mirror of
https://github.com/ClusterCockpit/cc-docker.git
synced 2025-07-23 05:11:41 +02:00
Continue reworking docker setup
This commit is contained in:
45
slurm/base/Dockerfile
Normal file
45
slurm/base/Dockerfile
Normal file
@@ -0,0 +1,45 @@
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FROM rockylinux:8
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MAINTAINER Jan Eitzinger <jan.eitzinger@fau.de>
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ENV SLURM_VERSION=22.05.6
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ENV ARCH=aarch64
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RUN yum install https://dl.fedoraproject.org/pub/epel/epel-release-latest-8.noarch.rpm -y
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RUN groupadd -g 981 munge \
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&& useradd -m -c "MUNGE Uid 'N' Gid Emporium" -d /var/lib/munge -u 981 -g munge -s /sbin/nologin munge \
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&& groupadd -g 982 slurm \
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&& useradd -m -c "Slurm workload manager" -d /var/lib/slurm -u 982 -g slurm -s /bin/bash slurm \
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&& groupadd -g 1000 worker \
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&& useradd -m -c "Workflow user" -d /home/worker -u 1000 -g worker -s /bin/bash worker
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RUN yum install -y munge munge-libs
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RUN dnf --enablerepo=powertools install munge-devel -y
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RUN yum install rng-tools -y
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RUN yum install -y python3 gcc openssl openssl-devel \
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pam-devel numactl numactl-devel hwloc sudo \
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lua readline-devel ncurses-devel man2html \
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libibmad libibumad rpm-build perl-ExtUtils-MakeMaker.noarch rpm-build make wget
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RUN dnf --enablerepo=powertools install rrdtool-devel lua-devel hwloc-devel rpm-build -y
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RUN dnf install mariadb-server mariadb-devel -y
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RUN mkdir /usr/local/slurm-tmp
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RUN cd /usr/local/slurm-tmp
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RUN wget https://download.schedmd.com/slurm/slurm-${SLURM_VERSION}.tar.bz2
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RUN rpmbuild -ta slurm-${SLURM_VERSION}.tar.bz2
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WORKDIR /root/rpmbuild/RPMS/${ARCH}
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RUN yum -y --nogpgcheck localinstall \
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slurm-${SLURM_VERSION}-1.el8.${ARCH}.rpm \
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slurm-perlapi-${SLURM_VERSION}-1.el8.${ARCH}.rpm \
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slurm-slurmctld-${SLURM_VERSION}-1.el8.${ARCH}.rpm
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WORKDIR /
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VOLUME ["/home", "/.secret"]
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# 22: SSH
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# 3306: MariaDB
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# 6817: SlurmCtlD
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# 6818: SlurmD
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# 6819: SlurmDBD
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EXPOSE 22 3306 6817 6818 6819
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@@ -1,51 +1,10 @@
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FROM rockylinux:8
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FROM clustercockpit/slurm.base:latest
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MAINTAINER Jan Eitzinger <jan.eitzinger@fau.de>
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ENV SLURM_VERSION=19.05.1 \
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MUNGE_UID=981 \
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SLURM_UID=982 \
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WORKER_UID=1000
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RUN yum install https://dl.fedoraproject.org/pub/epel/epel-release-latest-8.noarch.rpm -y
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RUN groupadd -g $MUNGE_UID munge \
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&& useradd -m -c "MUNGE Uid 'N' Gid Emporium" -d /var/lib/munge -u $MUNGE_UID -g munge -s /sbin/nologin munge \
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&& groupadd -g $SLURM_UID slurm \
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&& useradd -m -c "Slurm workload manager" -d /var/lib/slurm -u $SLURM_UID -g slurm -s /bin/bash slurm \
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&& groupadd -g $WORKER_UID worker \
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&& useradd -m -c "Workflow user" -d /home/worker -u $WORKER_UID -g worker -s /bin/bash worker
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RUN yum install -y munge munge-libs
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RUN dnf --enablerepo=powertools install munge-devel -y
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RUN yum install rng-tools -y
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RUN yum install -y python3 gcc openssl openssl-devel \
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pam-devel numactl numactl-devel hwloc sudo \
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lua readline-devel ncurses-devel man2html \
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libibmad libibumad rpm-build perl-ExtUtils-MakeMaker.noarch rpm-build make wget
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RUN dnf --enablerepo=powertools install rrdtool-devel lua-devel hwloc-devel rpm-build -y
