mirror of
https://github.com/ClusterCockpit/cc-backend
synced 2024-11-10 08:57:25 +01:00
631 lines
18 KiB
Go
631 lines
18 KiB
Go
// Copyright (C) NHR@FAU, University Erlangen-Nuremberg.
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// All rights reserved.
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// Use of this source code is governed by a MIT-style
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// license that can be found in the LICENSE file.
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package repository
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import (
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"database/sql"
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"encoding/json"
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"errors"
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"fmt"
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"strconv"
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"sync"
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"time"
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"github.com/ClusterCockpit/cc-backend/internal/graph/model"
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"github.com/ClusterCockpit/cc-backend/pkg/archive"
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"github.com/ClusterCockpit/cc-backend/pkg/log"
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"github.com/ClusterCockpit/cc-backend/pkg/lrucache"
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"github.com/ClusterCockpit/cc-backend/pkg/schema"
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sq "github.com/Masterminds/squirrel"
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"github.com/jmoiron/sqlx"
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)
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var (
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jobRepoOnce sync.Once
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jobRepoInstance *JobRepository
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)
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type JobRepository struct {
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DB *sqlx.DB
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stmtCache *sq.StmtCache
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cache *lrucache.Cache
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driver string
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}
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func GetJobRepository() *JobRepository {
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jobRepoOnce.Do(func() {
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db := GetConnection()
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jobRepoInstance = &JobRepository{
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DB: db.DB,
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driver: db.Driver,
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stmtCache: sq.NewStmtCache(db.DB),
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cache: lrucache.New(1024 * 1024),
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}
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})
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return jobRepoInstance
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}
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var jobColumns []string = []string{
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"job.id", "job.job_id", "job.user", "job.project", "job.cluster", "job.subcluster", "job.start_time", "job.partition", "job.array_job_id",
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"job.num_nodes", "job.num_hwthreads", "job.num_acc", "job.exclusive", "job.monitoring_status", "job.smt", "job.job_state",
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"job.duration", "job.walltime", "job.resources", "job.footprint", // "job.meta_data",
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}
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func scanJob(row interface{ Scan(...interface{}) error }) (*schema.Job, error) {
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job := &schema.Job{}
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if err := row.Scan(
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&job.ID, &job.JobID, &job.User, &job.Project, &job.Cluster, &job.SubCluster, &job.StartTimeUnix, &job.Partition, &job.ArrayJobId,
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&job.NumNodes, &job.NumHWThreads, &job.NumAcc, &job.Exclusive, &job.MonitoringStatus, &job.SMT, &job.State,
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&job.Duration, &job.Walltime, &job.RawResources, &job.RawFootprint /*&job.RawMetaData*/); err != nil {
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log.Warnf("Error while scanning rows (Job): %v", err)
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return nil, err
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}
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if err := json.Unmarshal(job.RawResources, &job.Resources); err != nil {
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log.Warn("Error while unmarshaling raw resources json")
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return nil, err
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}
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job.RawResources = nil
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if err := json.Unmarshal(job.RawFootprint, &job.Footprint); err != nil {
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log.Warnf("Error while unmarshaling raw footprint json: %v", err)
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return nil, err
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}
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job.RawFootprint = nil
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// if err := json.Unmarshal(job.RawMetaData, &job.MetaData); err != nil {
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// return nil, err
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// }
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job.StartTime = time.Unix(job.StartTimeUnix, 0)
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if job.Duration == 0 && job.State == schema.JobStateRunning {
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job.Duration = int32(time.Since(job.StartTime).Seconds())
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}
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return job, nil
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}
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func (r *JobRepository) Optimize() error {
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var err error
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switch r.driver {
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case "sqlite3":
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if _, err = r.DB.Exec(`VACUUM`); err != nil {
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return err
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}
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case "mysql":
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log.Info("Optimize currently not supported for mysql driver")
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}
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return nil
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}
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func (r *JobRepository) Flush() error {
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var err error
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switch r.driver {
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case "sqlite3":
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if _, err = r.DB.Exec(`DELETE FROM jobtag`); err != nil {
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return err
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}
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if _, err = r.DB.Exec(`DELETE FROM tag`); err != nil {
