)$`)
singleSpacePattern := regexp.MustCompile(`\s+`)
removePattern := regexp.MustCompile(`[\[|\]]`)
for scanner.Scan() {
readLine := scanner.Text()
//fmt.Println(readLine)
// Jump few lines, we only want the I/O stats from nodes
if !sumLine.MatchString(readLine) {
continue
}
match := statsLine.FindStringSubmatch(readLine)
// nodeName = "Sum:" or would be nodes
// nodeName := match[1]
//Remove multiple whitespaces
dummy := removePattern.ReplaceAllString(match[2], " ")
metaStats := strings.TrimSpace(singleSpacePattern.ReplaceAllString(dummy, " "))
split := strings.Split(metaStats, " ")
// fill map with values
// split[i+1] = mdname
// split[i] = amount of md operations
for i := 0; i <= len(split)-1; i += 2 {
if _, ok := m.matches[split[i+1]]; ok {
m.matches["beegfs_cmeta_"+split[i+1]] = split[i]
} else {
f1, err := strconv.ParseFloat(m.matches["other"], 32)
if err != nil {
cclog.ComponentError(
m.name,
fmt.Sprintf("Metric (other): Failed to convert str written '%s' to float: %v", m.matches["other"], err))
continue
}
f2, err := strconv.ParseFloat(split[i], 32)
if err != nil {
cclog.ComponentError(
m.name,
fmt.Sprintf("Metric (other): Failed to convert str written '%s' to float: %v", m.matches["other"], err))
continue
}
//mdStat["other"] = fmt.Sprintf("%f", f1+f2)
m.matches["beegfs_cstorage_other"] = fmt.Sprintf("%f", f1+f2)
}
}
for key, data := range m.matches {
value, _ := strconv.ParseFloat(data, 32)
y, err := lp.New(key, m.tags, m.meta, map[string]interface{}{"value": value}, time.Now())
if err == nil {
output <- y
}
}
}
}
}
func (m *BeegfsMetaCollector) Close() {
m.init = false
}

75
collectors/beegfsmetaMetric.md Normal file
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@ -0,0 +1,75 @@
## `BeeGFS on Demand` collector
This Collector is to collect BeeGFS on Demand (BeeOND) metadata clientstats.
```json
"beegfs_meta": {
"beegfs_path": "/usr/bin/beegfs-ctl",
"exclude_filesystem": [
"/mnt/ignore_me"
],
"exclude_metrics": [
"ack",
"entInf",
"fndOwn"
]
}
```
The `BeeGFS On Demand (BeeOND)` collector uses the `beegfs-ctl` command to read performance metrics for
BeeGFS filesystems.
The reported filesystems can be filtered with the `exclude_filesystem` option
in the configuration.
The path to the `beegfs-ctl` command can be configured with the `beegfs_path` option
in the configuration.
When using the `exclude_metrics` option, the excluded metrics are summed as `other`.
Important: The metrics listed below, are similar to the naming of BeeGFS. The Collector prefixes these with `beegfs_cstorage`(beegfs client storage).
For example beegfs metric `open`-> `beegfs_cstorage_open`
Available Metrics:
* sum
* ack
* close
* entInf
* fndOwn
* mkdir
* create
* rddir
* refrEnt
* mdsInf
* rmdir
* rmLnk
* mvDirIns
* mvFiIns
* open
* ren
* sChDrct
* sAttr
* sDirPat
* stat
* statfs
* trunc
* symlnk
* unlnk
* lookLI
* statLI
* revalLI
* openLI
* createLI
* hardlnk
* flckAp
* flckEn
* flckRg
* dirparent
* listXA
* getXA
* rmXA
* setXA
* mirror
The collector adds a `filesystem` tag to all metrics

221
collectors/beegfsstorageMetric.go Normal file
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@ -0,0 +1,221 @@
package collectors
