mirror of
https://github.com/ClusterCockpit/cc-docker.git
synced 2025-03-14 19:05:56 +01:00
Initial commit
This commit is contained in:
Aditya Ujeniya
parent
cf7ddde758
commit
523a688bed
@ -1,10 +1,11 @@
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FROM golang:1.17
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FROM golang:1.22.4
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RUN apt-get update
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RUN apt-get -y install git
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RUN git clone https://github.com/ClusterCockpit/cc-metric-store.git /cc-metric-store
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RUN cd /cc-metric-store && go build
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RUN ls
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RUN cd /cc-metric-store && go build ./cmd/cc-metric-store
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# Reactivate when latest commit is available
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#RUN go get -d -v github.com/ClusterCockpit/cc-metric-store
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34
data/init.sh
34
data/init.sh
@ -1,34 +0,0 @@
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#!/usr/bin/env bash
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if [ -d symfony ]; then
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echo "Data already initialized!"
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echo -n "Perform a fresh initialisation? [yes to proceed / no to exit] "
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read -r answer
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if [ "$answer" == "yes" ]; then
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echo "Cleaning directories ..."
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rm -rf symfony
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rm -rf job-archive
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rm -rf influxdb/data/*
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rm -rf sqldata/*
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echo "done."
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else
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echo "Aborting ..."
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exit
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fi
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fi
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mkdir symfony
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wget https://hpc-mover.rrze.uni-erlangen.de/HPC-Data/0x7b58aefb/eig7ahyo6fo2bais0ephuf2aitohv1ai/job-archive_stable.tar.xz
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tar xJf job-archive_stable.tar.xz
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rm ./job-archive_stable.tar.xz
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# 101 is the uid and gid of the user and group www-data in the cc-php container running php-fpm.
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# For a demo with no new jobs it is enough to give www read permissions on that directory.
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# echo "This script needs to chown the job-archive directory so that the application can write to it:"
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# sudo chown -R 82:82 ./job-archive
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mkdir -p influxdb/data
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wget https://hpc-mover.rrze.uni-erlangen.de/HPC-Data/0x7b58aefb/eig7ahyo6fo2bais0ephuf2aitohv1ai/influxdbv2-data_stable.tar.xz
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cd influxdb/data
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tar xJf ../../influxdbv2-data_stable.tar.xz
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rm ../../influxdbv2-data_stable.tar.xz
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1027
data/ldap/users.ldif
1027
data/ldap/users.ldif
File diff suppressed because it is too large
Load Diff
@ -1,5 +0,0 @@
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[mysqld]
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innodb_buffer_pool_size=4096M
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innodb_log_file_size=64M
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innodb_lock_wait_timeout=900
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max_allowed_packet=16M
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@ -1,4 +0,0 @@
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ConstrainCores=yes
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ConstrainDevices=no
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ConstrainRAMSpace=yes
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ConstrainSwapSpace=yes
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@ -1,48 +0,0 @@
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# slurm.conf file generated by configurator.html.
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# Put this file on all nodes of your cluster.
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# See the slurm.conf man page for more information.
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#
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ClusterName=snowflake
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SlurmctldHost=slurmctld
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SlurmUser=slurm
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SlurmctldPort=6817
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SlurmdPort=6818
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MpiDefault=none
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ProctrackType=proctrack/linuxproc
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ReturnToService=1
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SlurmctldPidFile=/var/run/slurmctld.pid
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SlurmdPidFile=/var/run/slurmd.pid
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SlurmdSpoolDir=/var/spool/slurm/d
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StateSaveLocation=/var/spool/slurm/ctld
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SwitchType=switch/none
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TaskPlugin=task/affinity
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#
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# TIMERS
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InactiveLimit=0
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KillWait=30
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MinJobAge=300
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SlurmctldTimeout=120
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SlurmdTimeout=300
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Waittime=0
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#
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# SCHEDULING
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SchedulerType=sched/backfill
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SelectType=select/cons_tres
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#
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# LOGGING AND ACCOUNTING
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AccountingStorageHost=slurmdb
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AccountingStoragePort=6819
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AccountingStorageType=accounting_storage/slurmdbd
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AccountingStorageUser=slurm
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AccountingStoreFlags=job_script,job_comment,job_env,job_extra
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JobCompType=jobcomp/none
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JobAcctGatherFrequency=30
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JobAcctGatherType=jobacct_gather/linux
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SlurmctldDebug=info
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SlurmctldLogFile=/var/log/slurmctld.log
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SlurmdDebug=info
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SlurmdLogFile=/var/log/slurmd.log
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#
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# COMPUTE NODES
