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Introduce new golang job-archive backend

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Jan Eitzinger 2021-03-31 07:23:48 +02:00
parent 90ae832c2e
commit b7970585ea
40 changed files with 869 additions and 2798 deletions
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227
README.md
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# HPCJobDatabase
A standardized interface and reference implementation for HPC job data.
The DB and json schema specification is available in the [wiki](https://github.com/RRZE-HPC/HPCJobDatabase/wiki).
# Dependencies
* Getopt::Long
* Pod::Usage
* DateTime::Format::Strptime
* DBD::SQLite
# Setup # Setup
``` * Edit ```./graph/schema.graphqls```
sqlite3 jobDB < initDB.sql * Regenerate code: ```gqlgen generate```
``` * Implement callbacks in ```graph/schema.resolvers.go```
# Helper Scripts # Run server
For all scripts apart from `acQuery.pl` the advice *use the source Luke* holds. * ```go run server.go```
Help text for acQuery:
```
Usage:
acQuery.pl [options] -- <DB file>
Help Options:
--help Show help text
--man Show man page
--hasprofile <true|false> Only show jobs with timerseries metric data
--mode <mode> Set the operation mode
--user <user_id> Search for jobs of specific user
--project <project_id> Search for jobs of specific project
--numnodes <from> <to> Specify range for number of nodes of job
--starttime <from> <to> Specify range for start time of jobs
--duration <from> <to> Specify duration range of jobs
--mem_used <from> <to> Specify range for average main memory capacity of job
--mem_bandwidth <from> <to> Specify range for average main memory bandwidth of job
--flops_any <from> <to> Specify range for average flop any rate of job
Options:
--help Show a brief help information.
--man Read the manual, with examples
--hasprofile [true|false] Only show jobs with or without timerseries
metric data
--mode [ids|query|count|list|stat|perf] Specify output mode. Mode can be
one of:
ids - Print list of job ids matching conditions. One job id per
line.
query - Print the query string and then exit.
count - Only output the number of jobs matching the conditions.
(Default mode)
list - Output a record of every job matching the conditions.
stat - Output job statistic for all jobs matching the
conditions.
perf - Output job performance footprint statistic for all jobs
matching the conditions.
--user Search job for a specific user id.
--project Search job for a specific project.
--duration Specify condition for job duration. This option takes two
arguments: If both arguments are positive integers the condition is
duration between first argument and second argument. If the second
argument is zero condition is duration smaller than first argument. If
first argument is zero condition is duration larger than second
argument. Duration can be in seconds, minutes (append m) or hours
(append h).
--numnodes Specify condition for number of node range of job. This
option takes two arguments: If both arguments are positive integers the
condition is number of nodes between first argument and second argument.
If the second argument is zero condition is number of nodes smaller than
first argument. If first argument is zero condition is number of nodes
larger than second argument.
--starttime Specify condition for the starttime of job. This option
takes two arguments: If both arguments are positive integers the
condition is start time between first argument and second argument. If
the second argument is zero condition is start time smaller than first
argument. If first argument is zero condition is start time larger than
second argument. Start time must be given as date in the following
format: %d.%m.%Y/%H:%M.
--mem_used Specify condition for average main memory capacity used by
job. This option takes two arguments: If both arguments are positive
integers the condition is memory used is between first argument and
second argument. If the second argument is zero condition is memory used
is smaller than first argument. If first argument is zero condition is
memory used is larger than second argument.
--mem_bandwidth Specify condition for average main memory bandwidth used
by job. This option takes two arguments: If both arguments are positive
integers the condition is memory bandwidth is between first argument and
second argument. If the second argument is zero condition is memory
bandwidth is smaller than first argument. If first argument is zero
condition is memory bandwidth is larger than second argument.
--flops_any Specify condition for average flops any of job. This option
takes two arguments: If both arguments are positive integers the
condition is flops any is between first argument and second argument. If
the second argument is zero condition is flops any is smaller than first
argument. If first argument is zero condition is flops any is larger
than second argument.
```
# Examples
Query jobs with conditions:
```
[HPCJobDatabase] ./acQuery.pl --duration 20h 24h --starttime 01.08.2018/12:00 01.03.2019/12:00
COUNT 6476
```
Query jobs from alternative database file (default is jobDB):
```
[HPCJobDatabase] ./acQuery.pl --project project_30 --starttime 01.08.2018/12:00 01.03.2019/12:00 -- jobDB-anon-emmy
COUNT 21560
```
Get job statistics output:
```
[HPCJobDatabase] ./acQuery.pl --project project_30 --mode stat --duration 0 20h --starttime 01.08.2018/12:00 01.03.2019/12:00 -- jobDB-anon-emmy
=================================
Job count: 747
Total walltime [h]: 16334
Total node hours [h]: 78966
Histogram: Number of nodes
nodes count
1 54 ****
2 1
3 1
4 36 ****
5 522 *******
6 118 *****
7 15 ***
Histogram: Walltime
hours count
20 250 ******
21 200 ******
22 114 *****
23 183 ******
```
Get job performance statistics:
```
[HPCJobDatabase] ./acQuery.pl --project project_30 --mode perf --duration 0 20h --numnodes 1 4 --starttime 01.08.2018/12:00 01.03.2019/12:00 -- jobDB-anon-emmy
=================================
Job count: 92
Jobs with performance profile: 48
Total walltime [h]: 2070
Total node hours [h]: 4332
Histogram: Mem used
Mem count
2 3 **
3 4 **
18 2 *
19 3 **
20 2 *
21 1
22 2 *
23 5 **
24 2 *
25 1
26 1
27 3 **
29 1
30 2 *
31 1
34 1
35 1
36 1
41 1
42 2 *
43 2 *
44 1
49 1
50 2 *
51 1
52 1
53 1
Histogram: Memory bandwidth
BW count
1 1
2 9 ***
3 1
4 1
5 4 **
6 2 *
7 10 ***
8 9 ***
9 11 ***
Histogram: Flops any
flops count
1 3 **
2 1
3 4 **
4 3 **
5 9 ***
6 10 ***
7 11 ***
85 1
225 1
236 1
240 2 *
244 2 *
```

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acSync.pl
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#!/usr/bin/env perl
# =======================================================================================
#
# Author: Jan Eitzinger (je), jan.eitzinger@fau.de
# Copyright (c) 2019 RRZE, University Erlangen-Nuremberg
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in all
# copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
# SOFTWARE.
#
# =======================================================================================
use strict;
use warnings;
use utf8;
use File::Slurp;
use Data::Dumper;
use JSON::MaybeXS qw(encode_json decode_json);
use DBI;
my $database = $ARGV[0];
my $basedir = $ARGV[1];
my %attr = (
PrintError => 1,
RaiseError => 1
);
my $dbh = DBI->connect(
"DBI:SQLite:dbname=$database", "", "", \%attr)
or die "Could not connect to database: $DBI::errstr";
my $sth_select_job = $dbh->prepare(qq{
SELECT id, user_id, job_id, cluster_id,
start_time, stop_time, duration, num_nodes
FROM job
WHERE job_id=?
});
my $jobcount = 0;
my $wrongjobcount = 0;
opendir my $dh, $basedir or die "can't open directory: $!";
while ( readdir $dh ) {
chomp;
next if $_ eq '.' or $_ eq '..';
my $jobID = $_;
my $needsUpdate = 0;
my $jobmeta_json = read_file("$basedir/$jobID/meta.json");
my $job = decode_json $jobmeta_json;
my @row = $dbh->selectrow_array($sth_select_job, undef, $jobID);
if ( @row ) {
$jobcount++;
# print Dumper(@row);
my $duration_diff = abs($job->{duration} - $row[6]);
if ( $duration_diff > 120 ) {
$needsUpdate = 1;
# print "$jobID DIFF DURATION $duration_diff\n";
# print "CC $row[4] - $row[5]\n";
# print "DB $job->{start_time} - $job->{stop_time}\n"
}
if ( $row[7] != $job->{num_nodes} ){
$needsUpdate = 1;
# print "$jobID DIFF NODES $row[7] $job->{num_nodes}\n";
}
} else {
print "$jobID NOT in DB!\n";
}
if ( $needsUpdate ){
$wrongjobcount++;
print "$jobID\n";
}
}
closedir $dh or die "can't close directory: $!";
$dbh->disconnect;
print "$wrongjobcount of $jobcount need update\n";

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anonDB.pl
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#!/usr/bin/env perl
# =======================================================================================
#
# Author: Jan Eitzinger (je), jan.eitzinger@fau.de
# Copyright (c) 2019 RRZE, University Erlangen-Nuremberg
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in all
# copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
# SOFTWARE.
#
# =======================================================================================
use strict;
use warnings;
use utf8;
use File::Slurp;
use Data::Dumper;
use JSON::MaybeXS qw(encode_json decode_json);
use DBI;
my $database = $ARGV[0];
my $basedir = $ARGV[1];
my %attr = (
PrintError => 1,
RaiseError => 1
);
my $dbh = DBI->connect(
"DBI:SQLite:dbname=$database", "", "", \%attr)
or die "Could not connect to database: $DBI::errstr";
my $sth_select_all = $dbh->prepare(qq{
SELECT id, user_id, project_id
FROM job;
});
my $sth_select_job = $dbh->prepare(qq{
SELECT id, user_id, project_id
FROM job
WHERE job_id=?;
});
my $sth_update_job = $dbh->prepare(qq{
UPDATE job
SET user_id = ?,
project_id = ?
WHERE id=?;
});
my $user_index = 0; my $project_index = 0;
my %user_lookup; my %project_lookup;
my %user_group;
my %row;
# build lookups
$sth_select_all->execute;
$sth_select_all->bind_columns( \( @row{ @{$sth_select_all->{NAME_lc} } } ));
while ($sth_select_all->fetch) {
my $user_id = $row{'user_id'};
my $project_id = $row{'project_id'};
if ( not exists $user_lookup{$user_id}) {
$user_index++;
$user_lookup{$user_id} = $user_index;
$user_group{$user_id} = $project_id;
}
if ( not exists $project_lookup{$project_id}) {
$project_index++;
$project_lookup{$project_id} = $project_index;
}
}
write_file("user-conversion.json", encode_json \%user_lookup);
write_file("project-conversion.json", encode_json \%project_lookup);
print "$user_index total users\n";
print "$project_index total projects\n";
# convert database
$sth_select_all->execute;
$sth_select_all->bind_columns( \( @row{ @{$sth_select_all->{NAME_lc} } } ));
while ($sth_select_all->fetch) {
my $user_id = 'user_'.$user_lookup{$row{'user_id'}};
my $project_id = 'project_'.$project_lookup{$row{'project_id'}};
# print "$row{'id'}: $user_id - $project_id\n";
$sth_update_job->execute(
$user_id,
$project_id,
$row{'id'}
);
}
open(my $fh, '<:encoding(UTF-8)', './jobIds.txt')
or die "Could not open file $!";
# convert job meta file
while ( <$fh> ) {
my $line = $_;
my ($jobID, $path1, $path2) = split ' ', $line;
my $json = read_file("$basedir/$path1/$path2/meta.json");
my $job = decode_json $json;
my $user = $job->{'user_id'};
# if ( $user =~ /^user_.*/ ) {
# print "$jobID $user\n";
# }
my $project;
if ( exists $user_lookup{$user}) {
$project = $user_group{$user};
$user = 'user_'.$user_lookup{$user};
} else {
die "$user not in lookup hash!\n";
}
if ( exists $project_lookup{$project}) {
$project = 'project_'.$project_lookup{$project};
} else {
die "$project not in lookup hash!\n";
}
$job->{user_id} = $user;
$job->{project_id} = $project;
$json = encode_json $job;
write_file("$basedir/$path1/$path2/meta.json", $json);
}
close $fh;
$dbh->disconnect;