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return err
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}
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if _, err = r.DB.Exec(`DELETE FROM job`); err != nil {
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return err
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}
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case "mysql":
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if _, err = r.DB.Exec(`SET FOREIGN_KEY_CHECKS = 0`); err != nil {
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return err
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}
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if _, err = r.DB.Exec(`TRUNCATE TABLE jobtag`); err != nil {
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return err
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}
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if _, err = r.DB.Exec(`TRUNCATE TABLE tag`); err != nil {
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return err
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}
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if _, err = r.DB.Exec(`TRUNCATE TABLE job`); err != nil {
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return err
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}
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if _, err = r.DB.Exec(`SET FOREIGN_KEY_CHECKS = 1`); err != nil {
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return err
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}
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}
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return nil
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}
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func scanJobLink(row interface{ Scan(...interface{}) error }) (*model.JobLink, error) {
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jobLink := &model.JobLink{}
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if err := row.Scan(
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&jobLink.ID, &jobLink.JobID); err != nil {
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log.Warn("Error while scanning rows (jobLink)")
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return nil, err
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}
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return jobLink, nil
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}
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func (r *JobRepository) FetchMetadata(job *schema.Job) (map[string]string, error) {
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start := time.Now()
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cachekey := fmt.Sprintf("metadata:%d", job.ID)
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if cached := r.cache.Get(cachekey, nil); cached != nil {
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job.MetaData = cached.(map[string]string)
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return job.MetaData, nil
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}
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if err := sq.Select("job.meta_data").From("job").Where("job.id = ?", job.ID).
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RunWith(r.stmtCache).QueryRow().Scan(&job.RawMetaData); err != nil {
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log.Warn("Error while scanning for job metadata")
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return nil, err
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}
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if len(job.RawMetaData) == 0 {
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return nil, nil
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}
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if err := json.Unmarshal(job.RawMetaData, &job.MetaData); err != nil {
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log.Warn("Error while unmarshaling raw metadata json")
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return nil, err
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}
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r.cache.Put(cachekey, job.MetaData, len(job.RawMetaData), 24*time.Hour)
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log.Debugf("Timer FetchMetadata %s", time.Since(start))
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return job.MetaData, nil
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}
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func (r *JobRepository) UpdateMetadata(job *schema.Job, key, val string) (err error) {
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cachekey := fmt.Sprintf("metadata:%d", job.ID)
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r.cache.Del(cachekey)
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if job.MetaData == nil {
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if _, err = r.FetchMetadata(job); err != nil {
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log.Warnf("Error while fetching metadata for job, DB ID '%v'", job.ID)
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return err
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}
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}
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if job.MetaData != nil {
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cpy := make(map[string]string, len(job.MetaData)+1)
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for k, v := range job.MetaData {
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cpy[k] = v
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}
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cpy[key] = val
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job.MetaData = cpy
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} else {
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job.MetaData = map[string]string{key: val}
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}
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if job.RawMetaData, err = json.Marshal(job.MetaData); err != nil {
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log.Warnf("Error while marshaling metadata for job, DB ID '%v'", job.ID)
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return err
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}
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if _, err = sq.Update("job").
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Set("meta_data", job.RawMetaData).
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Where("job.id = ?", job.ID).
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RunWith(r.stmtCache).Exec(); err != nil {
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log.Warnf("Error while updating metadata for job, DB ID '%v'", job.ID)
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return err
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}
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r.cache.Put(cachekey, job.MetaData, len(job.RawMetaData), 24*time.Hour)
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return archive.UpdateMetadata(job, job.MetaData)
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}
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func (r *JobRepository) FetchFootprint(job *schema.Job) (map[string]float64, error) {
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start := time.Now()
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cachekey := fmt.Sprintf("footprint:%d", job.ID)
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if cached := r.cache.Get(cachekey, nil); cached != nil {
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job.Footprint = cached.(map[string]float64)
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return job.Footprint, nil
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}
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if err := sq.Select("job.footprint").From("job").Where("job.id = ?", job.ID).