import (
"bufio"
"bytes"
"encoding/json"
"fmt"
"io/ioutil"
"os"
"os/exec"
"os/user"
"regexp"
"strconv"
"strings"
"time"
cclog "github.com/ClusterCockpit/cc-metric-collector/internal/ccLogger"
lp "github.com/ClusterCockpit/cc-metric-collector/internal/ccMetric"
)
// Struct for the collector-specific JSON config
type BeegfsStorageCollectorConfig struct {
Beegfs string `json:"beegfs_path"`
ExcludeMetrics []string `json:"exclude_metrics,omitempty"`
ExcludeFilesystem []string `json:"exclude_filesystem"`
}
type BeegfsStorageCollector struct {
metricCollector
tags map[string]string
matches map[string]string
config BeegfsStorageCollectorConfig
skipFS map[string]struct{}
}
func (m *BeegfsStorageCollector) Init(config json.RawMessage) error {
// Check if already initialized
if m.init {
return nil
}
// Metrics
var storageStat_array = [18]string{
"sum", "ack", "sChDrct", "getFSize",
"sAttr", "statfs", "trunc", "close",
"fsync", "ops-rd", "MiB-rd/s", "ops-wr",
"MiB-wr/s", "gendbg", "hrtbeat", "remNode",
"storInf", "unlnk"}
m.name = "BeegfsStorageCollector"
m.setup()
// Set default beegfs-ctl binary
m.config.Beegfs = DEFAULT_BEEGFS_CMD
// Read JSON configuration
if len(config) > 0 {
err := json.Unmarshal(config, &m.config)
if err != nil {
return err
}
}
println(m.config.Beegfs)
//create map with possible variables
m.matches = make(map[string]string)
for _, value := range storageStat_array {
_, skip := stringArrayContains(m.config.ExcludeMetrics, value)
if skip {
m.matches["other"] = "0"
} else {
m.matches["beegfs_cstorage_"+value] = "0"
}
}
m.meta = map[string]string{
"source": m.name,
"group": "BeegfsStorage",
}
m.tags = map[string]string{
"type": "node",
"filesystem": "",
}
m.skipFS = make(map[string]struct{})
for _, fs := range m.config.ExcludeFilesystem {
m.skipFS[fs] = struct{}{}
}
// Beegfs file system statistics can only be queried by user root
user, err := user.Current()
if err != nil {
return fmt.Errorf("BeegfsStorageCollector.Init(): Failed to get current user: %v", err)
}
if user.Uid != "0" {
return fmt.Errorf("BeegfsStorageCollector.Init(): BeeGFS file system statistics can only be queried by user root")
}
// Check if beegfs-ctl is in executable search path
_, err = exec.LookPath(m.config.Beegfs)
if err != nil {
return fmt.Errorf("BeegfsStorageCollector.Init(): Failed to find beegfs-ctl binary '%s': %v", m.config.Beegfs, err)
}
m.init = true
return nil
}
func (m *BeegfsStorageCollector) Read(interval time.Duration, output chan lp.CCMetric) {
if !m.init {
return
}
//get mounpoint
buffer, _ := ioutil.ReadFile(string("/proc/mounts"))
mounts := strings.Split(string(buffer), "\n")
var mountpoints []string
for _, line := range mounts {
if len(line) == 0 {
continue
}
f := strings.Fields(line)
if strings.Contains(f[0], "beegfs_ondemand") {
// Skip excluded filesystems
if _, skip := m.skipFS[f[1]]; skip {
continue
}
mountpoints = append(mountpoints, f[1])
}
}
if len(mountpoints) == 0 {
return
}
// collects stats for each BeeGFS on Demand FS
for _, mountpoint := range mountpoints {
m.tags["filesystem"] = mountpoint
// bwwgfs-ctl:
// --clientstats: Show client IO statistics.
// --nodetype=meta: The node type to query (meta, storage).