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extractJobIDs.pl
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#!/usr/bin/env perl
# =======================================================================================
#
# Author: Jan Eitzinger (je), jan.eitzinger@fau.de
# Copyright (c) 2019 RRZE, University Erlangen-Nuremberg
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in all
# copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
# SOFTWARE.
#
# =======================================================================================
use strict;
use warnings;
use utf8;
my $basedir = $ARGV[0];
open(my $fh, '>:encoding(UTF-8)', 'jobIds.txt')
or die "Could not open file $!";
opendir my $odh, $basedir or die "can't open directory: $!";
my $count = 0;
while ( readdir $odh ) {
chomp;
next if $_ eq '.' or $_ eq '..';
my $jobID1 = $_;
print "Open $jobID1\n";
opendir my $idh, "$basedir/$jobID1" or die "can't open directory: $!";
while ( readdir $idh ) {
chomp;
next if $_ eq '.' or $_ eq '..';
my $jobID2 = $_;
unless (-e "$basedir/$jobID1/$jobID2/data.json") {
print "$basedir/$jobID1/$jobID2/ File Doesn't Exist!\n";
# rmdir "$basedir/$jobID1/$jobID2";
$count++;
} else {
print $fh "$jobID1$jobID2.eadm $jobID1 $jobID2\n";
}
}
closedir $idh or die "can't close directory: $!";
}
closedir $odh or die "can't close directory: $!";
close $fh;
print "$count empty jobs!\n";

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generatePlots.pl
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#!/usr/bin/env perl
use strict;
use warnings;
use utf8;
use File::Slurp;
use Data::Dumper;
use JSON::MaybeXS qw(encode_json decode_json);
my $jobDirectory = '../data';
sub gnuplotControl {
my $jobID = shift;
my $metricName = shift;
my $numNodes = shift;
my $unit = shift;
my $gpMacros = <<"END";
set terminal png size 1400,768 enhanced font ,12
set output '$jobID-$metricName.png'
set xlabel 'runtime [s]'
set ylabel '[$unit]'
END
$gpMacros .= "plot '$metricName.dat' u 2 w lines notitle";
foreach my $col ( 3 ... $numNodes ){
$gpMacros .= ", '$metricName.dat' u $col w lines notitle";
}
open(my $fh, '>:encoding(UTF-8)', './metric.plot')
or die "Could not open file $!";
print $fh $gpMacros;
close $fh;
system('gnuplot','metric.plot');
}
sub createPlot {
my $jobID = shift;
my $metricName = shift;
my $metric = shift;
my $unit = shift;
my @lines;
foreach my $node ( @$metric ) {
my $i = 0;
foreach my $val ( @{$node->{data}} ){
$lines[$i++] .= " $val";
}
}
open(my $fh, '>:encoding(UTF-8)', './'.$metricName.'.dat')
or die "Could not open file $!";
my $timestamp = 0;
foreach my $line ( @lines ) {
print $fh $timestamp.$line."\n";
$timestamp += 60;
}
close $fh;
gnuplotControl($jobID, $metricName, $#$metric + 2, $unit);
}
mkdir('./plots');
chdir('./plots');
while ( <> ) {
my $jobID = $_;
$jobID =~ s/\.eadm//;
chomp $jobID;
my $level1 = $jobID/1000;
my $level2 = $jobID%1000;
my $jobpath = sprintf("%s/%d/%03d", $jobDirectory, $level1, $level2);
my $json = read_file($jobpath.'/data.json');
my $data = decode_json $json;
$json = read_file($jobpath.'/meta.json');
my $meta = decode_json $json;
createPlot($jobID, 'flops_any', $data->{flops_any}->{series}, $data->{flops_any}->{unit});
createPlot($jobID, 'mem_bw', $data->{mem_bw}->{series}, $data->{mem_bw}->{unit});
}

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go.mod Normal file
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module github.com/moebiusband/cc-jobarchive
go 1.15
require (
github.com/99designs/gqlgen v0.13.0
github.com/gorilla/handlers v1.5.1
github.com/gorilla/mux v1.6.1
github.com/jmoiron/sqlx v1.3.1 // indirect
github.com/mattn/go-sqlite3 v1.14.6
github.com/vektah/gqlparser/v2 v2.1.0
)