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RUN dnf install mariadb-server mariadb-devel -y
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RUN mkdir /usr/local/slurm-tmp
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RUN cd /usr/local/slurm-tmp
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RUN wget https://download.schedmd.com/slurm/slurm-22.05.6.tar.bz2
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RUN rpmbuild -ta slurm-22.05.6.tar.bz2
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ENV USE_SLURMDBD=true \
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CLUSTER_NAME=snowflake \
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CONTROL_MACHINE=controller \
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SLURMCTLD_PORT=6817 \
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SLURMD_PORT=6818 \
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ACCOUNTING_STORAGE_HOST=database \
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ACCOUNTING_STORAGE_PORT=6819 \
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PARTITION_NAME=docker
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# clean up
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RUN rm -f /root/rpmbuild/RPMS/slurm-*.rpm \
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&& yum clean all \
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&& rm -rf /var/cache/yum
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COPY docker-entrypoint.sh /docker-entrypoint.sh
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VOLUME ["/home", "/.secret"]
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# 22: SSH
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# 3306: MariaDB
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# 6817: SlurmCtlD
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# 6818: SlurmD
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# 6819: SlurmDBD
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EXPOSE 22 3306 6817 6818 6819
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ENTRYPOINT ["/docker-entrypoint.sh"]
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@@ -17,22 +17,22 @@ _ssh_worker() {
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chown -R worker:worker /home/worker
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fi
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cat > /home/worker/setup-worker-ssh.sh <<EOF2
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mkdir -p ~/.ssh
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chmod 0700 ~/.ssh
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ssh-keygen -b 2048 -t rsa -f ~/.ssh/id_rsa -q -N "" -C "$(whoami)@$(hostname)-$(date -I)"
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cat ~/.ssh/id_rsa.pub > ~/.ssh/authorized_keys
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chmod 0640 ~/.ssh/authorized_keys
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cat >> ~/.ssh/config <<EOF
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mkdir -p ~/.ssh
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chmod 0700 ~/.ssh
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ssh-keygen -b 2048 -t rsa -f ~/.ssh/id_rsa -q -N "" -C "$(whoami)@$(hostname)-$(date -I)"
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cat ~/.ssh/id_rsa.pub > ~/.ssh/authorized_keys
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chmod 0640 ~/.ssh/authorized_keys
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cat >> ~/.ssh/config <<EOF
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Host *
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StrictHostKeyChecking no
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UserKnownHostsFile /dev/null
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LogLevel QUIET
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EOF
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chmod 0644 ~/.ssh/config
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cd ~/
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tar -czvf ~/worker-secret.tar.gz .ssh
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cd -
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EOF2
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chmod 0644 ~/.ssh/config
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cd ~/
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tar -czvf ~/worker-secret.tar.gz .ssh
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cd -
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EOF2
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chmod +x /home/worker/setup-worker-ssh.sh
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chown worker: /home/worker/setup-worker-ssh.sh
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sudo -u worker /home/worker/setup-worker-ssh.sh
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@@ -66,95 +66,28 @@ _copy_secrets() {
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rm -f /home/worker/setup-worker-ssh.sh
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}
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# generate slurm.conf
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_generate_slurm_conf() {
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cat > /etc/slurm/slurm.conf <<EOF
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#
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# Example slurm.conf file. Please run configurator.html
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# (in doc/html) to build a configuration file customized
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# for your environment.
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#
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#
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# slurm.conf file generated by configurator.html.
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#
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# See the slurm.conf man page for more information.
