Stable services

docker-compose.yml

@@ -68,8 +68,6 @@ services:
     hostname: slurmctld
     build:
       context: ./slurm/controller
-    depends_on:
-      - slurmdbd
     privileged: true
     ports:
       - "6817:6817"
@@ -77,6 +75,8 @@ services:
       - ${DATADIR}/slurm/home:/home
       - ${DATADIR}/slurm/secret:/.secret
       - ./slurm/controller/slurm.conf:/home/config/slurm.conf
+      - /etc/timezone:/etc/timezone:ro
+      - /etc/localtime:/etc/localtime:ro
 
   slurmdbd:
     container_name: slurmdbd
@@ -85,6 +85,7 @@ services:
       context: ./slurm/database
     depends_on:
       - mariadb
+      - slurmctld
     privileged: true
     ports:
       - "6819:6819"
@@ -92,6 +93,8 @@ services:
       - ${DATADIR}/slurm/home:/home
       - ${DATADIR}/slurm/secret:/.secret
       - ./slurm/database/slurmdbd.conf:/home/config/slurmdbd.conf
+      - /etc/timezone:/etc/timezone:ro
+      - /etc/localtime:/etc/localtime:ro
 
   node01:
     container_name: node01
@@ -106,17 +109,7 @@ services:
       - ${DATADIR}/slurm/secret:/.secret
       - ./slurm/worker/cgroup.conf:/home/config/cgroup.conf
       - ./slurm/controller/slurm.conf:/home/config/slurm.conf
+      - /etc/timezone:/etc/timezone:ro
+      - /etc/localtime:/etc/localtime:ro
     ports:
-      - "6818:6818"
+      - "6818:6818"
-
-  # slurm-worker02:
-  #   container_name: node02
-    # hostname: node02
-  #   build:
-  #     context: ./slurm/worker
-  #   depends_on:
-  #     - slurm-controller
-  #   privileged: true
-  #   volumes:
-      # - ${DATADIR}/slurm/home:/home
-      # - ${DATADIR}/slurm/secret:/.secret

slurm/controller/docker-entrypoint.sh

@@ -4,6 +4,18 @@ set -e
 # Determine the system architecture dynamically
 ARCH=$(uname -m)
 
+_delete_secrets() {
+    if [ -f /.secret/munge.key ]; then
+        echo "Removing secrets"
+        sudo rm -rf /.secret/munge.key
+        sudo rm -rf /.secret/worker-secret.tar.gz
+        sudo rm -rf /.secret/setup-worker-ssh.sh
+
+        echo "Done removing secrets"
+        ls /.secret/
+    fi
+}
+
 # start sshd server
 _sshd_host() {
     if [ ! -d /var/run/sshd ]; then
@@ -90,9 +102,17 @@ _slurmctld() {
     done
     echo ""
     mkdir -p /var/spool/slurm/ctld /var/spool/slurm/d /var/log/slurm /etc/slurm
-    chown -R slurm: /var/spool/slurm/ctld /var/spool/slurm/d /var/log/slurm
+    chown -R slurm: /var/spool/slurm/ctld /var/spool/slurm/d /var/log/slurm /var/spool /var/lib
     touch /var/log/slurmctld.log
     chown slurm: /var/log/slurmctld.log
+    touch /var/log/slurmd.log
+    chown slurm: /var/log/slurmd.log
+
+    # touch /var/run/slurm/d/slurmctld.pid
+    # chown slurm: /var/run/slurm/d/slurmctld.pid
+    # touch /var/run/slurm/d/slurmd.pid
+    # chown slurm:/var/run/slurm/d/slurmd.pid
+
     if [[ ! -f /home/config/slurm.conf ]]; then
         echo "### Missing slurm.conf ###"
         exit
@@ -103,15 +123,25 @@ _slurmctld() {
         chmod 600 /etc/slurm/slurm.conf
     fi
 
-    sacctmgr -i add cluster "snowflake"
+    sudo yum install -y nc
+    sudo yum install -y procps
+    sudo yum install -y iputils
+
+    while ! nc -z slurmdbd 6819; do
+        echo "Waiting for slurmdbd to be ready..."
+        sleep 2
+    done
+
+    sacctmgr -i add cluster name=linux
     sleep 2s
     echo "Starting slurmctld"
     cp -f /etc/slurm/slurm.conf /.secret/
-    /usr/sbin/slurmctld
+    /usr/sbin/slurmctld -Dvv
     echo "Started slurmctld"
 }
 
 ### main ###
+_delete_secrets
 _sshd_host
 _ssh_worker
 _munge_start

slurm/controller/slurm.conf

@@ -15,13 +15,13 @@ SlurmdPort=6818
 AuthType=auth/munge
 #JobCredentialPrivateKey=
 #JobCredentialPublicCertificate=
-StateSaveLocation=/var/lib/slurmd
+StateSaveLocation=/var/lib/slurm/d
-SlurmdSpoolDir=/var/spool/slurmd
+SlurmdSpoolDir=/var/spool/slurm/d
 SwitchType=switch/none
 MpiDefault=none
-SlurmctldPidFile=/var/run/slurmd/slurmctld.pid
+SlurmctldPidFile=/var/run/slurm/d/slurmctld.pid
-SlurmdPidFile=/var/run/slurmd/slurmd.pid
+SlurmdPidFile=/var/run/slurm/d/slurmd.pid
-# ProctrackType=proctrack/linuxproc
+ProctrackType=proctrack/linuxproc
 #PluginDir=
 #CacheGroups=0
 #FirstJobId=
@@ -79,7 +79,7 @@ JobCompLoc=/var/log/slurm/jobcomp.log
 # ACCOUNTING
 #JobAcctGatherType=jobacct_gather/linux
 JobAcctGatherType=jobacct_gather/cgroup
-ProctrackType=proctrack/cgroup
+# ProctrackType=proctrack/cgroup
 