// --interval:
// --mount=/mnt/beeond/: Which mount point
//cmd := exec.Command(m.config.Beegfs, "/root/mc/test.txt")
mountoption := "--mount=" + mountpoint
cmd := exec.Command(m.config.Beegfs, "--clientstats",
"--nodetype=storage", mountoption, "--allstats")
cmd.Stdin = strings.NewReader("\n")
cmdStdout := new(bytes.Buffer)
cmdStderr := new(bytes.Buffer)
cmd.Stdout = cmdStdout
cmd.Stderr = cmdStderr
err := cmd.Run()
if err != nil {
fmt.Fprintf(os.Stderr, "BeegfsStorageCollector.Read(): Failed to execute command \"%s\": %s\n", cmd.String(), err.Error())
fmt.Fprintf(os.Stderr, "BeegfsStorageCollector.Read(): command exit code: \"%d\"\n", cmd.ProcessState.ExitCode())
data, _ := ioutil.ReadAll(cmdStderr)
fmt.Fprintf(os.Stderr, "BeegfsStorageCollector.Read(): command stderr: \"%s\"\n", string(data))
data, _ = ioutil.ReadAll(cmdStdout)
fmt.Fprintf(os.Stderr, "BeegfsStorageCollector.Read(): command stdout: \"%s\"\n", string(data))
return
}
// Read I/O statistics
scanner := bufio.NewScanner(cmdStdout)
sumLine := regexp.MustCompile(`^Sum:\s+\d+\s+\[[a-zA-Z]+\]+`)
//Line := regexp.MustCompile(`^(.*)\s+(\d)+\s+\[([a-zA-Z]+)\]+`)
statsLine := regexp.MustCompile(`^(.*?)\s+?(\d.*?)$`)
singleSpacePattern := regexp.MustCompile(`\s+`)
removePattern := regexp.MustCompile(`[\[|\]]`)
for scanner.Scan() {
readLine := scanner.Text()
//fmt.Println(readLine)
// Jump few lines, we only want the I/O stats from nodes
if !sumLine.MatchString(readLine) {
continue
}
match := statsLine.FindStringSubmatch(readLine)
// nodeName = "Sum:" or would be nodes
// nodeName := match[1]
//Remove multiple whitespaces
dummy := removePattern.ReplaceAllString(match[2], " ")
metaStats := strings.TrimSpace(singleSpacePattern.ReplaceAllString(dummy, " "))
split := strings.Split(metaStats, " ")
// fill map with values
// split[i+1] = mdname
// split[i] = amount of operations
for i := 0; i <= len(split)-1; i += 2 {
if _, ok := m.matches[split[i+1]]; ok {
m.matches["beegfs_cstorage_"+split[i+1]] = split[i]
//m.matches[split[i+1]] = split[i]
} else {
f1, err := strconv.ParseFloat(m.matches["other"], 32)
if err != nil {
cclog.ComponentError(
m.name,
fmt.Sprintf("Metric (other): Failed to convert str written '%s' to float: %v", m.matches["other"], err))
continue
}
f2, err := strconv.ParseFloat(split[i], 32)
if err != nil {
cclog.ComponentError(
m.name,
fmt.Sprintf("Metric (other): Failed to convert str written '%s' to float: %v", m.matches["other"], err))
continue
}
m.matches["beegfs_cstorage_other"] = fmt.Sprintf("%f", f1+f2)
}
}
for key, data := range m.matches {
value, _ := strconv.ParseFloat(data, 32)
y, err := lp.New(key, m.tags, m.meta, map[string]interface{}{"value": value}, time.Now())
if err == nil {
output <- y
}
}
}
}
}
func (m *BeegfsStorageCollector) Close() {
m.init = false
}

55
collectors/beegfsstorageMetric.md Normal file
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@ -0,0 +1,55 @@
## `BeeGFS on Demand` collector
This Collector is to collect BeeGFS on Demand (BeeOND) storage stats.
```json
"beegfs_storage": {
"beegfs_path": "/usr/bin/beegfs-ctl",
"exclude_filesystem": [
"/mnt/ignore_me"
],
"exclude_metrics": [
"ack",
"storInf",
"unlnk"
]
}
```
The `BeeGFS On Demand (BeeOND)` collector uses the `beegfs-ctl` command to read performance metrics for BeeGFS filesystems.
The reported filesystems can be filtered with the `exclude_filesystem` option
in the configuration.
The path to the `beegfs-ctl` command can be configured with the `beegfs_path` option
in the configuration.
When using the `exclude_metrics` option, the excluded metrics are summed as `other`.
Important: The metrics listed below, are similar to the naming of BeeGFS. The Collector prefixes these with `beegfs_cstorage_`(beegfs client meta).
For example beegfs metric `open`-> `beegfs_cstorage_`
Note: BeeGFS FS offers many Metadata Information. Probably it makes sense to exlcude most of them. Nevertheless, these excluded metrics will be summed as `beegfs_cstorage_other`.
Available Metrics:
* "sum"
* "ack"
* "sChDrct"
* "getFSize"
* "sAttr"
* "statfs"
* "trunc"
* "close"
* "fsync"
* "ops-rd"
* "MiB-rd/s"
* "ops-wr"
* "MiB-wr/s"
* "endbg"
* "hrtbeat"
* "remNode"
* "storInf"
* "unlnk"
The collector adds a `filesystem` tag to all metrics

2
collectors/collectorManager.go
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@ -34,6 +34,8 @@ var AvailableCollectors = map[string]MetricCollector{
"nfs3stat": new(Nfs3Collector),
"nfs4stat": new(Nfs4Collector),
"numastats": new(NUMAStatsCollector),
"beegfs_meta": new(BeegfsMetaCollector),
"beegfs_storage": new(BeegfsStorageCollector),
}
// Metric collector manager data structure