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RunWith(r.stmtCache).QueryRow().Scan(&job.RawFootprint); err != nil {
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log.Warn("Error while scanning for job footprint")
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return nil, err
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}
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if len(job.RawFootprint) == 0 {
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return nil, nil
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}
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if err := json.Unmarshal(job.RawFootprint, &job.Footprint); err != nil {
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log.Warn("Error while unmarshaling raw footprint json")
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return nil, err
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}
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r.cache.Put(cachekey, job.Footprint, len(job.Footprint), 24*time.Hour)
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log.Debugf("Timer FetchFootprint %s", time.Since(start))
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return job.Footprint, nil
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}
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func (r *JobRepository) DeleteJobsBefore(startTime int64) (int, error) {
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var cnt int
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q := sq.Select("count(*)").From("job").Where("job.start_time < ?", startTime)
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q.RunWith(r.DB).QueryRow().Scan(cnt)
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qd := sq.Delete("job").Where("job.start_time < ?", startTime)
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_, err := qd.RunWith(r.DB).Exec()
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if err != nil {
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s, _, _ := qd.ToSql()
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log.Errorf(" DeleteJobsBefore(%d) with %s: error %#v", startTime, s, err)
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} else {
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log.Debugf("DeleteJobsBefore(%d): Deleted %d jobs", startTime, cnt)
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}
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return cnt, err
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}
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func (r *JobRepository) DeleteJobById(id int64) error {
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qd := sq.Delete("job").Where("job.id = ?", id)
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_, err := qd.RunWith(r.DB).Exec()
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if err != nil {
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s, _, _ := qd.ToSql()
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log.Errorf("DeleteJobById(%d) with %s : error %#v", id, s, err)
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} else {
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log.Debugf("DeleteJobById(%d): Success", id)
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}
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return err
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}
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func (r *JobRepository) FindUserOrProjectOrJobname(user *schema.User, searchterm string) (jobid string, username string, project string, jobname string) {
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if _, err := strconv.Atoi(searchterm); err == nil { // Return empty on successful conversion: parent method will redirect for integer jobId
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return searchterm, "", "", ""
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} else { // Has to have letters and logged-in user for other guesses
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if user != nil {
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// Find username in jobs (match)
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uresult, _ := r.FindColumnValue(user, searchterm, "job", "user", "user", false)
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if uresult != "" {
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return "", uresult, "", ""
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}
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// Find username by name (like)
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nresult, _ := r.FindColumnValue(user, searchterm, "user", "username", "name", true)
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if nresult != "" {
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return "", nresult, "", ""
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}
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// Find projectId in jobs (match)
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presult, _ := r.FindColumnValue(user, searchterm, "job", "project", "project", false)
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if presult != "" {
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return "", "", presult, ""
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}
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}
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// Return searchterm if no match before: Forward as jobname query to GQL in handleSearchbar function
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return "", "", "", searchterm
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}
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}
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var (
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ErrNotFound = errors.New("no such jobname, project or user")
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ErrForbidden = errors.New("not authorized")
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)
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func (r *JobRepository) FindColumnValue(user *schema.User, searchterm string, table string, selectColumn string, whereColumn string, isLike bool) (result string, err error) {
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compareStr := " = ?"
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query := searchterm
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if isLike {
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compareStr = " LIKE ?"
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query = "%" + searchterm + "%"
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}
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if user.HasAnyRole([]schema.Role{schema.RoleAdmin, schema.RoleSupport, schema.RoleManager}) {
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theQuery := sq.Select(table+"."+selectColumn).Distinct().From(table).