 JobAcctGatherFrequency=30
 #
@@ -97,7 +97,7 @@ PartitionName=debug Nodes=c[1-2] Default=YES MaxTime=INFINITE State=UP
 
 # # COMPUTE NODES
 # NodeName=c[1-2] RealMemory=1000 State=UNKNOWN
-NodeName=c[1-2] CPUs=12 Boards=1 SocketsPerBoard=2 CoresPerSocket=3 ThreadsPerCore=2
+NodeName=node01 CPUs=2 Boards=1 SocketsPerBoard=2 CoresPerSocket=1 ThreadsPerCore=1
 
 # #
 # # PARTITIONS

slurm/worker/docker-entrypoint.sh

@@ -15,6 +15,10 @@ _sshd_host() {
 
 # start munge using existing key
 _munge_start_using_key() {
+  sudo yum install -y nc
+  sudo yum install -y procps
+  sudo yum install -y iputils
+
   echo -n "cheking for munge.key"
   while [ ! -f /.secret/munge.key ]; do
     echo -n "."
@@ -35,50 +39,58 @@ _munge_start_using_key() {
 
 # wait for worker user in shared /home volume
 _wait_for_worker() {
+  echo "checking for id_rsa.pub"
   if [ ! -f /home/worker/.ssh/id_rsa.pub ]; then
-    echo -n "checking for id_rsa.pub"
+    echo "checking for id_rsa.pub"
     while [ ! -f /home/worker/.ssh/id_rsa.pub ]; do
       echo -n "."
       sleep 1
     done
     echo ""
   fi
+  echo "done checking for id_rsa.pub"
+
 }
 
 _start_dbus() {
-    dbus-uuidgen > /var/lib/dbus/machine-id
+  dbus-uuidgen >/var/lib/dbus/machine-id
-    mkdir -p /var/run/dbus
+  mkdir -p /var/run/dbus
-    dbus-daemon --config-file=/usr/share/dbus-1/system.conf --print-address
+  dbus-daemon --config-file=/usr/share/dbus-1/system.conf --print-address
 }
 
 # run slurmd
 _slurmd() {
-    cd /root/rpmbuild/RPMS/$ARCH
+  cd /root/rpmbuild/RPMS/$ARCH
-    yum -y --nogpgcheck localinstall slurm-22.05.6-1.el8.$ARCH.rpm \
+  yum -y --nogpgcheck localinstall slurm-22.05.6-1.el8.$ARCH.rpm \
-        slurm-perlapi-22.05.6-1.el8.$ARCH.rpm \
+    slurm-perlapi-22.05.6-1.el8.$ARCH.rpm \
-        slurm-slurmd-22.05.6-1.el8.$ARCH.rpm \
+    slurm-slurmd-22.05.6-1.el8.$ARCH.rpm \
-        slurm-torque-22.05.6-1.el8.$ARCH.rpm
+    slurm-torque-22.05.6-1.el8.$ARCH.rpm
-    if [ ! -f /.secret/slurm.conf ]; then
+
-        echo -n "checking for slurm.conf"
+  echo "checking for slurm.conf"
-        while [ ! -f /.secret/slurm.conf ]; do
+  if [ ! -f /.secret/slurm.conf ]; then
-          echo -n "."
+    echo "checking for slurm.conf"
-          sleep 1
+    while [ ! -f /.secret/slurm.conf ]; do
-        done
+      echo -n "."
-        echo ""
+      sleep 1
-    fi
+    done
-    mkdir -p /var/spool/slurm/d /etc/slurm
+    echo ""
-    chown slurm: /var/spool/slurm/d
+  fi
-    cp /home/config/cgroup.conf /etc/slurm/cgroup.conf
+  echo "found slurm.conf"
-    chown slurm: /etc/slurm/cgroup.conf
+
-    chmod 600 /etc/slurm/cgroup.conf
+  mkdir -p /var/spool/slurm/d /etc/slurm
-    cp /home/config/slurm.conf /etc/slurm/slurm.conf
+  chown slurm: /var/spool/slurm/d
-    chown slurm: /etc/slurm/slurm.conf
+  cp /home/config/cgroup.conf /etc/slurm/cgroup.conf
-    chmod 600 /etc/slurm/slurm.conf
+  chown slurm: /etc/slurm/cgroup.conf
-    touch /var/log/slurmd.log
+  chmod 600 /etc/slurm/cgroup.conf
-    chown slurm: /var/log/slurmd.log
+  cp /home/config/slurm.conf /etc/slurm/slurm.conf
-    echo -n "Starting slurmd"
+  chown slurm: /etc/slurm/slurm.conf
-    /usr/sbin/slurmd
+  chmod 600 /etc/slurm/slurm.conf
-    echo -n "Started slurmd"
+  touch /var/log/slurmd.log
+  chown slurm: /var/log/slurmd.log
+
+  echo "Starting slurmd"
+  /usr/sbin/slurmd -Dvv
+  echo "Started slurmd"
 }
 
 ### main ###