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NodeName=node0[1-2] CPUs=1 State=UNKNOWN
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PartitionName=main Nodes=ALL Default=YES MaxTime=INFINITE State=UP
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@ -1,31 +0,0 @@
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# Archive info
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#ArchiveJobs=yes
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#ArchiveDir="/tmp"
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#ArchiveSteps=yes
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#ArchiveScript=
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#JobPurge=12
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#StepPurge=1
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#
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# Authentication info
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AuthType=auth/munge
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AuthInfo=/var/run/munge/munge.socket.2
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#
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# slurmDBD info
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DbdAddr=slurmdb
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DbdHost=slurmdb
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DbdPort=6819
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SlurmUser=slurm
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DebugLevel=4
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LogFile=/var/log/slurm/slurmdbd.log
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PidFile=/var/run/slurmdbd.pid
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#PluginDir=/usr/lib/slurm
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#PrivateData=accounts,users,usage,jobs
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#TrackWCKey=yes
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#
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# Database info
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StorageType=accounting_storage/mysql
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StorageHost=mariadb
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StoragePort=3306
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StoragePass=demo
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StorageUser=slurm
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StorageLoc=slurm_acct_db
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@ -81,6 +81,7 @@ services:
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# - SYS_NICE
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slurm-controller:
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image: cc-docker:22.05
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container_name: slurmctld
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hostname: slurmctld
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build:
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@ -9,7 +9,6 @@ use File::Slurp;
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use Data::Dumper;
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use Time::Piece;
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use Sort::Versions;
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use REST::Client;
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### JOB-ARCHIVE
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my $localtime = localtime;
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@ -19,80 +18,80 @@ my $archiveSrc = './data/job-archive-source';
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my @ArchiveClusters;
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# Get clusters by job-archive/$subfolder
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opendir my $dh, $archiveSrc or die "can't open directory: $!";
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while ( readdir $dh ) {
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chomp; next if $_ eq '.' or $_ eq '..' or $_ eq 'job-archive';
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# opendir my $dh, $archiveSrc or die "can't open directory: $!";
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# while ( readdir $dh ) {
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# chomp; next if $_ eq '.' or $_ eq '..' or $_ eq 'job-archive' or $_ eq 'version.txt';
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my $cluster = $_;
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push @ArchiveClusters, $cluster;
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}
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# my $cluster = $_;
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# push @ArchiveClusters, $cluster;
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# }
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# start for jobarchive
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foreach my $cluster ( @ArchiveClusters ) {
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print "Starting to update start- and stoptimes in job-archive for $cluster\n";
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# # start for jobarchive
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# foreach my $cluster ( @ArchiveClusters ) {
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# print "Starting to update start- and stoptimes in job-archive for $cluster\n";
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opendir my $dhLevel1, "$archiveSrc/$cluster" or die "can't open directory: $!";
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while ( readdir $dhLevel1 ) {
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chomp; next if $_ eq '.' or $_ eq '..';
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my $level1 = $_;
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# opendir my $dhLevel1, "$archiveSrc/$cluster" or die "can't open directory: $!";
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# while ( readdir $dhLevel1 ) {
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# chomp; next if $_ eq '.' or $_ eq '..';
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# my $level1 = $_;
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if ( -d "$archiveSrc/$cluster/$level1" ) {
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opendir my $dhLevel2, "$archiveSrc/$cluster/$level1" or die "can't open directory: $!";
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while ( readdir $dhLevel2 ) {
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chomp; next if $_ eq '.' or $_ eq '..';
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my $level2 = $_;
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my $jobSource = "$archiveSrc/$cluster/$level1/$level2";
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my $jobTarget = "$archiveTarget/$cluster/$level1/$level2/";
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my $jobOrigin = $jobSource;
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# check if files are directly accessible (old format) else get subfolders as file and update path
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if ( ! -e "$jobSource/meta.json") {
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my @folders = read_dir($jobSource);
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if (!@folders) {
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next;
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}
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# Only use first subfolder for now TODO
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$jobSource = "$jobSource/".$folders[0];
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}
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# check if subfolder contains file, else remove source and skip
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if ( ! -e "$jobSource/meta.json") {
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# rmtree $jobOrigin;
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next;
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}
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# if ( -d "$archiveSrc/$cluster/$level1" ) {
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# opendir my $dhLevel2, "$archiveSrc/$cluster/$level1" or die "can't open directory: $!";