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Where(table+"."+whereColumn+compareStr, query)
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// theSql, args, theErr := theQuery.ToSql()
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// if theErr != nil {
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// log.Warn("Error while converting query to sql")
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// return "", err
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// }
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// log.Debugf("SQL query (FindColumnValue): `%s`, args: %#v", theSql, args)
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err := theQuery.RunWith(r.stmtCache).QueryRow().Scan(&result)
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if err != nil && err != sql.ErrNoRows {
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return "", err
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} else if err == nil {
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return result, nil
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}
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return "", ErrNotFound
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} else {
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log.Infof("Non-Admin User %s : Requested Query '%s' on table '%s' : Forbidden", user.Name, query, table)
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return "", ErrForbidden
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}
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}
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func (r *JobRepository) FindColumnValues(user *schema.User, query string, table string, selectColumn string, whereColumn string) (results []string, err error) {
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emptyResult := make([]string, 0)
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if user.HasAnyRole([]schema.Role{schema.RoleAdmin, schema.RoleSupport, schema.RoleManager}) {
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rows, err := sq.Select(table+"."+selectColumn).Distinct().From(table).
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Where(table+"."+whereColumn+" LIKE ?", fmt.Sprint("%", query, "%")).
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RunWith(r.stmtCache).Query()
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if err != nil && err != sql.ErrNoRows {
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return emptyResult, err
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} else if err == nil {
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for rows.Next() {
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var result string
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err := rows.Scan(&result)
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if err != nil {
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rows.Close()
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log.Warnf("Error while scanning rows: %v", err)
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return emptyResult, err
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}
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results = append(results, result)
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}
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return results, nil
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}
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return emptyResult, ErrNotFound
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} else {
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log.Infof("Non-Admin User %s : Requested Query '%s' on table '%s' : Forbidden", user.Name, query, table)
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return emptyResult, ErrForbidden
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}
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}
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func (r *JobRepository) Partitions(cluster string) ([]string, error) {
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var err error
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start := time.Now()
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partitions := r.cache.Get("partitions:"+cluster, func() (interface{}, time.Duration, int) {
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parts := []string{}
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if err = r.DB.Select(&parts, `SELECT DISTINCT job.partition FROM job WHERE job.cluster = ?;`, cluster); err != nil {
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return nil, 0, 1000
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}
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return parts, 1 * time.Hour, 1
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})
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if err != nil {
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return nil, err
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}
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log.Debugf("Timer Partitions %s", time.Since(start))
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return partitions.([]string), nil
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}
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// AllocatedNodes returns a map of all subclusters to a map of hostnames to the amount of jobs running on that host.
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// Hosts with zero jobs running on them will not show up!
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func (r *JobRepository) AllocatedNodes(cluster string) (map[string]map[string]int, error) {
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start := time.Now()
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subclusters := make(map[string]map[string]int)
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rows, err := sq.Select("resources", "subcluster").From("job").
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Where("job.job_state = 'running'").
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Where("job.cluster = ?", cluster).
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RunWith(r.stmtCache).Query()
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if err != nil {
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log.Error("Error while running query")
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return nil, err
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}
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var raw []byte
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defer rows.Close()
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for rows.Next() {
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raw = raw[0:0]
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var resources []*schema.Resource
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var subcluster string
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if err := rows.Scan(&raw, &subcluster); err != nil {
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log.Warn("Error while scanning rows")
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return nil, err
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}
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if err := json.Unmarshal(raw, &resources); err != nil {
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log.Warn("Error while unmarshaling raw resources json")
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return nil, err
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}
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hosts, ok := subclusters[subcluster]
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if !ok {
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hosts = make(map[string]int)
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subclusters[subcluster] = hosts
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}
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for _, resource := range resources {
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hosts[resource.Hostname] += 1
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}
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}
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log.Debugf("Timer AllocatedNodes %s", time.Since(start))
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return subclusters, nil
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}
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func (r *JobRepository) StopJobsExceedingWalltimeBy(seconds int) error {
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start := time.Now()
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res, err := sq.Update("job").