91
go.sum Normal file
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github.com/99designs/gqlgen v0.13.0 h1:haLTcUp3Vwp80xMVEg5KRNwzfUrgFdRmtBY8fuB8scA=
github.com/99designs/gqlgen v0.13.0/go.mod h1:NV130r6f4tpRWuAI+zsrSdooO/eWUv+Gyyoi3rEfXIk=
github.com/BurntSushi/toml v0.3.1/go.mod h1:xHWCNGjB5oqiDr8zfno3MHue2Ht5sIBksp03qcyfWMU=
github.com/agnivade/levenshtein v1.0.1/go.mod h1:CURSv5d9Uaml+FovSIICkLbAUZ9S4RqaHDIsdSBg7lM=
github.com/agnivade/levenshtein v1.0.3 h1:M5ZnqLOoZR8ygVq0FfkXsNOKzMCk0xRiow0R5+5VkQ0=
github.com/agnivade/levenshtein v1.0.3/go.mod h1:4SFRZbbXWLF4MU1T9Qg0pGgH3Pjs+t6ie5efyrwRJXs=
github.com/andreyvit/diff v0.0.0-20170406064948-c7f18ee00883/go.mod h1:rCTlJbsFo29Kk6CurOXKm700vrz8f0KW0JNfpkRJY/8=
github.com/arbovm/levenshtein v0.0.0-20160628152529-48b4e1c0c4d0/go.mod h1:t2tdKJDJF9BV14lnkjHmOQgcvEKgtqs5a1N3LNdJhGE=
github.com/cpuguy83/go-md2man/v2 v2.0.0-20190314233015-f79a8a8ca69d h1:U+s90UTSYgptZMwQh2aRr3LuazLJIa+Pg3Kc1ylSYVY=
github.com/cpuguy83/go-md2man/v2 v2.0.0-20190314233015-f79a8a8ca69d/go.mod h1:maD7wRr/U5Z6m/iR4s+kqSMx2CaBsrgA7czyZG/E6dU=
github.com/davecgh/go-spew v1.1.0/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38=
github.com/davecgh/go-spew v1.1.1/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38=
github.com/dgryski/trifles v0.0.0-20190318185328-a8d75aae118c/go.mod h1:if7Fbed8SFyPtHLHbg49SI7NAdJiC5WIA09pe59rfAA=
github.com/felixge/httpsnoop v1.0.1 h1:lvB5Jl89CsZtGIWuTcDM1E/vkVs49/Ml7JJe07l8SPQ=
github.com/felixge/httpsnoop v1.0.1/go.mod h1:m8KPJKqk1gH5J9DgRY2ASl2lWCfGKXixSwevea8zH2U=
github.com/go-chi/chi v3.3.2+incompatible/go.mod h1:eB3wogJHnLi3x/kFX2A+IbTBlXxmMeXJVKy9tTv1XzQ=
github.com/go-sql-driver/mysql v1.5.0/go.mod h1:DCzpHaOWr8IXmIStZouvnhqoel9Qv2LBy8hT2VhHyBg=
github.com/gogo/protobuf v1.0.0/go.mod h1:r8qH/GZQm5c6nD/R0oafs1akxWv10x8SbQlK7atdtwQ=
github.com/gorilla/context v0.0.0-20160226214623-1ea25387ff6f/go.mod h1:kBGZzfjB9CEq2AlWe17Uuf7NDRt0dE0s8S51q0aT7Yg=
github.com/gorilla/handlers v1.5.1 h1:9lRY6j8DEeeBT10CvO9hGW0gmky0BprnvDI5vfhUHH4=
github.com/gorilla/handlers v1.5.1/go.mod h1:t8XrUpc4KVXb7HGyJ4/cEnwQiaxrX/hz1Zv/4g96P1Q=
github.com/gorilla/mux v1.6.1 h1:KOwqsTYZdeuMacU7CxjMNYEKeBvLbxW+psodrbcEa3A=
github.com/gorilla/mux v1.6.1/go.mod h1:1lud6UwP+6orDFRuTfBEV8e9/aOM/c4fVVCaMa2zaAs=
github.com/gorilla/websocket v1.4.2 h1:+/TMaTYc4QFitKJxsQ7Yye35DkWvkdLcvGKqM+x0Ufc=
github.com/gorilla/websocket v1.4.2/go.mod h1:YR8l580nyteQvAITg2hZ9XVh4b55+EU/adAjf1fMHhE=
github.com/hashicorp/golang-lru v0.5.0 h1:CL2msUPvZTLb5O648aiLNJw3hnBxN2+1Jq8rCOH9wdo=
github.com/hashicorp/golang-lru v0.5.0/go.mod h1:/m3WP610KZHVQ1SGc6re/UDhFvYD7pJ4Ao+sR/qLZy8=
github.com/jmoiron/sqlx v1.3.1 h1:aLN7YINNZ7cYOPK3QC83dbM6KT0NMqVMw961TqrejlE=
github.com/jmoiron/sqlx v1.3.1/go.mod h1:2BljVx/86SuTyjE+aPYlHCTNvZrnJXghYGpNiXLBMCQ=
github.com/kr/pretty v0.1.0/go.mod h1:dAy3ld7l9f0ibDNOQOHHMYYIIbhfbHSm3C4ZsoJORNo=
github.com/kr/pty v1.1.1/go.mod h1:pFQYn66WHrOpPYNljwOMqo10TkYh1fy3cYio2l3bCsQ=
github.com/kr/text v0.1.0/go.mod h1:4Jbv+DJW3UT/LiOwJeYQe1efqtUx/iVham/4vfdArNI=
github.com/lib/pq v1.2.0/go.mod h1:5WUZQaWbwv1U+lTReE5YruASi9Al49XbQIvNi/34Woo=
github.com/logrusorgru/aurora v0.0.0-20200102142835-e9ef32dff381/go.mod h1:7rIyQOR62GCctdiQpZ/zOJlFyk6y+94wXzv6RNZgaR4=
github.com/matryer/moq v0.0.0-20200106131100-75d0ddfc0007 h1:reVOUXwnhsYv/8UqjvhrMOu5CNT9UapHFLbQ2JcXsmg=
github.com/matryer/moq v0.0.0-20200106131100-75d0ddfc0007/go.mod h1:9ELz6aaclSIGnZBoaSLZ3NAl1VTufbOrXBPvtcy6WiQ=
github.com/mattn/go-colorable v0.1.4/go.mod h1:U0ppj6V5qS13XJ6of8GYAs25YV2eR4EVcfRqFIhoBtE=
github.com/mattn/go-isatty v0.0.8/go.mod h1:Iq45c/XA43vh69/j3iqttzPXn0bhXyGjM0Hdxcsrc5s=
github.com/mattn/go-isatty v0.0.12/go.mod h1:cbi8OIDigv2wuxKPP5vlRcQ1OAZbq2CE4Kysco4FUpU=
github.com/mattn/go-sqlite3 v1.14.4 h1:4rQjbDxdu9fSgI/r3KN72G3c2goxknAqHHgPWWs8UlI=
github.com/mattn/go-sqlite3 v1.14.4/go.mod h1:WVKg1VTActs4Qso6iwGbiFih2UIHo0ENGwNd0Lj+XmI=
github.com/mattn/go-sqlite3 v1.14.6 h1:dNPt6NO46WmLVt2DLNpwczCmdV5boIZ6g/tlDrlRUbg=
github.com/mattn/go-sqlite3 v1.14.6/go.mod h1:NyWgC/yNuGj7Q9rpYnZvas74GogHl5/Z4A/KQRfk6bU=
github.com/mitchellh/mapstructure v0.0.0-20180203102830-a4e142e9c047 h1:zCoDWFD5nrJJVjbXiDZcVhOBSzKn3o9LgRLLMRNuru8=
github.com/mitchellh/mapstructure v0.0.0-20180203102830-a4e142e9c047/go.mod h1:FVVH3fgwuzCH5S8UJGiWEs2h04kUh9fWfEaFds41c1Y=
github.com/opentracing/basictracer-go v1.0.0/go.mod h1:QfBfYuafItcjQuMwinw9GhYKwFXS9KnPs5lxoYwgW74=
github.com/opentracing/opentracing-go v1.0.2/go.mod h1:UkNAQd3GIcIGf0SeVgPpRdFStlNbqXla1AfSYxPUl2o=
github.com/pkg/errors v0.8.1 h1:iURUrRGxPUNPdy5/HRSm+Yj6okJ6UtLINN0Q9M4+h3I=
github.com/pkg/errors v0.8.1/go.mod h1:bwawxfHBFNV+L2hUp1rHADufV3IMtnDRdf1r5NINEl0=
github.com/pmezard/go-difflib v1.0.0/go.mod h1:iKH77koFhYxTK1pcRnkKkqfTogsbg7gZNVY4sRDYZ/4=
github.com/rs/cors v1.6.0/go.mod h1:gFx+x8UowdsKA9AchylcLynDq+nNFfI8FkUZdN/jGCU=
github.com/russross/blackfriday/v2 v2.0.1 h1:lPqVAte+HuHNfhJ/0LC98ESWRz8afy9tM/0RK8m9o+Q=
github.com/russross/blackfriday/v2 v2.0.1/go.mod h1:+Rmxgy9KzJVeS9/2gXHxylqXiyQDYRxCVz55jmeOWTM=
github.com/sergi/go-diff v1.1.0/go.mod h1:STckp+ISIX8hZLjrqAeVduY0gWCT9IjLuqbuNXdaHfM=
github.com/shurcooL/httpfs v0.0.0-20171119174359-809beceb2371/go.mod h1:ZY1cvUeJuFPAdZ/B6v7RHavJWZn2YPVFQ1OSXhCGOkg=
github.com/shurcooL/sanitized_anchor_name v1.0.0 h1:PdmoCO6wvbs+7yrJyMORt4/BmY5IYyJwS/kOiWx8mHo=
github.com/shurcooL/sanitized_anchor_name v1.0.0/go.mod h1:1NzhyTcUVG4SuEtjjoZeVRXNmyL/1OwPU0+IJeTBvfc=
github.com/shurcooL/vfsgen v0.0.0-20180121065927-ffb13db8def0/go.mod h1:TrYk7fJVaAttu97ZZKrO9UbRa8izdowaMIZcxYMbVaw=
github.com/stretchr/objx v0.1.0/go.mod h1:HFkY916IF+rwdDfMAkV7OtwuqBVzrE8GR6GFx+wExME=
github.com/stretchr/testify v1.2.1/go.mod h1:a8OnRcib4nhh0OaRAV+Yts87kKdq0PP7pXfy6kDkUVs=
github.com/stretchr/testify v1.4.0/go.mod h1:j7eGeouHqKxXV5pUuKE4zz7dFj8WfuZ+81PSLYec5m4=
github.com/urfave/cli/v2 v2.1.1 h1:Qt8FeAtxE/vfdrLmR3rxR6JRE0RoVmbXu8+6kZtYU4k=
github.com/urfave/cli/v2 v2.1.1/go.mod h1:SE9GqnLQmjVa0iPEY0f1w3ygNIYcIJ0OKPMoW2caLfQ=
github.com/vektah/dataloaden v0.2.1-0.20190515034641-a19b9a6e7c9e h1:+w0Zm/9gaWpEAyDlU1eKOuk5twTjAjuevXqcJJw8hrg=
github.com/vektah/dataloaden v0.2.1-0.20190515034641-a19b9a6e7c9e/go.mod h1:/HUdMve7rvxZma+2ZELQeNh88+003LL7Pf/CZ089j8U=
github.com/vektah/gqlparser/v2 v2.1.0 h1:uiKJ+T5HMGGQM2kRKQ8Pxw8+Zq9qhhZhz/lieYvCMns=
github.com/vektah/gqlparser/v2 v2.1.0/go.mod h1:SyUiHgLATUR8BiYURfTirrTcGpcE+4XkV2se04Px1Ms=
golang.org/x/crypto v0.0.0-20190308221718-c2843e01d9a2/go.mod h1:djNgcEr1/C05ACkg1iLfiJU5Ep61QUkGW8qpdssI0+w=
golang.org/x/crypto v0.0.0-20191011191535-87dc89f01550/go.mod h1:yigFU9vqHzYiE8UmvKecakEJjdnWj3jj499lnFckfCI=
golang.org/x/mod v0.1.1-0.20191105210325-c90efee705ee/go.mod h1:QqPTAvyqsEbceGzBzNggFXnrqF1CaUcvgkdR5Ot7KZg=
golang.org/x/net v0.0.0-20190311183353-d8887717615a/go.mod h1:t9HGtf8HONx5eT2rtn7q6eTqICYqUVnKs3thJo3Qplg=
golang.org/x/net v0.0.0-20190404232315-eb5bcb51f2a3/go.mod h1:t9HGtf8HONx5eT2rtn7q6eTqICYqUVnKs3thJo3Qplg=
golang.org/x/net v0.0.0-20190620200207-3b0461eec859/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s=
golang.org/x/sync v0.0.0-20190423024810-112230192c58/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
golang.org/x/sys v0.0.0-20190215142949-d0b11bdaac8a/go.mod h1:STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY=
golang.org/x/sys v0.0.0-20190222072716-a9d3bda3a223/go.mod h1:STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY=
golang.org/x/sys v0.0.0-20190412213103-97732733099d/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
golang.org/x/sys v0.0.0-20200116001909-b77594299b42/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
golang.org/x/text v0.3.0/go.mod h1:NqM8EUOU14njkJ3fqMW+pc6Ldnwhi/IjpwHt7yyuwOQ=
golang.org/x/tools v0.0.0-20190125232054-d66bd3c5d5a6/go.mod h1:n7NCudcB/nEzxVGmLbDWY5pfWTLqBcC2KZ6jyYvM4mQ=
golang.org/x/tools v0.0.0-20190515012406-7d7faa4812bd/go.mod h1:RgjU9mgBXZiqYHBnxXauZ1Gv1EHHAz9KjViQ78xBX0Q=
golang.org/x/tools v0.0.0-20200114235610-7ae403b6b589 h1:rjUrONFu4kLchcZTfp3/96bR8bW8dIa8uz3cR5n0cgM=
golang.org/x/tools v0.0.0-20200114235610-7ae403b6b589/go.mod h1:TB2adYChydJhpapKDTa4BR/hXlZSLoq2Wpct/0txZ28=
golang.org/x/xerrors v0.0.0-20191011141410-1b5146add898/go.mod h1:I/5z698sn9Ka8TeJc9MKroUUfqBBauWjQqLJ2OPfmY0=
gopkg.in/check.v1 v0.0.0-20161208181325-20d25e280405/go.mod h1:Co6ibVJAznAaIkqp8huTwlJQCZ016jof/cbN4VW5Yz0=
gopkg.in/check.v1 v1.0.0-20190902080502-41f04d3bba15/go.mod h1:Co6ibVJAznAaIkqp8huTwlJQCZ016jof/cbN4VW5Yz0=
gopkg.in/yaml.v2 v2.2.2/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI=
gopkg.in/yaml.v2 v2.2.4 h1:/eiJrUcujPVeJ3xlSWaiNi3uSVmDGBK1pDHUHAnao1I=
gopkg.in/yaml.v2 v2.2.4/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI=
sourcegraph.com/sourcegraph/appdash v0.0.0-20180110180208-2cc67fd64755/go.mod h1:hI742Nqp5OhwiqlzhgfbWU4mW4yO10fP+LoT9WOswdU=
sourcegraph.com/sourcegraph/appdash-data v0.0.0-20151005221446-73f23eafcf67/go.mod h1:L5q+DGLGOQFpo1snNEkLOJT2d1YTW66rWNzatr3He1k=

60
gqlgen.yml Normal file
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# Where are all the schema files located? globs are supported eg src/**/*.graphqls
schema:
- graph/*.graphqls
# Where should the generated server code go?
exec:
filename: graph/generated/generated.go
package: generated
# Uncomment to enable federation
# federation:
# filename: graph/generated/federation.go
# package: generated
# Where should any generated models go?
model:
filename: graph/model/models_gen.go
package: model
# Where should the resolver implementations go?
resolver:
layout: follow-schema
dir: graph
package: graph
# Optional: turn on use `gqlgen:"fieldName"` tags in your models
# struct_tag: json
# Optional: turn on to use []Thing instead of []*Thing
# omit_slice_element_pointers: false
# Optional: set to speed up generation time by not performing a final validation pass.
# skip_validation: true
# gqlgen will search for any type names in the schema in these go packages
# if they match it will use them, otherwise it will generate them.
autobind:
- "fossil.moebiusband.org/jobaccounting-backend/graph/model"
# This section declares type mapping between the GraphQL and go type systems
#
# The first line in each type will be used as defaults for resolver arguments and
# modelgen, the others will be allowed when binding to fields. Configure them to
# your liking
models:
ID:
model:
- github.com/99designs/gqlgen/graphql.ID
- github.com/99designs/gqlgen/graphql.Int
- github.com/99designs/gqlgen/graphql.Int64
- github.com/99designs/gqlgen/graphql.Int32
Int:
model:
- github.com/99designs/gqlgen/graphql.Int
- github.com/99designs/gqlgen/graphql.Int64
- github.com/99designs/gqlgen/graphql.Int32
Job:
model: "fossil.moebiusband.org/jobaccounting-backend/graph/model.Job"
Timestamp:
model: "fossil.moebiusband.org/jobaccounting-backend/graph/model.Timestamp"

25
graph/model/models.go Normal file
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@ -0,0 +1,25 @@
package model
import (
"time"
)
type Job struct {
ID string `json:"id"`
JobID string `json:"jobId" db:"job_id"`
UserID string `json:"userId" db:"user_id"`
ProjectID string `json:"projectId" db:"project_id"`
ClusterID string `json:"clusterId" db:"cluster_id"`
StartTime time.Time `json:"startTime" db:"start_time"`
Duration int `json:"duration" db:"duration"`
Walltime *int `json:"walltime" db:"walltime"`
Jobstate *string `json:"jobstate" db:"job_state"`
NumNodes int `json:"numNodes" db:"num_nodes"`
NodeList string `json:"nodelist" db:"node_list"`
HasProfile bool `json:"hasProfile" db:"has_profile"`
MemUsed_max *float64 `json:"memUsedMax" db:"mem_used_max"`
FlopsAny_avg *float64 `json:"flopsAnyAvg" db:"flops_any_avg"`
MemBw_avg *float64 `json:"memBwAvg" db:"mem_bw_avg"`
NetBw_avg *float64 `json:"netBwAvg" db:"net_bw_avg"`
FileBw_avg *float64 `json:"fileBwAvg" db:"file_bw_avg"`
}