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# while ( readdir $dhLevel2 ) {
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# chomp; next if $_ eq '.' or $_ eq '..';
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# my $level2 = $_;
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# my $jobSource = "$archiveSrc/$cluster/$level1/$level2";
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# my $jobTarget = "$archiveTarget/$cluster/$level1/$level2/";
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# my $jobOrigin = $jobSource;
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# # check if files are directly accessible (old format) else get subfolders as file and update path
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# if ( ! -e "$jobSource/meta.json") {
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# my @folders = read_dir($jobSource);
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# if (!@folders) {
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# next;
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# }
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# # Only use first subfolder for now TODO
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# $jobSource = "$jobSource/".$folders[0];
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# }
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# # check if subfolder contains file, else remove source and skip
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# if ( ! -e "$jobSource/meta.json") {
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# # rmtree $jobOrigin;
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# next;
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# }
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my $rawstr = read_file("$jobSource/meta.json");
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my $json = decode_json($rawstr);
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# my $rawstr = read_file("$jobSource/meta.json");
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# my $json = decode_json($rawstr);
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# NOTE Start meta.json iteration here
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# my $random_number = int(rand(UPPERLIMIT)) + LOWERLIMIT;
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# Set new startTime: Between 5 days and 1 day before now
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# # NOTE Start meta.json iteration here
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# # my $random_number = int(rand(UPPERLIMIT)) + LOWERLIMIT;
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# # Set new startTime: Between 5 days and 1 day before now
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# Remove id from attributes
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$json->{startTime} = $epochtime - (int(rand(432000)) + 86400);
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$json->{stopTime} = $json->{startTime} + $json->{duration};
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# # Remove id from attributes
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# $json->{startTime} = $epochtime - (int(rand(432000)) + 86400);
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# $json->{stopTime} = $json->{startTime} + $json->{duration};
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# Add starttime subfolder to target path
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$jobTarget .= $json->{startTime};
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# # Add starttime subfolder to target path
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# $jobTarget .= $json->{startTime};
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# target is not directory
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if ( not -d $jobTarget ){
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# print "Writing files\n";
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# print "$cluster/$level1/$level2\n";
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make_path($jobTarget);
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# # target is not directory
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# if ( not -d $jobTarget ){
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# # print "Writing files\n";
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# # print "$cluster/$level1/$level2\n";
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# make_path($jobTarget);
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my $outstr = encode_json($json);
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write_file("$jobTarget/meta.json", $outstr);
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# my $outstr = encode_json($json);
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# write_file("$jobTarget/meta.json", $outstr);
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my $datstr = read_file("$jobSource/data.json");
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write_file("$jobTarget/data.json", $datstr);
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} else {
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# rmtree $jobSource;
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}
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}
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}
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}
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}
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print "Done for job-archive\n";
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sleep(1);
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# my $datstr = read_file("$jobSource/data.json.gz");
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# write_file("$jobTarget/data.json.gz", $datstr);
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# } else {
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# # rmtree $jobSource;
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# }
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# }
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# }
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# }
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# }
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# print "Done for job-archive\n";
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# sleep(1);
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## CHECKPOINTS
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chomp(my $checkpointStart=`date --date 'TZ="Europe/Berlin" 0:00 7 days ago' +%s`);
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33
setupDev.sh
33
setupDev.sh
@ -10,6 +10,7 @@ else
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if [ ! -d var ]; then
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mkdir var
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touch var/job.db
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make
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else
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echo "'cc-backend/var' exists. Cautiously exiting."
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echo -n "Stopped."
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@ -17,13 +18,13 @@ else
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fi
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fi
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# Download unedited job-archive to ./data/job-archive-source
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if [ ! -d data/job-archive-source ]; then
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cd data
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wget https://hpc-mover.rrze.uni-erlangen.de/HPC-Data/0x7b58aefb/eig7ahyo6fo2bais0ephuf2aitohv1ai/job-archive-demo.tar
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tar xf job-archive-demo.tar
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mv ./job-archive ./job-archive-source
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# mv ./var/job-archive ./job-archive-source
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# mv -f ./var/job.db ./cc-backend/var/
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# rm -rf ./var
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rm ./job-archive-demo.tar
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cd ..