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Set("monitoring_status", schema.MonitoringStatusArchivingFailed).
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Set("duration", 0).
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Set("job_state", schema.JobStateFailed).
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Where("job.job_state = 'running'").
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Where("job.walltime > 0").
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Where(fmt.Sprintf("(%d - job.start_time) > (job.walltime + %d)", time.Now().Unix(), seconds)).
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RunWith(r.DB).Exec()
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if err != nil {
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log.Warn("Error while stopping jobs exceeding walltime")
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return err
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}
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rowsAffected, err := res.RowsAffected()
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if err != nil {
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log.Warn("Error while fetching affected rows after stopping due to exceeded walltime")
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return err
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}
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if rowsAffected > 0 {
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log.Infof("%d jobs have been marked as failed due to running too long", rowsAffected)
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}
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log.Debugf("Timer StopJobsExceedingWalltimeBy %s", time.Since(start))
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return nil
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}
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func (r *JobRepository) FindRunningJobs(cluster string) ([]*schema.Job, error) {
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query := sq.Select(jobColumns...).From("job").
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Where(fmt.Sprintf("job.cluster = '%s'", cluster)).
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Where("job.job_state = 'running'").
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Where("job.duration>600")
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rows, err := query.RunWith(r.stmtCache).Query()
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if err != nil {
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log.Error("Error while running query")
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return nil, err
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}
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jobs := make([]*schema.Job, 0, 50)
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for rows.Next() {
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job, err := scanJob(rows)
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if err != nil {
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rows.Close()
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log.Warn("Error while scanning rows")
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return nil, err
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}
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jobs = append(jobs, job)
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}
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log.Infof("Return job count %d", len(jobs))
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return jobs, nil
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}
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func (r *JobRepository) UpdateDuration() error {
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if _, err := sq.Update("job").
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Set("duration", sq.Expr("? - job.start_time", time.Now().Unix())).
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Where("job_state = running").
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RunWith(r.stmtCache).Exec(); err != nil {
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return err
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}
|
|
|
|
return nil
|
|
}
|
|
|
|
func (r *JobRepository) FindJobsBetween(startTimeBegin int64, startTimeEnd int64) ([]*schema.Job, error) {
|
|
var query sq.SelectBuilder
|
|
|
|
if startTimeBegin == startTimeEnd || startTimeBegin > startTimeEnd {
|
|
return nil, errors.New("startTimeBegin is equal or larger startTimeEnd")
|
|
}
|
|
|
|
if startTimeBegin == 0 {
|
|
log.Infof("Find jobs before %d", startTimeEnd)
|
|
query = sq.Select(jobColumns...).From("job").Where(fmt.Sprintf(
|
|
"job.start_time < %d", startTimeEnd))
|
|
} else {
|
|
log.Infof("Find jobs between %d and %d", startTimeBegin, startTimeEnd)
|
|
query = sq.Select(jobColumns...).From("job").Where(fmt.Sprintf(
|
|
"job.start_time BETWEEN %d AND %d", startTimeBegin, startTimeEnd))
|
|
}
|
|
|
|
rows, err := query.RunWith(r.stmtCache).Query()
|
|
if err != nil {
|
|
log.Error("Error while running query")
|
|
return nil, err
|
|
}
|
|
|
|
jobs := make([]*schema.Job, 0, 50)
|
|
for rows.Next() {
|
|
job, err := scanJob(rows)
|
|
if err != nil {
|
|
rows.Close()
|
|
log.Warn("Error while scanning rows")
|
|
return nil, err
|
|
}
|
|
jobs = append(jobs, job)
|
|
}
|
|
|
|
log.Infof("Return job count %d", len(jobs))
|
|
return jobs, nil
|
|
}
|
|
|
|
func (r *JobRepository) UpdateMonitoringStatus(job int64, monitoringStatus int32) (err error) {
|
|
stmt := sq.Update("job").