248
graph/resolver.go Normal file
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package graph
//go:generate go run github.com/99designs/gqlgen
import (
"context"
"fmt"
"log"
"strings"
"fossil.moebiusband.org/jobaccounting-backend/graph/generated"
"fossil.moebiusband.org/jobaccounting-backend/graph/model"
"github.com/jmoiron/sqlx"
)
type Resolver struct {
DB *sqlx.DB
}
func NewRootResolvers(db *sqlx.DB) generated.Config {
c := generated.Config{
Resolvers: &Resolver{
DB: db,
},
}
return c
}
// Helper functions
func addStringCondition(conditions []string, field string, input *model.StringInput) []string {
if input.Eq != nil {
conditions = append(conditions, fmt.Sprintf("%s='%s'", field, *input.Eq))
}
if input.StartsWith != nil {
conditions = append(conditions, fmt.Sprintf("%s LIKE '%s%%'", field, *input.StartsWith))
}
if input.Contains != nil {
conditions = append(conditions, fmt.Sprintf("%s LIKE '%%%s%%'", field, *input.Contains))
}
if input.EndsWith != nil {
conditions = append(conditions, fmt.Sprintf("%s LIKE '%%%s'", field, *input.EndsWith))
}
return conditions
}
func addIntCondition(conditions []string, field string, input *model.IntRange) []string {
conditions = append(conditions, fmt.Sprintf("%s BETWEEN %d AND %d", field, input.From, input.To))
return conditions
}
func addTimeCondition(conditions []string, field string, input *model.TimeRange) []string {
conditions = append(conditions, fmt.Sprintf("%s BETWEEN %d AND %d", field, input.From.Unix(), input.To.Unix()))
return conditions
}
func buildQueryConditions(filterList *model.JobFilterList) string {
var conditions []string
for _, condition := range filterList.List {
if condition.JobID != nil {
conditions = addStringCondition(conditions, `job_id`, condition.JobID)
}
if condition.UserID != nil {
conditions = addStringCondition(conditions, `user_id`, condition.UserID)
}
if condition.ProjectID != nil {
conditions = addStringCondition(conditions, `project_id`, condition.ProjectID)
}
if condition.ClusterID != nil {
conditions = addStringCondition(conditions, `cluster_id`, condition.ClusterID)
}
if condition.StartTime != nil {
conditions = addTimeCondition(conditions, `start_time`, condition.StartTime)
}
if condition.Duration != nil {
conditions = addIntCondition(conditions, `duration`, condition.Duration)
}
if condition.NumNodes != nil {
conditions = addIntCondition(conditions, `num_nodes`, condition.NumNodes)
}
}
return strings.Join(conditions, " AND ")
}
// Queries
func (r *queryResolver) JobByID(
ctx context.Context,
jobID string) (*model.Job, error) {
var job model.Job
qstr := `SELECT * from job `
qstr += fmt.Sprintf("WHERE id=%s", jobID)
row := r.DB.QueryRowx(qstr)
err := row.StructScan(&job)
if err != nil {
return nil, err
}
return &job, nil
}
func (r *queryResolver) Jobs(
ctx context.Context,
filterList *model.JobFilterList,
page *model.PageRequest,
orderBy *model.OrderByInput) (*model.JobResultList, error) {
var jobs []*model.Job
var limit, offset int
var qc, ob string
if page != nil {
limit = *page.Limit
offset = *page.Offset
} else {
limit = 20
offset = 0
}
if filterList != nil {
qc = buildQueryConditions(filterList)
if qc != "" {
qc = `WHERE ` + qc
}
}
if orderBy != nil {
ob = fmt.Sprintf("ORDER BY %s %s", orderBy.Field, *orderBy.Order)
}
qstr := `SELECT * `
qstr += fmt.Sprintf("FROM job %s %s LIMIT %d OFFSET %d", qc, ob, limit, offset)
log.Printf("%s", qstr)
rows, err := r.DB.Queryx(qstr)
if err != nil {
return nil, err
}
defer rows.Close()
for rows.Next() {
var job model.Job
err := rows.StructScan(&job)
if err != nil {
fmt.Println(err)
}
jobs = append(jobs, &job)
}
var count int
qstr = fmt.Sprintf("SELECT COUNT(*) FROM job %s", qc)
row := r.DB.QueryRow(qstr)
err = row.Scan(&count)
if err != nil {
return nil, err
}
returnValue := model.JobResultList{
jobs,
&offset, &limit,
&count}
return &returnValue, nil
}
func (r *queryResolver) JobsStatistics(
ctx context.Context,
filterList *model.JobFilterList) (*model.JobsStatistics, error) {
var qc string
if filterList != nil {
qc = buildQueryConditions(filterList)
if qc != "" {
qc = `WHERE ` + qc
}
}
// TODO Change current node hours to core hours
qstr := `SELECT COUNT(*), SUM(duration)/3600, SUM(duration*num_nodes)/3600 `
qstr += fmt.Sprintf("FROM job %s ", qc)
log.Printf("%s", qstr)
var stats model.JobsStatistics
row := r.DB.QueryRow(qstr)
err := row.Scan(&stats.TotalJobs, &stats.TotalWalltime, &stats.TotalCoreHours)
if err != nil {
return nil, err
}
qstr = `SELECT COUNT(*) `
qstr += fmt.Sprintf("FROM job %s AND duration < 120", qc)
log.Printf("%s", qstr)
row = r.DB.QueryRow(qstr)
err = row.Scan(&stats.ShortJobs)
if err != nil {
return nil, err
}
var histogram []*model.HistoPoint
// Node histogram
qstr = `SELECT num_nodes, COUNT(*) `
qstr += fmt.Sprintf("FROM job %s GROUP BY 1", qc)
log.Printf("%s", qstr)
rows, err := r.DB.Query(qstr)
if err != nil {
return nil, err
}
defer rows.Close()
for rows.Next() {
var point model.HistoPoint
rows.Scan(&point.Count, &point.Value)
histogram = append(histogram, &point)
}
stats.HistNumNodes = histogram
// Node histogram
qstr = `SELECT duration/3600, COUNT(*) `
qstr += fmt.Sprintf("FROM job %s GROUP BY 1", qc)
log.Printf("%s", qstr)
rows, err = r.DB.Query(qstr)
if err != nil {
return nil, err
}
defer rows.Close()
histogram = nil
for rows.Next() {
var point model.HistoPoint
rows.Scan(&point.Count, &point.Value)
histogram = append(histogram, &point)
}
stats.HistWalltime = histogram
return &stats, nil
}
func (r *Resolver) Query() generated.QueryResolver { return &queryResolver{r} }
type queryResolver struct{ *Resolver }

121
graph/schema.graphqls Normal file
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@ -0,0 +1,121 @@
type Job {
id: ID!
jobId: String!
userId: String!
projectId: String!
clusterId: String!
startTime: Time!
duration: Int!
numNodes: Int!
}
type Query {
jobById(jobId: String!): Job
jobs(filter: JobFilterList, page: PageRequest, order: OrderByInput): JobResultList!
jobsStatistics(filter: JobFilterList): JobsStatistics!
}
type Mutation {
startJob(input: StartJobInput!): Job!
stopJob(input: StopJobInput!): Job!
addJob(input: AddJobInput!): Job!
}
input StartJobInput {
jobId: String!
userId: String!
projectId: String!
clusterId: String!
startTime: Time!
numNodes: Int!
}
input StopJobInput {
stopTime: Time!
}
input AddJobInput {
jobId: String!
userId: String!
projectId: String!
clusterId: String!
startTime: Time!
duration: Int!
numNodes: Int!
}
input JobFilterList {
list: [JobFilter]
}
input JobFilter {
jobId: StringInput
userId: StringInput
projectId: StringInput
clusterId: StringInput
duration: IntRange
numNodes: IntRange
startTime: TimeRange
hasProfile: Boolean
}
input OrderByInput {
field: String!
order: SortDirectionEnum = ASC
}
enum SortDirectionEnum {
DESC
ASC
}
input StringInput {
eq: String
contains: String
startsWith: String
endsWith: String
}
input IntRange {
from: Int!
to: Int!
}
input FloatRange {
from: Float!
to: Float!
}
input TimeRange {
from: Time!
to: Time!
}
type JobResultList {
items: [Job]!
offset: Int
limit: Int
count: Int
}
type HistoPoint {
count: Int!
value: Int!
}
type JobsStatistics {
totalJobs: Int!
shortJobs: Int!
totalWalltime: Int!
totalCoreHours: Int!
histWalltime: [HistoPoint]!
histNumNodes: [HistoPoint]!
}
input PageRequest {
itensPerPage: Int
page: Int
}
scalar Time

4
graph/schema.resolvers.go Normal file
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@ -0,0 +1,4 @@
package graph
// This file will be automatically regenerated based on the schema, any resolver implementations
// will be copied through when generating and any unknown code will be moved to the end.

141
jobTag.pl
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@ -1,141 +0,0 @@
#!/usr/bin/env perl
# =======================================================================================
#
# Author: Jan Eitzinger (je), jan.eitzinger@fau.de
# Copyright (c) 2019 RRZE, University Erlangen-Nuremberg
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in all
# copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
# SOFTWARE.
#
# =======================================================================================
use strict;
use warnings;
use utf8;
use DBI;
my $database = 'jobDB';
my %attr = (
PrintError => 1,
RaiseError => 1
);
my $dbh = DBI->connect(
"DBI:SQLite:dbname=$database", "", "", \%attr)
or die "Could not connect to database: $DBI::errstr";
my $sth_select_tagged_jobs = $dbh->prepare(qq{
SELECT j.*
FROM job j
JOIN jobtag jt ON j.id = jt.job_id
JOIN tag t ON jt.tag_id = t.id
WHERE t.name = ?
});
my $sth_select_job_tags = $dbh->prepare(qq{
SELECT t.*
FROM tag t
JOIN jobtag jt ON t.id = jt.tag_id
JOIN job j ON jt.job_id = j.id
WHERE j.job_id = ?
});
my $sth_select_job = $dbh->prepare(qq{
SELECT id
FROM job
WHERE job_id=?
});
my $sth_select_tag = $dbh->prepare(qq{
SELECT id
FROM tag
WHERE name=?
});
my $sth_insert_tag = $dbh->prepare(qq{
INSERT INTO tag(type,name)
VALUES(?,?)
});
my $sth_job_add_tag = $dbh->prepare(qq{
INSERT INTO jobtag(job_id,tag_id)
VALUES(?,?)
});
my $sth_job_has_tag = $dbh->prepare(qq{
SELECT id FROM job
WHERE job_id=? AND tag_id=?
});
my $CMD = $ARGV[0];
my $JOB_ID = $ARGV[1];
my $TAG_NAME = $ARGV[2];
my ($jid, $tid);
# check if job exists
my @row = $dbh->selectrow_array($sth_select_job, undef, $JOB_ID);
if ( @row ) {
$jid = $row[0];
} else {
die "Job does not exist: $JOB_ID!\n";
}
# check if tag already exists
@row = $dbh->selectrow_array($sth_select_tag, undef, $TAG_NAME);
if ( @row ) {
$tid = $row[0];
} else {
print "Insert new tag: $TAG_NAME!\n";
$sth_insert_tag->execute('pathologic', $TAG_NAME);
}
if ( $CMD eq 'ADD' ) {
@row = $dbh->selectrow_array($sth_job_has_tag, undef, $jid, $tid);
if ( @row ) {
die "Job already tagged!\n";
} else {
print "Adding tag $TAG_NAME to job $JOB_ID!\n";
$sth_job_add_tag($jid, $tid);
}
}
elsif ( $CMD eq 'RM' ) {
# elsif...
}
elsif ( $CMD eq 'LST' ) {
$sth_select_job_tags->execute;
my ($id, $type, $name);
while(($id,$type,$name) = $sth->fetchrow()){
print("$id, $type, $name\n");
}
$sth_select_job_tags->finish();
}
elsif ( $CMD eq 'LSJ' ) {
# elsif...
}
else {
die "Unknown command: $CMD!\n";
}
$dbh->disconnect();