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#
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ClusterName=$CLUSTER_NAME
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SlurmctldHost=$CONTROL_MACHINE
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SlurmUser=slurm
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SlurmctldPort=$SLURMCTLD_PORT
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SlurmdPort=$SLURMD_PORT
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AuthType=auth/munge
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StateSaveLocation=/var/spool/slurm/ctld
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SlurmdSpoolDir=/var/spool/slurm/d
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SwitchType=switch/none
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MpiDefault=none
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SlurmctldPidFile=/var/run/slurmctld.pid
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SlurmdPidFile=/var/run/slurmd.pid
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ProctrackType=proctrack/pgid
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ReturnToService=0
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#
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# TIMERS
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SlurmctldTimeout=300
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SlurmdTimeout=300
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InactiveLimit=0
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MinJobAge=300
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KillWait=30
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Waittime=0
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#
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# SCHEDULING
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SchedulerType=sched/backfill
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FastSchedule=1
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#
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# LOGGING
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SlurmctldDebug=3
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SlurmctldLogFile=/var/log/slurmctld.log
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SlurmdDebug=3
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SlurmdLogFile=/var/log/slurmd.log
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JobCompType=jobcomp/none
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#JobCompLoc=
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#
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# ACCOUNTING
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JobAcctGatherType=jobacct_gather/linux
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#JobAcctGatherFrequency=30
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#
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AccountingStorageType=accounting_storage/slurmdbd
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AccountingStorageHost=$ACCOUNTING_STORAGE_HOST
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AccountingStoragePort=$ACCOUNTING_STORAGE_PORT
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#AccountingStorageLoc=
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#AccountingStoragePass=
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#AccountingStorageUser=
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#
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# COMPUTE NODES
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NodeName=worker[01-02] RealMemory=1800 CPUs=1 State=UNKNOWN
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PartitionName=$PARTITION_NAME Nodes=ALL Default=YES MaxTime=INFINITE State=UP
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EOF
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}
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# run slurmctld
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_slurmctld() {
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cd /root/rpmbuild/RPMS/aarch64
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yum -y --nogpgcheck localinstall slurm-22.05.6-1.el8.aarch64.rpm slurm-perlapi-22.05.6-1.el8.aarch64.rpm slurm-slurmctld-22.05.6-1.el8.aarch64.rpm
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if $USE_SLURMDBD; then
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echo -n "checking for slurmdbd.conf"
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while [ ! -f /.secret/slurmdbd.conf ]; do
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echo -n "."
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sleep 1
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done
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echo ""
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fi
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mkdir -p /var/spool/slurm/ctld /var/spool/slurmd /var/log/slurm /etc/slurm
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chown -R slurm: /var/spool/slurm/ctld /var/spool/slurmd /var/log/slurm
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echo -n "checking for slurmdbd.conf"
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while [ ! -f /.secret/slurmdbd.conf ]; do
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echo -n "."