|
|
Set("monitoring_status", monitoringStatus).
|
|
Where("job.id = ?", job)
|
|
|
|
_, err = stmt.RunWith(r.stmtCache).Exec()
|
|
return
|
|
}
|
|
|
|
func (r *JobRepository) Execute(stmt sq.UpdateBuilder) error {
|
|
if _, err := stmt.RunWith(r.stmtCache).Exec(); err != nil {
|
|
return err
|
|
}
|
|
|
|
return nil
|
|
}
|
|
|
|
func (r *JobRepository) MarkArchived(
|
|
stmt sq.UpdateBuilder,
|
|
monitoringStatus int32,
|
|
) sq.UpdateBuilder {
|
|
return stmt.Set("monitoring_status", monitoringStatus)
|
|
}
|
|
|
|
func (r *JobRepository) UpdateEnergy(
|
|
stmt sq.UpdateBuilder,
|
|
jobMeta *schema.JobMeta,
|
|
) (sq.UpdateBuilder, error) {
|
|
sc, err := archive.GetSubCluster(jobMeta.Cluster, jobMeta.SubCluster)
|
|
if err != nil {
|
|
log.Errorf("cannot get subcluster: %s", err.Error())
|
|
return stmt, err
|
|
}
|
|
energyFootprint := make(map[string]float64)
|
|
var totalEnergy float64
|
|
var energy float64
|
|
|
|
for _, fp := range sc.EnergyFootprint {
|
|
if i, err := archive.MetricIndex(sc.MetricConfig, fp); err != nil {
|
|
// FIXME: Check for unit conversions
|
|
if sc.MetricConfig[i].Energy == "power" {
|
|
energy = LoadJobStat(jobMeta, fp, "avg") * float64(jobMeta.Duration)
|
|
} else if sc.MetricConfig[i].Energy == "energy" {
|
|
// This assumes the metric is of aggregation type sum
|
|
}
|
|
}
|
|
|
|
energyFootprint[fp] = energy
|
|
totalEnergy += energy
|
|
}
|
|
|
|
var rawFootprint []byte
|
|
|
|
if rawFootprint, err = json.Marshal(energyFootprint); err != nil {
|
|
log.Warnf("Error while marshaling energy footprint for job, DB ID '%v'", jobMeta.ID)
|
|
return stmt, err
|
|
}
|
|
|
|
stmt.Set("energy_footprint", rawFootprint).
|
|
Set("energy", totalEnergy)
|
|
|
|
return stmt, nil
|
|
}
|
|
|
|
func (r *JobRepository) UpdateFootprint(
|
|
stmt sq.UpdateBuilder,
|
|
jobMeta *schema.JobMeta,
|
|
) (sq.UpdateBuilder, error) {
|
|
sc, err := archive.GetSubCluster(jobMeta.Cluster, jobMeta.SubCluster)
|
|
if err != nil {
|
|
log.Errorf("cannot get subcluster: %s", err.Error())
|
|
return stmt, err
|
|
}
|
|
footprint := make(map[string]float64)
|
|
|
|
for _, fp := range sc.Footprint {
|
|
statType := "avg"
|
|
|
|
if i, err := archive.MetricIndex(sc.MetricConfig, fp); err != nil {
|
|
statType = sc.MetricConfig[i].Footprint
|
|
}
|
|
|
|
name := fmt.Sprintf("%s_%s", fp, statType)
|
|
footprint[fp] = LoadJobStat(jobMeta, name, statType)
|
|
}
|
|
|
|
var rawFootprint []byte
|
|
|
|
if rawFootprint, err = json.Marshal(footprint); err != nil {
|
|
log.Warnf("Error while marshaling footprint for job, DB ID '%v'", jobMeta.ID)
|
|
return stmt, err
|
|
}
|
|
|
|
stmt.Set("footprint", rawFootprint)
|
|
return stmt, nil
|
|
}
|