78
jobTagger/Makefile
View File

@ -1,78 +0,0 @@
#=======================================================================================
#
# Author: Jan Eitzinger (je), jan.eitzinger@fau.de
# Copyright (c) 2019 RRZE, University Erlangen-Nuremberg
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in all
# copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
# SOFTWARE.
#
#=======================================================================================
TAG = CLANG
#CONFIGURE BUILD SYSTEM
TARGET = jobTagger-$(TAG)
BUILD_DIR = ./$(TAG)
SRC_DIR = ./src
MAKE_DIR = ./
Q ?= @
#DO NOT EDIT BELOW
include $(MAKE_DIR)/include_$(TAG).mk
VPATH = $(SRC_DIR)
ASM = $(patsubst $(SRC_DIR)/%.c, $(BUILD_DIR)/%.s,$(wildcard $(SRC_DIR)/*.c))
OBJ = $(patsubst $(SRC_DIR)/%.c, $(BUILD_DIR)/%.o,$(wildcard $(SRC_DIR)/*.c))
CPPFLAGS := $(CPPFLAGS) $(DEFINES) $(OPTIONS) $(INCLUDES)
${TARGET}: $(BUILD_DIR) $(OBJ)
@echo "===> LINKING $(TARGET)"
$(Q)${LINKER} ${LFLAGS} -o $(TARGET) $(OBJ) $(LIBS)
asm: $(BUILD_DIR) $(ASM)
$(BUILD_DIR)/%.o: %.c
@echo "===> COMPILE $@"
$(CC) -c $(CPPFLAGS) $(CFLAGS) $< -o $@
$(Q)$(GCC) $(CPPFLAGS) -MT $(@:.d=.o) -MM $< > $(BUILD_DIR)/$*.d
$(BUILD_DIR)/%.s: %.c
@echo "===> GENERATE ASM $@"
$(CC) -S $(CPPFLAGS) $(CFLAGS) $< -o $@
tags:
@echo "===> GENERATE TAGS"
$(Q)ctags -R
$(BUILD_DIR):
@mkdir $(BUILD_DIR)
ifeq ($(findstring $(MAKECMDGOALS),clean),)
-include $(OBJ:.o=.d)
endif
.PHONY: clean distclean
clean:
@echo "===> CLEAN"
@rm -rf $(BUILD_DIR)
@rm -f tags
distclean: clean
@echo "===> DIST CLEAN"
@rm -f $(TARGET)
@rm -f tags

10
jobTagger/include_CLANG.mk
View File

@ -1,10 +0,0 @@
CC = clang
GCC = gcc
LINKER = $(CC)
OPENMP = -fopenmp
CFLAGS = -Ofast -std=c99 $(OPENMP)
LFLAGS = $(OPENMP)
DEFINES = -D_GNU_SOURCE -DJSMN_PARENT_LINKS
INCLUDES =
LIBS =

13
jobTagger/include_GCC.mk
View File

@ -1,13 +0,0 @@
CC = gcc
GCC = gcc
LINKER = $(CC)
ifeq ($(ENABLE_OPENMP),true)
OPENMP = -fopenmp
endif
CFLAGS = -Ofast -ffreestanding -std=c99 $(OPENMP)
LFLAGS = $(OPENMP)
DEFINES = -D_GNU_SOURCE
INCLUDES =
LIBS =

13
jobTagger/include_ICC.mk
View File

@ -1,13 +0,0 @@
CC = icc
GCC = gcc
LINKER = $(CC)
ifeq ($(ENABLE_OPENMP),true)
OPENMP = -qopenmp
endif
CFLAGS = -qopt-report -Ofast -xHost -std=c99 -ffreestanding $(OPENMP)
LFLAGS = $(OPENMP)
DEFINES = -D_GNU_SOURCE
INCLUDES =
LIBS =

88
jobTagger/src/affinity.c
View File

@ -1,88 +0,0 @@
/*
* =======================================================================================
*
* Author: Jan Eitzinger (je), jan.eitzinger@fau.de
* Copyright (c) 2019 RRZE, University Erlangen-Nuremberg
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in all
* copies or substantial portions of the Software.
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
* SOFTWARE.
*
* =======================================================================================
*/
#ifdef __linux__
#ifdef _OPENMP
#include <stdlib.h>
#include <stdio.h>
#include <sched.h>
#include <unistd.h>
#include <sys/types.h>
#include <pthread.h>
#include <sys/syscall.h>
#define MAX_NUM_THREADS 128
#define gettid() syscall(SYS_gettid)
static int
getProcessorID(cpu_set_t* cpu_set)
{
int processorId;
for ( processorId = 0; processorId < MAX_NUM_THREADS; processorId++ )
{
if ( CPU_ISSET(processorId,cpu_set) )
{
break;
}
}
return processorId;
}
int
affinity_getProcessorId()
{
cpu_set_t cpu_set;
CPU_ZERO(&cpu_set);
sched_getaffinity(gettid(),sizeof(cpu_set_t), &cpu_set);
return getProcessorID(&cpu_set);
}
void
affinity_pinThread(int processorId)
{
cpu_set_t cpuset;
pthread_t thread;
thread = pthread_self();
CPU_ZERO(&cpuset);
CPU_SET(processorId, &cpuset);
pthread_setaffinity_np(thread, sizeof(cpu_set_t), &cpuset);
}
void
affinity_pinProcess(int processorId)
{
cpu_set_t cpuset;
CPU_ZERO(&cpuset);
CPU_SET(processorId, &cpuset);
sched_setaffinity(0, sizeof(cpu_set_t), &cpuset);
}
#endif /*_OPENMP*/
#endif /*__linux__*/

35
jobTagger/src/affinity.h
View File

@ -1,35 +0,0 @@
/*
* =======================================================================================
*
* Author: Jan Eitzinger (je), jan.eitzinger@fau.de
* Copyright (c) 2019 RRZE, University Erlangen-Nuremberg
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in all
* copies or substantial portions of the Software.
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
* SOFTWARE.
*
* =======================================================================================
*/
#ifndef AFFINITY_H
#define AFFINITY_H
extern int affinity_getProcessorId();
extern void affinity_pinProcess(int);
extern void affinity_pinThread(int);
#endif /*AFFINITY_H*/

58
jobTagger/src/allocate.c
View File

@ -1,58 +0,0 @@
/*
* =======================================================================================
*
* Author: Jan Eitzinger (je), jan.eitzinger@fau.de
* Copyright (c) 2019 RRZE, University Erlangen-Nuremberg
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in all
* copies or substantial portions of the Software.
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
* SOFTWARE.
*
* =======================================================================================
*/
#include <stdlib.h>
#include <stdio.h>
#include <errno.h>
void* allocate (int alignment, size_t bytesize)
{
int errorCode;
void* ptr;
errorCode = posix_memalign(&ptr, alignment, bytesize);
if (errorCode) {
if (errorCode == EINVAL) {
fprintf(stderr,
"Error: Alignment parameter is not a power of two\n");
exit(EXIT_FAILURE);
}
if (errorCode == ENOMEM) {
fprintf(stderr,
"Error: Insufficient memory to fulfill the request\n");
exit(EXIT_FAILURE);
}
}
if (ptr == NULL) {
fprintf(stderr, "Error: posix_memalign failed!\n");
exit(EXIT_FAILURE);
}
return ptr;
}

33
jobTagger/src/allocate.h
View File

@ -1,33 +0,0 @@
/*
* =======================================================================================
*
* Author: Jan Eitzinger (je), jan.eitzinger@fau.de
* Copyright (c) 2019 RRZE, University Erlangen-Nuremberg
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in all
* copies or substantial portions of the Software.
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
* SOFTWARE.
*
* =======================================================================================
*/
#ifndef __ALLOCATE_H_
#define __ALLOCATE_H_
extern void* allocate (int alignment, size_t bytesize);
#endif