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else
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@ -32,12 +33,12 @@ fi
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# Download unedited checkpoint files to ./data/cc-metric-store-source/checkpoints
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if [ ! -d data/cc-metric-store-source ]; then
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mkdir -p data/cc-metric-store-source/checkpoints
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cd data/cc-metric-store-source/checkpoints
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wget https://hpc-mover.rrze.uni-erlangen.de/HPC-Data/0x7b58aefb/eig7ahyo6fo2bais0ephuf2aitohv1ai/cc-metric-store-checkpoints.tar.xz
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tar xf cc-metric-store-checkpoints.tar.xz
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rm cc-metric-store-checkpoints.tar.xz
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cd ../../../
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mkdir -p data/cc-metric-store-source/checkpoints
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cd data/cc-metric-store-source/checkpoints
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wget https://hpc-mover.rrze.uni-erlangen.de/HPC-Data/0x7b58aefb/eig7ahyo6fo2bais0ephuf2aitohv1ai/cc-metric-store-checkpoints.tar.xz
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tar xf cc-metric-store-checkpoints.tar.xz
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rm cc-metric-store-checkpoints.tar.xz
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cd ../../../
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else
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echo "'data/cc-metric-store-source' already exists!"
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fi
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@ -52,7 +53,7 @@ fi
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# cleanup sources
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# rm -r ./data/job-archive-source
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# rm -r ./data/cc-metric-store-source
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rm -r ./data/cc-metric-store-source
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# prepare folders for influxdb2
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if [ ! -d data/influxdb ]; then
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@ -67,7 +68,7 @@ if [ ! -d .env ]; then
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cp templates/env.default ./.env
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fi
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|
||||
if [ ! -d docker-compose.yml ]; then
|
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if [ ! -f docker-compose.yml ]; then
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cp templates/docker-compose.yml.default ./docker-compose.yml
|
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fi
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||||
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@ -75,8 +76,8 @@ docker-compose build
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./cc-backend/cc-backend --init-db --add-user demo:admin:AdminDev
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docker-compose up -d
|
||||
|
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echo ""
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echo "Setup complete, containers are up by default: Shut down with 'docker-compose down'."
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echo "Use './cc-backend/cc-backend' to start cc-backend."
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echo "Use scripts in /scripts to load data into influx or mariadb."
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# ./cc-backend/cc-backend
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# echo ""
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# echo "Setup complete, containers are up by default: Shut down with 'docker-compose down'."
|
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# echo "Use './cc-backend/cc-backend' to start cc-backend."
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# echo "Use scripts in /scripts to load data into influx or mariadb."
|
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# # ./cc-backend/cc-backend
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||||
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||||
@ -1,5 +1,5 @@
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||||
FROM rockylinux:8
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||||
MAINTAINER Jan Eitzinger <jan.eitzinger@fau.de>
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LABEL org.opencontainers.image.authors="jan.eitzinger@fau.de"
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|
||||
ENV SLURM_VERSION=22.05.6
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||||
ENV ARCH=aarch64
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||||
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||||
@ -1,5 +1,5 @@
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FROM clustercockpit/slurm.base:22.05.6
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||||
MAINTAINER Jan Eitzinger <jan.eitzinger@fau.de>
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||||
LABEL org.opencontainers.image.authors="jan.eitzinger@fau.de"
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||||
|
||||
# clean up
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||||
RUN rm -f /root/rpmbuild/RPMS/slurm-*.rpm \
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|
||||
@ -1,5 +1,5 @@
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||||
FROM clustercockpit/slurm.base:22.05.6
|
||||
MAINTAINER Jan Eitzinger <jan.eitzinger@fau.de>
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||||
LABEL org.opencontainers.image.authors="jan.eitzinger@fau.de"
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||||
|
||||
# clean up
|
||||
RUN rm -f /root/rpmbuild/RPMS/slurm-*.rpm \
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|
||||
@ -1,5 +1,5 @@
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||||
FROM clustercockpit/slurm.base:22.05.6
|
||||
MAINTAINER Jan Eitzinger <jan.eitzinger@fau.de>
|
||||
LABEL org.opencontainers.image.authors="jan.eitzinger@fau.de"
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||||
|
||||
# clean up
|
||||
RUN rm -f /root/rpmbuild/RPMS/slurm-*.rpm \
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||||
|
||||
@ -1,5 +1,5 @@
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||||
FROM clustercockpit/slurm.base:22.05.6
|
||||
MAINTAINER Jan Eitzinger <jan.eitzinger@fau.de>
|
||||
LABEL org.opencontainers.image.authors="jan.eitzinger@fau.de"
|
||||
|
||||
# clean up
|
||||
RUN rm -f /root/rpmbuild/RPMS/slurm-*.rpm \
|
||||
|
||||
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Block a user