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sleep 1
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done
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echo ""
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mkdir -p /var/spool/slurm/ctld /var/spool/slurm/d /var/log/slurm /etc/slurm
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chown -R slurm: /var/spool/slurm/ctld /var/spool/slurm/d /var/log/slurm
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touch /var/log/slurmctld.log
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chown slurm: /var/log/slurmctld.log
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if [[ ! -f /home/config/slurm.conf ]]; then
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echo "### generate slurm.conf ###"
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_generate_slurm_conf
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echo "### Missing slurm.conf ###"
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exit
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else
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echo "### use provided slurm.conf ###"
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cp /home/config/slurm.conf /etc/slurm/slurm.conf
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fi
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sacctmgr -i add cluster "${CLUSTER_NAME}"
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sacctmgr -i add cluster "snowflake"
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sleep 2s
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/usr/sbin/slurmctld
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cp -f /etc/slurm/slurm.conf /.secret/
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@@ -1,51 +1,10 @@
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FROM rockylinux:8
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FROM clustercockpit/slurm.base:latest
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MAINTAINER Jan Eitzinger <jan.eitzinger@fau.de>
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ENV SLURM_VERSION=19.05.1 \
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MUNGE_UID=981 \
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SLURM_UID=982 \
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WORKER_UID=1000
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RUN yum install https://dl.fedoraproject.org/pub/epel/epel-release-latest-8.noarch.rpm -y
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RUN groupadd -g $MUNGE_UID munge \
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&& useradd -m -c "MUNGE Uid 'N' Gid Emporium" -d /var/lib/munge -u $MUNGE_UID -g munge -s /sbin/nologin munge \
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&& groupadd -g $SLURM_UID slurm \
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&& useradd -m -c "Slurm workload manager" -d /var/lib/slurm -u $SLURM_UID -g slurm -s /bin/bash slurm \
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&& groupadd -g $WORKER_UID worker \
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&& useradd -m -c "Workflow user" -d /home/worker -u $WORKER_UID -g worker -s /bin/bash worker
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RUN yum install -y munge munge-libs
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RUN dnf --enablerepo=powertools install munge-devel -y
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RUN yum install rng-tools -y
|
||||
|
||||
RUN yum install -y python3 gcc openssl openssl-devel \
|
||||
pam-devel numactl numactl-devel hwloc sudo \
|
||||
lua readline-devel ncurses-devel man2html \
|
||||
libibmad libibumad rpm-build perl-ExtUtils-MakeMaker.noarch rpm-build make wget
|
||||
|
||||
RUN dnf --enablerepo=powertools install rrdtool-devel lua-devel hwloc-devel rpm-build -y
|
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RUN dnf install mariadb-server mariadb-devel -y
|
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RUN mkdir /usr/local/slurm-tmp
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RUN cd /usr/local/slurm-tmp
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RUN wget https://download.schedmd.com/slurm/slurm-22.05.6.tar.bz2
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RUN rpmbuild -ta slurm-22.05.6.tar.bz2
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ENV DBD_ADDR=database \
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DBD_HOST=database \
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DBD_PORT=6819 \
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STORAGE_HOST=database.local.dev \
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STORAGE_PORT=3306 \
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STORAGE_PASS=password \
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STORAGE_USER=slurm
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# clean up
|
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RUN rm -f /root/rpmbuild/RPMS/slurm-*.rpm \
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&& yum clean all \
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&& rm -rf /var/cache/yum
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COPY docker-entrypoint.sh /docker-entrypoint.sh
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VOLUME ["/home", "/.secret"]
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# 22: SSH
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||||
# 3306: MariaDB
|
||||
# 6817: Slurm Ctl D
|
||||
# 6818: Slurm D
|
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# 6819: Slurm DBD
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EXPOSE 22 3306 6817 6818 6819
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ENTRYPOINT ["/docker-entrypoint.sh"]
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@@ -16,10 +16,10 @@ _sshd_host() {
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_slurm_acct_db() {
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{
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echo "create database slurm_acct_db;"
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echo "create user '${STORAGE_USER}'@'${STORAGE_HOST}';"
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echo "set password for '${STORAGE_USER}'@'${STORAGE_HOST}' = password('${STORAGE_PASS}');"
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echo "grant usage on *.* to '${STORAGE_USER}'@'${STORAGE_HOST}';"
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echo "grant all privileges on slurm_acct_db.* to '${STORAGE_USER}'@'${STORAGE_HOST}';"
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echo "create user 'slurm'@slurmdb'';"
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echo "set password for 'slurm'@'slurmdb' = password('demo');"
|
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echo "grant usage on *.* to 'slurm'@'slurmdb';"
|
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echo "grant all privileges on slurm_acct_db.* to 'slurm'@'slurmdb';"
|
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echo "flush privileges;"