468
jobTagger/src/jsmn.h
View File

@ -1,468 +0,0 @@
/*
* MIT License
*
* Copyright (c) 2010 Serge Zaitsev
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
* SOFTWARE.
*/
#ifndef JSMN_H
#define JSMN_H
#include <stddef.h>
#ifdef __cplusplus
extern "C" {
#endif
#ifdef JSMN_STATIC
#define JSMN_API static
#else
#define JSMN_API extern
#endif
/**
* JSON type identifier. Basic types are:
* o Object
* o Array
* o String
* o Other primitive: number, boolean (true/false) or null
*/
typedef enum {
JSMN_UNDEFINED = 0,
JSMN_OBJECT = 1,
JSMN_ARRAY = 2,
JSMN_STRING = 3,
JSMN_PRIMITIVE = 4
} jsmntype_t;
enum jsmnerr {
/* Not enough tokens were provided */
JSMN_ERROR_NOMEM = -1,
/* Invalid character inside JSON string */
JSMN_ERROR_INVAL = -2,
/* The string is not a full JSON packet, more bytes expected */
JSMN_ERROR_PART = -3
};
/**
* JSON token description.
* type type (object, array, string etc.)
* start start position in JSON data string
* end end position in JSON data string
*/
typedef struct {
jsmntype_t type;
int start;
int end;
int size;
#ifdef JSMN_PARENT_LINKS
int parent;
#endif
} jsmntok_t;
/**
* JSON parser. Contains an array of token blocks available. Also stores
* the string being parsed now and current position in that string.
*/
typedef struct {
unsigned int pos; /* offset in the JSON string */
unsigned int toknext; /* next token to allocate */
int toksuper; /* superior token node, e.g. parent object or array */
} jsmn_parser;
/**
* Create JSON parser over an array of tokens
*/
JSMN_API void jsmn_init(jsmn_parser *parser);
/**
* Run JSON parser. It parses a JSON data string into and array of tokens, each
* describing
* a single JSON object.
*/
JSMN_API int jsmn_parse(jsmn_parser *parser, const char *js, const size_t len,
jsmntok_t *tokens, const unsigned int num_tokens);
#ifndef JSMN_HEADER
/**
* Allocates a fresh unused token from the token pool.
*/
static jsmntok_t *jsmn_alloc_token(jsmn_parser *parser, jsmntok_t *tokens,
const size_t num_tokens) {
jsmntok_t *tok;
if (parser->toknext >= num_tokens) {
return NULL;
}
tok = &tokens[parser->toknext++];
tok->start = tok->end = -1;
tok->size = 0;
#ifdef JSMN_PARENT_LINKS
tok->parent = -1;
#endif
return tok;
}
/**
* Fills token type and boundaries.
*/
static void jsmn_fill_token(jsmntok_t *token, const jsmntype_t type,
const int start, const int end) {
token->type = type;
token->start = start;
token->end = end;
token->size = 0;
}
/**
* Fills next available token with JSON primitive.
*/
static int jsmn_parse_primitive(jsmn_parser *parser, const char *js,
const size_t len, jsmntok_t *tokens,
const size_t num_tokens) {
jsmntok_t *token;
int start;
start = parser->pos;
for (; parser->pos < len && js[parser->pos] != '\0'; parser->pos++) {
switch (js[parser->pos]) {
#ifndef JSMN_STRICT
/* In strict mode primitive must be followed by "," or "}" or "]" */
case ':':
#endif
case '\t':
case '\r':
case '\n':
case ' ':
case ',':
case ']':
case '}':
goto found;
}
if (js[parser->pos] < 32 || js[parser->pos] >= 127) {
parser->pos = start;
return JSMN_ERROR_INVAL;
}
}
#ifdef JSMN_STRICT
/* In strict mode primitive must be followed by a comma/object/array */
parser->pos = start;
return JSMN_ERROR_PART;
#endif
found:
if (tokens == NULL) {
parser->pos--;
return 0;
}
token = jsmn_alloc_token(parser, tokens, num_tokens);
if (token == NULL) {
parser->pos = start;
return JSMN_ERROR_NOMEM;
}
jsmn_fill_token(token, JSMN_PRIMITIVE, start, parser->pos);
#ifdef JSMN_PARENT_LINKS
token->parent = parser->toksuper;
#endif
parser->pos--;
return 0;
}
/**
* Fills next token with JSON string.
*/
static int jsmn_parse_string(jsmn_parser *parser, const char *js,
const size_t len, jsmntok_t *tokens,
const size_t num_tokens) {
jsmntok_t *token;
int start = parser->pos;
parser->pos++;
/* Skip starting quote */
for (; parser->pos < len && js[parser->pos] != '\0'; parser->pos++) {
char c = js[parser->pos];
/* Quote: end of string */
if (c == '\"') {
if (tokens == NULL) {
return 0;
}
token = jsmn_alloc_token(parser, tokens, num_tokens);
if (token == NULL) {
parser->pos = start;
return JSMN_ERROR_NOMEM;
}
jsmn_fill_token(token, JSMN_STRING, start + 1, parser->pos);
#ifdef JSMN_PARENT_LINKS
token->parent = parser->toksuper;
#endif
return 0;
}
/* Backslash: Quoted symbol expected */
if (c == '\\' && parser->pos + 1 < len) {
int i;
parser->pos++;
switch (js[parser->pos]) {
/* Allowed escaped symbols */
case '\"':
case '/':
case '\\':
case 'b':
case 'f':
case 'r':
case 'n':
case 't':
break;
/* Allows escaped symbol \uXXXX */
case 'u':
parser->pos++;
for (i = 0; i < 4 && parser->pos < len && js[parser->pos] != '\0';
i++) {
/* If it isn't a hex character we have an error */
if (!((js[parser->pos] >= 48 && js[parser->pos] <= 57) || /* 0-9 */
(js[parser->pos] >= 65 && js[parser->pos] <= 70) || /* A-F */
(js[parser->pos] >= 97 && js[parser->pos] <= 102))) { /* a-f */
parser->pos = start;
return JSMN_ERROR_INVAL;
}
parser->pos++;
}
parser->pos--;
break;
/* Unexpected symbol */
default:
parser->pos = start;
return JSMN_ERROR_INVAL;
}
}
}
parser->pos = start;
return JSMN_ERROR_PART;
}
/**
* Parse JSON string and fill tokens.
*/
JSMN_API int jsmn_parse(jsmn_parser *parser, const char *js, const size_t len,
jsmntok_t *tokens, const unsigned int num_tokens) {
int r;
int i;
jsmntok_t *token;
int count = parser->toknext;
for (; parser->pos < len && js[parser->pos] != '\0'; parser->pos++) {
char c;
jsmntype_t type;
c = js[parser->pos];
switch (c) {
case '{':
case '[':
count++;
if (tokens == NULL) {
break;
}
token = jsmn_alloc_token(parser, tokens, num_tokens);
if (token == NULL) {
return JSMN_ERROR_NOMEM;
}
if (parser->toksuper != -1) {
jsmntok_t *t = &tokens[parser->toksuper];
#ifdef JSMN_STRICT
/* In strict mode an object or array can't become a key */
if (t->type == JSMN_OBJECT) {
return JSMN_ERROR_INVAL;
}
#endif
t->size++;
#ifdef JSMN_PARENT_LINKS
token->parent = parser->toksuper;
#endif
}
token->type = (c == '{' ? JSMN_OBJECT : JSMN_ARRAY);
token->start = parser->pos;
parser->toksuper = parser->toknext - 1;
break;
case '}':
case ']':
if (tokens == NULL) {
break;
}
type = (c == '}' ? JSMN_OBJECT : JSMN_ARRAY);
#ifdef JSMN_PARENT_LINKS
if (parser->toknext < 1) {
return JSMN_ERROR_INVAL;
}
token = &tokens[parser->toknext - 1];
for (;;) {
if (token->start != -1 && token->end == -1) {
if (token->type != type) {
return JSMN_ERROR_INVAL;
}
token->end = parser->pos + 1;
parser->toksuper = token->parent;
break;
}
if (token->parent == -1) {
if (token->type != type || parser->toksuper == -1) {
return JSMN_ERROR_INVAL;
}
break;
}
token = &tokens[token->parent];
}
#else
for (i = parser->toknext - 1; i >= 0; i--) {
token = &tokens[i];
if (token->start != -1 && token->end == -1) {
if (token->type != type) {
return JSMN_ERROR_INVAL;
}
parser->toksuper = -1;
token->end = parser->pos + 1;
break;
}
}
/* Error if unmatched closing bracket */
if (i == -1) {
return JSMN_ERROR_INVAL;
}
for (; i >= 0; i--) {
token = &tokens[i];
if (token->start != -1 && token->end == -1) {
parser->toksuper = i;
break;
}
}
#endif
break;
case '\"':
r = jsmn_parse_string(parser, js, len, tokens, num_tokens);
if (r < 0) {
return r;
}
count++;
if (parser->toksuper != -1 && tokens != NULL) {
tokens[parser->toksuper].size++;
}
break;
case '\t':
case '\r':
case '\n':
case ' ':
break;
case ':':
parser->toksuper = parser->toknext - 1;
break;
case ',':
if (tokens != NULL && parser->toksuper != -1 &&
tokens[parser->toksuper].type != JSMN_ARRAY &&
tokens[parser->toksuper].type != JSMN_OBJECT) {
#ifdef JSMN_PARENT_LINKS
parser->toksuper = tokens[parser->toksuper].parent;
#else
for (i = parser->toknext - 1; i >= 0; i--) {
if (tokens[i].type == JSMN_ARRAY || tokens[i].type == JSMN_OBJECT) {
if (tokens[i].start != -1 && tokens[i].end == -1) {
parser->toksuper = i;
break;
}
}
}
#endif
}
break;
#ifdef JSMN_STRICT
/* In strict mode primitives are: numbers and booleans */
case '-':
case '0':
case '1':
case '2':
case '3':
case '4':
case '5':
case '6':
case '7':
case '8':
case '9':
case 't':
case 'f':
case 'n':
/* And they must not be keys of the object */
if (tokens != NULL && parser->toksuper != -1) {
const jsmntok_t *t = &tokens[parser->toksuper];
if (t->type == JSMN_OBJECT ||
(t->type == JSMN_STRING && t->size != 0)) {
return JSMN_ERROR_INVAL;
}
}
#else
/* In non-strict mode every unquoted value is a primitive */
default:
#endif
r = jsmn_parse_primitive(parser, js, len, tokens, num_tokens);
if (r < 0) {
return r;
}
count++;
if (parser->toksuper != -1 && tokens != NULL) {
tokens[parser->toksuper].size++;
}
break;
#ifdef JSMN_STRICT
/* Unexpected char in strict mode */
default:
return JSMN_ERROR_INVAL;
#endif
}
}
if (tokens != NULL) {
for (i = parser->toknext - 1; i >= 0; i--) {
/* Unmatched opened object or array */
if (tokens[i].start != -1 && tokens[i].end == -1) {
return JSMN_ERROR_PART;
}
}
}
return count;
}
/**
* Creates a new parser based over a given buffer with an array of tokens
* available.
*/
JSMN_API void jsmn_init(jsmn_parser *parser) {
parser->pos = 0;
parser->toknext = 0;
parser->toksuper = -1;
}
#endif /* JSMN_HEADER */
#ifdef __cplusplus
}
#endif
#endif /* JSMN_H */

304
jobTagger/src/main.c
View File

@ -1,304 +0,0 @@
/*
* =======================================================================================
*
* Author: Jan Eitzinger (je), jan.eitzinger@fau.de
* Copyright (c) 2019 RRZE, University Erlangen-Nuremberg
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in all
* copies or substantial portions of the Software.
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
* SOFTWARE.
*
* =======================================================================================
*/
#include <stdlib.h>
#include <stdio.h>
#include <unistd.h>
#include <limits.h>
#include <float.h>
#include <string.h>
#include <sys/stat.h>
#include <sys/mman.h>
#include <fcntl.h>
#ifdef _OPENMP
#include <omp.h>
#endif
#include "jsmn.h"
#include "timing.h"
#include "allocate.h"
#include "affinity.h"
#define HLINE "----------------------------------------------------------------------------\n"
#ifndef MIN
#define MIN(x,y) ((x)<(y)?(x):(y))
#endif
#ifndef MAX
#define MAX(x,y) ((x)>(y)?(x):(y))
#endif
#ifndef ABS
#define ABS(a) ((a) >= 0 ? (a) : -(a))
#endif
char* json_fetch(char* filepath)
{
int fd = open(filepath, O_RDONLY);
if ( fd == -1) {
perror("Cannot open output file\n"); exit(1);
}
int len = lseek(fd, 0, SEEK_END);
void *data = mmap(0, len, PROT_READ, MAP_PRIVATE, fd, 0);
return (char*) data;
}
jsmntok_t * json_tokenise(char *js)
{
jsmn_parser parser;
jsmn_init(&parser);
unsigned int n = 4096;
jsmntok_t *tokens = malloc(sizeof(jsmntok_t) * n);
int ret = jsmn_parse(&parser, js, strlen(js), tokens, n);
while (ret == JSMN_ERROR_NOMEM)
{
n = n * 2 + 1;
tokens = realloc(tokens, sizeof(jsmntok_t) * n);
ret = jsmn_parse(&parser, js, strlen(js), tokens, n);
}
if (ret == JSMN_ERROR_INVAL) {
printf("jsmn_parse: invalid JSON string");
exit(EXIT_SUCCESS);
}
if (ret == JSMN_ERROR_PART) {
printf("jsmn_parse: truncated JSON string");
exit(EXIT_SUCCESS);
}
return tokens;
}
int json_token_streq(char* js, jsmntok_t* t, char* s)
{
return (strncmp(js + t->start, s, t->end - t->start) == 0
&& strlen(s) == (size_t) (t->end - t->start));
}
char* json_token_tostr(char* js, jsmntok_t* t)
{
js[t->end] = '\0';
return js + t->start;
}
void print_token(jsmntok_t* t)
{
char* type;
switch ( t->type ){
case JSMN_STRING:
type = "STRING";
break;
case JSMN_OBJECT:
type = "OBJECT";
break;
case JSMN_ARRAY:
type = "ARRAY";
break;
case JSMN_PRIMITIVE:
type = "PRIMITIVE";
break;
}
printf("%s: S%d E%d C%d\n", type, t->start, t->end, t->size);
}
int main (int argc, char** argv)
{
char* filepath;
if ( argc > 1 ) {
filepath = argv[1];
} else {
printf("Usage: %s <filepath>\n",argv[0]);
exit(EXIT_SUCCESS);
}
char* js = json_fetch(filepath);
jsmntok_t* tokens = json_tokenise(js);
typedef enum {
START,
METRIC, METRIC_OBJECT,
SERIES, NODE_ARRAY,
NODE_OBJECT,
DATA,
SKIP,
STOP
} parse_state;
parse_state state = START;
size_t node_tokens = 0;
size_t skip_tokens = 0;
size_t metrics = 0;
size_t nodes = 0;
size_t elements = 0;
for (size_t i = 0, j = 1; j > 0; i++, j--)
{
jsmntok_t* t = &tokens[i];
if (t->type == JSMN_ARRAY || t->type == JSMN_OBJECT){
j += t->size;
}
print_token(t);
switch (state)
{
case START:
if (t->type != JSMN_OBJECT){
printf("Invalid response: root element must be object.");
exit(EXIT_SUCCESS);
}
state = METRIC;
break;
case METRIC:
if (t->type != JSMN_STRING){
printf("Invalid response: metric key must be a string.");
exit(EXIT_SUCCESS);
}
printf("METRIC\n");
state = METRIC_OBJECT;
object_tokens = t->size;
break;
case METRIC_OBJECT:
printf("METRIC OBJECT %lu\n", object_tokens);
object_tokens--;
if (t->type == JSMN_STRING && json_token_streq(js, t, "series")) {
state = SERIES;
} else {
state = SKIP;
if (t->type == JSMN_ARRAY || t->type == JSMN_OBJECT) {
skip_tokens = t->size;
}
}
// Last object value
if (object_tokens == 0) {
state = METRIC;
}
break;
case SKIP:
skip_tokens--;
printf("SKIP\n");
if (t->type == JSMN_ARRAY || t->type == JSMN_OBJECT) {
skip_tokens += t->size;
}
break;
case SERIES:
if (t->type != JSMN_ARRAY) {
printf("Unknown series value: expected array.");
}
printf("SERIES\n");
nodes = t->size;
state = NODE_ARRAY;
if (nodes == 0) {
state = METRIC_OBJECT;
}
break;
case NODE_ARRAY:
nodes--;
printf("NODE_ARRAY\n");
node_tokens = t->size;
state = NODE_OBJECT;
// Last node object
if (nodes == 0) {
state = STOP;
}
break;
case NODE_OBJECT:
node_tokens--;
printf("NODE_OBJECT\n");
// Keys are odd-numbered tokens within the object
if (node_tokens % 2 == 1)
{
if (t->type == JSMN_STRING && json_token_streq(js, t, "data")) {
state = DATA;
} else {
state = SKIP;
if (t->type == JSMN_ARRAY || t->type == JSMN_OBJECT) {
skip_tokens = t->size;
}
}
}
// Last object value
if (node_tokens == 0) {
state = NODE_ARRAY;
}
break;
case DATA:
if (t->type != JSMN_ARRAY || t->type != JSMN_STRING) {
printf("Unknown data value: expected string or array.");
}
if (t->type == JSMN_ARRAY) {
elements = t->size;
printf("%lu elements\n", elements );
state = SKIP;
skip_tokens = elements;
}
break;
case STOP:
// Just consume the tokens
break;
default:
printf("Invalid state %u", state);
}
}
free(tokens);
return (EXIT_SUCCESS);
}

48
jobTagger/src/timing.c
View File

@ -1,48 +0,0 @@
/*
* =======================================================================================
*
* Author: Jan Eitzinger (je), jan.eitzinger@fau.de
* Copyright (c) 2019 RRZE, University Erlangen-Nuremberg
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in all
* copies or substantial portions of the Software.
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
* SOFTWARE.
*
* =======================================================================================
*/
#include <stdlib.h>
#include <time.h>
double getTimeStamp()
{
struct timespec ts;
clock_gettime(CLOCK_MONOTONIC, &ts);
return (double)ts.tv_sec + (double)ts.tv_nsec * 1.e-9;
}
double getTimeResolution()
{
struct timespec ts;
clock_getres(CLOCK_MONOTONIC, &ts);
return (double)ts.tv_sec + (double)ts.tv_nsec * 1.e-9;
}
double getTimeStamp_()
{
return getTimeStamp();
}

35
jobTagger/src/timing.h
View File

@ -1,35 +0,0 @@
/*
* =======================================================================================
*
* Author: Jan Eitzinger (je), jan.eitzinger@fau.de
* Copyright (c) 2019 RRZE, University Erlangen-Nuremberg
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in all
* copies or substantial portions of the Software.
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
* SOFTWARE.
*
* =======================================================================================
*/
#ifndef __TIMING_H_
#define __TIMING_H_
extern double getTimeStamp();
extern double getTimeResolution();
extern double getTimeStamp_();
#endif

50
json-schema/cluster.schema.json
View File

@ -1,50 +0,0 @@
{
"$schema": "http://json-schema.org/draft-07/schema#",
"title": "HPC Cluster description",
"description": "Meta data information of a HPC cluster",
"type": "object",
"properties":{
"cluster_id": {
"description": "The unique identifier of a cluster",
"type": "string"
},
"processor_type": {
"description": "Processor type",
"type": "string"
},
"sockets_per_node": {
"description": "Number of sockets per node",
"type": "integer"
},
"cores_per_socket": {
"description": "Number of cores per socket",
"type": "integer"
},
"threads_per_core": {
"description": "Number of SMT threads per core",
"type": "integer"
},
"flop_rate_scalar": {
"description": "Theorethical node peak flop rate for scalar code in GFlops/s",
"type": "integer"
},
"flop_rate_simd": {
"description": "Theorethical node peak flop rate for SIMD code in GFlops/s",
"type": "integer"
},
"memory_bandwidth": {
"description": "Theorethical node peak memory bandwidth in GB/s",
"type": "integer"
}
},
"required":[
"cluster_id",
"processor_type",
"sockets_per_node",
"cores_per_socket",
"threads_per_core",
"flop_rate_scalar",
"flop_rate_simd",
"memory_bandwidth"
]
}

135
json-schema/job-data.schema.json
View File

@ -1,135 +0,0 @@
{
"$schema": "http://json-schema.org/draft-07/schema#",
"title": "Job metric data",
"description": "Meta data information of a HPC job",
"type": "object",
"properties": {
"mem_used": {
"description": "Memory capacity used (required)",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
},
"flops_any": {
"description": "Total flop rate with DP flops scaled up (required)",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
},
"mem_bw": {
"description": "Main memory bandwidth (required)",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
},
"net_bw": {
"description": "Total fast interconnect network bandwidth (required)",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
},
"file_bw": {
"description": "Total file IO bandwidth (required)",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
},
"ipc": {
"description": "Instructions executed per cycle",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
},
"cpu_used": {
"description": "CPU core utilization",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
},
"flops_dp": {
"description": "Double precision flop rate",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
},
"flops_sp": {
"description": "Single precision flops rate",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
},
"rapl_power": {
"description": "CPU power consumption",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
},
"gpu_used": {
"description": "GPU utilization",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
},
"gpu_mem_used": {
"description": "GPU memory capacity used",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
},
"gpu_power": {
"description": "GPU power consumption",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
},
"clock": {
"description": "Average core frequency",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
},
"eth_read_bw": {
"description": "Ethernet read bandwidth",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
},
"eth_write_bw": {
"description": "Ethernet write bandwidth",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
},
"lustre_read_bw": {
"description": "Lustre read bandwidth",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
},
"lustre_write_bw": {
"description": "Lustre write bandwidth",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
},
"lustre_read_req": {
"description": "Lustre read requests",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
},
"lustre_write_req": {
"description": "Lustre write requests",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
},
"lustre_inodes": {
"description": "Lustre inodes used",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
},
"lustre_accesses": {
"description": "Lustre open and close",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
},
"lustre_fsync": {
"description": "Lustre fsync",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
},
"lustre_create": {
"description": "Lustre create",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
},
"lustre_open": {
"description": "Lustre open",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
},
"lustre_close": {
"description": "Lustre close",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
},
"lustre_seek": {
"description": "Lustre seek",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
},
"ib_read_bw": {
"description": "Infiniband read bandwidth",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
},
"ib_write_bw": {
"description": "Infiniband write bandwidth",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
},
"ib_congestion": {
"description": "Infiniband congestion",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-metric-data.schema.json"
}
},
"required": [
"mem_used",
"flops_any",
"mem_bw",
"net_bw",
"file_bw"
]
}

238
json-schema/job-meta.schema.json
View File

@ -1,238 +0,0 @@
{
"$schema": "http://json-schema.org/draft-07/schema#",
"title": "Job meta data",
"description": "Meta data information of a HPC job",
"type": "object",
"properties": {
"job_id": {
"description": "The unique identifier of a job",
"type": "string"
},
"user_id": {
"description": "The unique identifier of a user",
"type": "string"
},
"project_id": {
"description": "The unique identifier of a project",
"type": "string"
},
"cluster_id": {
"description": "The unique identifier of a cluster",
"type": "string"
},
"num_nodes": {
"description": "Number of nodes used",
"type": "integer",
"exclusiveMinimum": 0
},
"exclusive": {
"description": "Job uses only exclusive nodes",
"type": "boolean"
},
"walltime": {
"description": "Requested walltime of job in seconds",
"type": "integer",
"exclusiveMinimum": 0
},
"job_state": {
"description": "Final state of job",
"type": "string",
"enum": [
"completed",
"failed",
"canceled",
"timeout"
]
},
"start_time": {
"description": "Start epoch time stamp in seconds",
"type": "integer",
"exclusiveMinimum": 0
},
"stop_time": {
"description": "Stop epoch time stamp in seconds",
"type": "integer",
"exclusiveMinimum": 0
},
"duration": {
"description": "Duration of job in seconds",
"type": "integer",
"exclusiveMinimum": 0
},
"nodes": {
"description": "List of nodes",
"type": "array",
"items": {
"type": "string"
},
"minItems": 1,
"uniqueItems": true
},
"tags": {
"description": "List of tags",
"type": "array",
"items": {
"type": "object",
"properties": {
"name": {
"type": "string"
},
"type": {
"type": "string"
}
},
"required": [
"name",
"type"
]
},
"uniqueItems": true
},
"statistics": {
"description": "Job statistic data",
"type": "object",
"properties": {
"mem_used": {
"description": "Memory capacity used (required)",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
},
"flops_any": {
"description": "Total flop rate with DP flops scaled up (required)",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
},
"mem_bw": {
"description": "Main memory bandwidth (required)",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
},
"net_bw": {
"description": "Total fast interconnect network bandwidth (required)",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
},
"file_bw": {
"description": "Total file IO bandwidth (required)",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
},
"ipc": {
"description": "Instructions executed per cycle",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
},
"cpu_used": {
"description": "CPU core utilization",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
},
"flops_dp": {
"description": "Double precision flop rate",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
},
"flops_sp": {
"description": "Single precision flops rate",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
},
"rapl_power": {
"description": "CPU power consumption",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
},
"gpu_used": {
"description": "GPU utilization",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
},
"gpu_mem_used": {
"description": "GPU memory capacity used",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
},
"gpu_power": {
"description": "GPU power consumption",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
},
"clock": {
"description": "Average core frequency",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
},
"eth_read_bw": {
"description": "Ethernet read bandwidth",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
},
"eth_write_bw": {
"description": "Ethernet write bandwidth",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
},
"lustre_read_bw": {
"description": "Lustre read bandwidth",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
},
"lustre_write_bw": {
"description": "Lustre write bandwidth",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
},
"lustre_read_req": {
"description": "Lustre read requests",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
},
"lustre_write_req": {
"description": "Lustre write requests",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
},
"lustre_inodes": {
"description": "Lustre inodes used",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
},
"lustre_accesses": {
"description": "Lustre open and close",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
},
"lustre_fsync": {
"description": "Lustre fsync",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
},
"lustre_create": {
"description": "Lustre create",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
},
"lustre_open": {
"description": "Lustre open",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
},
"lustre_close": {
"description": "Lustre close",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
},
"lustre_seek": {
"description": "Lustre seek",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
},
"ib_read_bw": {
"description": "Infiniband read bandwidth",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
},
"ib_write_bw": {
"description": "Infiniband write bandwidth",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
},
"ib_congestion": {
"description": "Infiniband congestion",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/job-statistic.schema.json"
}
},
"required": [
"mem_used",
"flops_any",
"mem_bw",
"net_bw",
"file_bw"
]
}
},
"required": [
"job_id",
"user_id",
"project_id",
"cluster_id",
"num_nodes",
"start_time",
"stop_time",
"duration",
"nodes",
"tags",
"statistics"
]
}