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} >> $SLURM_ACCT_DB_SQL
|
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}
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||||
@@ -72,50 +72,6 @@ _wait_for_worker() {
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fi
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||||
}
|
||||
|
||||
# generate slurmdbd.conf
|
||||
_generate_slurmdbd_conf() {
|
||||
cat > /etc/slurm/slurmdbd.conf <<EOF
|
||||
#
|
||||
# Example slurmdbd.conf file.
|
||||
#
|
||||
# See the slurmdbd.conf man page for more information.
|
||||
#
|
||||
# Archive info
|
||||
#ArchiveJobs=yes
|
||||
#ArchiveDir="/tmp"
|
||||
#ArchiveSteps=yes
|
||||
#ArchiveScript=
|
||||
#JobPurge=12
|
||||
#StepPurge=1
|
||||
#
|
||||
# Authentication info
|
||||
AuthType=auth/munge
|
||||
AuthInfo=/var/run/munge/munge.socket.2
|
||||
#
|
||||
# slurmDBD info
|
||||
DbdAddr=$DBD_ADDR
|
||||
DbdHost=$DBD_HOST
|
||||
DbdPort=$DBD_PORT
|
||||
SlurmUser=slurm
|
||||
#MessageTimeout=300
|
||||
DebugLevel=4
|
||||
#DefaultQOS=normal,standby
|
||||
LogFile=/var/log/slurm/slurmdbd.log
|
||||
PidFile=/var/run/slurmdbd.pid
|
||||
#PluginDir=/usr/lib/slurm
|
||||
#PrivateData=accounts,users,usage,jobs
|
||||
#TrackWCKey=yes
|
||||
#
|
||||
# Database info
|
||||
StorageType=accounting_storage/mysql
|
||||
StorageHost=$STORAGE_HOST
|
||||
StoragePort=$STORAGE_PORT
|
||||
StoragePass=$STORAGE_PASS
|
||||
StorageUser=$STORAGE_USER
|
||||
StorageLoc=slurm_acct_db
|
||||
EOF
|
||||
}
|
||||
|
||||
# run slurmdbd
|
||||
_slurmdbd() {
|
||||
mkdir -p /var/spool/slurm/d \
|
||||
@@ -123,8 +79,8 @@ _slurmdbd() {
|
||||
chown slurm: /var/spool/slurm/d \
|
||||
/var/log/slurm
|
||||
if [[ ! -f /home/config/slurmdbd.conf ]]; then
|
||||
echo "### generate slurmdbd.conf ###"
|
||||
_generate_slurmdbd_conf
|
||||
echo "### Missing slurmdbd.conf ###"
|
||||
exit
|
||||
else
|
||||
echo "### use provided slurmdbd.conf ###"
|
||||
cp /home/config/slurmdbd.conf /etc/slurm/slurmdbd.conf
|
||||
|
||||
@@ -1,48 +0,0 @@
|
||||
# slurm.conf file generated by configurator.html.
|
||||
# Put this file on all nodes of your cluster.
|
||||
# See the slurm.conf man page for more information.
|
||||
#
|
||||
ClusterName=snowflake
|
||||
SlurmctldHost=linux0
|
||||
SlurmUser=slurm
|
||||
SlurmctldPort=6817
|
||||
SlurmdPort=6818
|
||||
MpiDefault=none
|
||||
ProctrackType=proctrack/cgroup
|
||||
ReturnToService=1
|
||||
SlurmctldPidFile=/var/run/slurmctld.pid
|
||||
SlurmdPidFile=/var/run/slurmd.pid
|
||||
SlurmdSpoolDir=/var/spool/slurmd
|
||||
StateSaveLocation=/var/spool/slurmctld
|
||||
SwitchType=switch/none
|
||||
TaskPlugin=task/affinity,task/cgroup
|
||||
#
|
||||
# TIMERS
|
||||
InactiveLimit=0
|
||||
KillWait=30
|
||||
MinJobAge=300
|
||||
SlurmctldTimeout=120
|
||||
SlurmdTimeout=300
|
||||
Waittime=0
|
||||
#
|
||||
# SCHEDULING
|
||||
SchedulerType=sched/backfill
|
||||
SelectType=select/cons_tres
|
||||
#
|
||||
# LOGGING AND ACCOUNTING
|
||||
AccountingStorageHost=slurm-db
|
||||
AccountingStoragePort=6818
|
||||
AccountingStorageType=accounting_storage/slurmdbd
|
||||
AccountingStorageUser=slurm
|
||||
AccountingStoreFlags=job_script,job_comment,job_env,job_extra
|
||||
JobCompType=jobcomp/none
|
||||
JobAcctGatherFrequency=30
|
||||
JobAcctGatherType=jobacct_gather/cgroup
|
||||
SlurmctldDebug=info
|
||||
SlurmctldLogFile=/var/log/slurmctld.log
|
||||
SlurmdDebug=info
|
||||
SlurmdLogFile=/var/log/slurmd.log
|
||||
#
|
||||
# COMPUTE NODES
|
||||
NodeName=linux[1-32] CPUs=1 State=UNKNOWN
|
||||
PartitionName=debug Nodes=ALL Default=YES MaxTime=INFINITE State=UP
|
||||
@@ -1,43 +1,11 @@
|
||||
FROM rockylinux:8
|
||||
FROM clustercockpit/slurm.base:latest
|
||||
MAINTAINER Jan Eitzinger <jan.eitzinger@fau.de>
|
||||
|
||||
ENV SLURM_VERSION=19.05.1 \
|
||||
MUNGE_UID=981 \
|
||||
SLURM_UID=982 \
|
||||
WORKER_UID=1000
|
||||
# clean up
|
||||
RUN rm -f /root/rpmbuild/RPMS/slurm-*.rpm \
|
||||
&& yum clean all \
|
||||
&& rm -rf /var/cache/yum
|
||||
|
||||
RUN yum install https://dl.fedoraproject.org/pub/epel/epel-release-latest-8.noarch.rpm -y
|
||||
|
||||
RUN groupadd -g $MUNGE_UID munge \
|
||||
&& useradd -m -c "MUNGE Uid 'N' Gid Emporium" -d /var/lib/munge -u $MUNGE_UID -g munge -s /sbin/nologin munge \
|
||||
&& groupadd -g $SLURM_UID slurm \
|
||||
&& useradd -m -c "Slurm workload manager" -d /var/lib/slurm -u $SLURM_UID -g slurm -s /bin/bash slurm \
|
||||
&& groupadd -g $WORKER_UID worker \
|
||||
&& useradd -m -c "Workflow user" -d /home/worker -u $WORKER_UID -g worker -s /bin/bash worker
|
||||
|
||||
RUN yum install -y munge munge-libs
|
||||
RUN dnf --enablerepo=powertools install munge-devel -y
|
||||
RUN yum install rng-tools -y
|
||||
|
||||
RUN yum install -y python3 gcc openssl openssl-devel \
|
||||
pam-devel numactl numactl-devel hwloc sudo \
|
||||
lua readline-devel ncurses-devel man2html \
|
||||
libibmad libibumad rpm-build perl-ExtUtils-MakeMaker.noarch rpm-build make wget
|
||||
|
||||
RUN dnf --enablerepo=powertools install rrdtool-devel lua-devel hwloc-devel rpm-build -y
|
||||
RUN dnf install mariadb-server mariadb-devel -y
|
||||
RUN mkdir /usr/local/slurm-tmp
|
||||
RUN cd /usr/local/slurm-tmp
|
||||
RUN wget https://download.schedmd.com/slurm/slurm-22.05.6.tar.bz2
|
||||
RUN rpmbuild -ta slurm-22.05.6.tar.bz2
|
||||
|
||||
VOLUME ["/home", "/.secret"]
|
||||
# 22: SSH
|
||||
# 3306: MariaDB
|
||||
# 6817: SlurmCtlD
|
||||
# 6818: SlurmD
|
||||
# 6819: SlurmDBD
|
||||
EXPOSE 22 3306 6817 6818 6819
|
||||
WORKDIR /home/worker
|
||||
COPY docker-entrypoint.sh /docker-entrypoint.sh
|
||||
ENTRYPOINT ["/docker-entrypoint.sh"]
|
||||
|
||||
Reference in New Issue
Block a user