83
json-schema/job-metric-data.schema.json
View File

@ -1,83 +0,0 @@
{
"$schema": "http://json-schema.org/draft-07/schema#",
"title": "Job metric data",
"description": "Metric data of a HPC job",
"type": "object",
"properties": {
"unit": {
"description": "",
"type": "string"
},
"scope": {
"description": "",
"type": "string",
"enum": [
"node",
"cpu",
"socket"
]
},
"timestep": {
"description": "Measurement interval in seconds",
"type": "integer"
},
"series": {
"description": "",
"type": "array",
"items": {
"type": "object",
"properties": {
"node_id": {
"type": "string"
},
"id": {
"type": "integer"
},
"statistics": {
"type": "object",
"properties": {
"avg": {
"description": "Series average",
"type": "number",
"minimum": 0
},
"min": {
"description": "Series minimum",
"type": "number",
"minimum": 0
},
"max": {
"description": "Series maximum",
"type": "number",
"minimum": 0
}
},
"required": [
"avg",
"min",
"max"
]
},
"data": {
"type": "array",
"items": {
"type": "number",
"minimum": 0
},
"minItems": 1
}
},
"required": [
"node_id",
"data"
]
}
}
},
"required": [
"unit",
"scope",
"timestep",
"series"
]
}

33
json-schema/job-statistic.schema.json
View File

@ -1,33 +0,0 @@
{
"$schema": "http://json-schema.org/draft-07/schema#",
"title": "Job statistics",
"description": "Format specification for job metric statistics",
"type": "object",
"properties": {
"unit": {
"description": "Metric unit",
"#ref": "https://github.com/RRZE-HPC/HPCJobDatabase/blob/master/json-schema/unit.schema.json"
},
"avg": {
"description": "Job metric average",
"type": "number",
"minimum": 0
},
"min": {
"description": "Job metric minimum",
"type": "number",
"minimum": 0
},
"max": {
"description": "Job metric maximum",
"type": "number",
"minimum": 0
}
},
"required": [
"unit",
"avg",
"min",
"max"
]
}

36
json-schema/unit.schema.json
View File

@ -1,36 +0,0 @@
{
"$schema": "http://json-schema.org/draft-07/schema#",
"title": "Metric unit",
"description": "Format specification for job metric units",
"type": "object",
"properties": {
"base_unit": {
"description": "Metric base unit",
"type": "string",
"enum": [
"B",
"F",
"B/s",
"F/s",
"CPI",
"IPC",
"Hz",
]
},
"prefix": {
"description": "Unit prefix",
"type": "string",
"enum": [
"K",
"M",
"G",
"T",
"P",
"E"
]
}
},
"required": [
"base_unit"
]
}

36
restruct.pl
View File

@ -1,36 +0,0 @@
#!/usr/bin/env perl
use strict;
use warnings;
use utf8;
use File::Copy;
my $trunk = '/home/jan/prg/HPCJobDatabase';
my $basedir = $ARGV[0];
my $destdir = $ARGV[1];
opendir my $dh, $basedir or die "can't open directory: $!";
while ( readdir $dh ) {
use integer;
chomp;
next if $_ eq '.' or $_ eq '..';
my $jobID = $_;
my $srcPath = "$trunk/$basedir/$jobID";
$jobID =~ s/\.eadm//;
my $level1 = $jobID/1000;
my $level2 = $jobID%1000;
my $dstPath = sprintf("%s/%s/%d/%03d", $trunk, $destdir, $level1, $level2);
# print "COPY from $srcPath to $dstPath\n";
# print "$trunk/$destdir/$level1\n";
if (not -d "$trunk/$destdir/$level1") {
mkdir "$trunk/$destdir/$level1";
}
move($srcPath, $dstPath);
}

43
server.go Normal file
View File

@ -0,0 +1,43 @@
package main
import (
"log"
"net/http"
"os"
"github.com/99designs/gqlgen/graphql/handler"
"github.com/99designs/gqlgen/graphql/playground"
"github.com/gorilla/handlers"
"github.com/gorilla/mux"
"github.com/jmoiron/sqlx"
_ "github.com/mattn/go-sqlite3"
"github.com/moebiusband/cc-jobarchive/generated"
"github.com/moebiusband/cc-jobarchive/graph"
)
const defaultPort = "8080"
func main() {
port := os.Getenv("PORT")
if port == "" {
port = defaultPort
}
db, err := sqlx.Open("sqlite3", "./job.db")
if err != nil {
log.Fatal(err)
}
defer db.Close()
r := mux.NewRouter()
loggedRouter := handlers.LoggingHandler(os.Stdout, r)
srv := handler.NewDefaultServer(generated.NewExecutableSchema(generated.Config{Resolvers: &graph.Resolver{DB: db}}))
r.HandleFunc("/", playground.Handler("GraphQL playground", "/query"))
r.Handle("/query", srv)
log.Printf("connect to http://localhost:%s/ for GraphQL playground", port)
log.Fatal(http.ListenAndServe("127.0.0.1:8080",
handlers.CORS(handlers.AllowedHeaders([]string{"X-Requested-With", "Content-Type", "Authorization"}),
handlers.AllowedMethods([]string{"GET", "POST", "HEAD", "OPTIONS"}),
handlers.AllowedOrigins([]string{"*"}))(loggedRouter)))
}

143
syncDB.pl
View File

@ -1,143 +0,0 @@
#!/usr/bin/env perl
# =======================================================================================
#
# Author: Jan Eitzinger (je), jan.eitzinger@fau.de
# Copyright (c) 2019 RRZE, University Erlangen-Nuremberg
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in all
# copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
# SOFTWARE.
#
# =======================================================================================
use strict;
use warnings;
use utf8;
use File::Slurp;
use Data::Dumper;
use JSON::MaybeXS qw(encode_json decode_json);
use DBI;
my $database = $ARGV[0];
my $basedir = $ARGV[1];
my %attr = (
PrintError => 1,
RaiseError => 1
);
my $dbh = DBI->connect(
"DBI:SQLite:dbname=$database", "", "", \%attr)
or die "Could not connect to database: $DBI::errstr";
my $sth_select_job = $dbh->prepare(qq{
SELECT id, user_id, job_id, cluster_id,
start_time, stop_time, duration, num_nodes,
has_profile
FROM job
WHERE job_id=?
});
my $sth_update_job = $dbh->prepare(qq{
UPDATE job
SET has_profile = ?,
mem_used_max = ?,
flops_any_avg = ?,
mem_bw_avg = ?
WHERE id=?;
});
my ($TS, $TE);
my $counter = 0;
open(my $fh, '<:encoding(UTF-8)', './jobIds.txt')
or die "Could not open file $!";
$TS = time();
while ( <$fh> ) {
my ($jobID, $path1, $path2) = split ' ', $_;
$counter++;
my $jobmeta_json = read_file("$basedir/$path1/$path2/meta.json");
my $job = decode_json $jobmeta_json;
my @row = $dbh->selectrow_array($sth_select_job, undef, $jobID);
my ($db_id, $db_user_id, $db_job_id, $db_cluster_id, $db_start_time, $db_stop_time, $db_duration, $db_num_nodes, $db_has_profile);
# print Dumper($job);
if ( @row ) {
($db_id,
$db_user_id,
$db_job_id,
$db_cluster_id,
$db_start_time,
$db_stop_time,
$db_duration,
$db_num_nodes,
$db_has_profile) = @row;
if ($db_has_profile == 0) {
my $stats = $job->{statistics};
if ( $job->{user_id} ne $db_user_id ) {
print "jobID $jobID $job->{user_id} $db_user_id\n";
$job->{user_id} = $db_user_id;
}
# if ( $job->{start_time} != $db_start_time ) {
# print "start $jobID $job->{start_time} $db_start_time\n";
# }
# if ( $job->{stop_time} != $db_stop_time ) {
# print "stop $jobID $job->{stop_time} $db_stop_time\n";
# }
if ( $job->{duration} != $db_duration ) {
my $difference = $job->{duration} - $db_duration;
if ( abs($difference) > 120 ) {
print "####duration $jobID $job->{duration} $db_duration $difference\n";
}
}
if ( $job->{num_nodes} != $db_num_nodes ) {
print "####num nodes $jobID $job->{num_nodes} $db_num_nodes\n";
}
$sth_update_job->execute(
1,
$stats->{mem_used}->{max},
$stats->{flops_any}->{avg},
$stats->{mem_bw}->{avg},
$db_id
);
}
} else {
print "$jobID NOT in DB!\n";
}
if ( $counter == 100 ) {
$TE = time();
my $rate = $counter/($TE-$TS);
$counter = 0;
print "Processing $rate jobs per second\n";
$TS = $TE;
}
}
$dbh->disconnect;
close $fh;

74
tagController.pl
View File

@ -1,74 +0,0 @@
#!/usr/bin/env perl
# =======================================================================================
#
# Author: Jan Eitzinger (je), jan.eitzinger@fau.de
# Copyright (c) 2019 RRZE, University Erlangen-Nuremberg
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in all
# copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
# SOFTWARE.
#
# =======================================================================================
use strict;
use warnings;
use utf8;
use File::Slurp;
use Data::Dumper;
use JSON::MaybeXS qw(encode_json decode_json);
my $basedir = $ARGV[0];
my $basedir = './data';
my ($TS, $TE);
my $counter = 0;
open(my $fhn, '>:encoding(UTF-8)', './jobIds-tagged.txt')
or die "Could not open file $!";
open(my $fh, '<:encoding(UTF-8)', './jobIds.txt')
or die "Could not open file $!";
$TS = time();
while ( <$fh> ) {
my $line = $_;
my ($jobID, $system) = split '.', $line;
$counter++;
# my $json = read_file($jobDirectory.'/data.json');
# my $data = decode_json $json;
my $json = read_file($jobDirectory.'/meta.json');
my $meta = decode_json $json;
my $footprint = $meta->{statistics};
if ( $footprint->{flops_any}->{max} < 2.0 and $footprint->{mem_bw}->{max} < 2.0 ){
print $fhn $jobID;
}
if ( $counter == 20 ) {
$TE = time();
my $rate = $counter/($TE-$TS);
$counter = 0;
print "Processing $rate jobs per second\n";
$TS = $TE;
}
}
close $fh;
close $fhn;

226
utils/README.md Normal file
View File

@ -0,0 +1,226 @@
# HPCJobDatabase
A standardized interface and reference implementation for HPC job data.
The DB and json schema specification is available in the [wiki](https://github.com/RRZE-HPC/HPCJobDatabase/wiki).
# Dependencies
* Getopt::Long
* Pod::Usage
* DateTime::Format::Strptime
* DBD::SQLite
# Setup
```
sqlite3 jobDB < initDB.sql
```
# Helper Scripts
For all scripts apart from `acQuery.pl` the advice *use the source Luke* holds.
Help text for acQuery:
```
Usage:
acQuery.pl [options] -- <DB file>
Help Options:
--help Show help text
--man Show man page
--hasprofile <true|false> Only show jobs with timerseries metric data
--mode <mode> Set the operation mode
--user <user_id> Search for jobs of specific user
--project <project_id> Search for jobs of specific project
--numnodes <from> <to> Specify range for number of nodes of job
--starttime <from> <to> Specify range for start time of jobs
--duration <from> <to> Specify duration range of jobs
--mem_used <from> <to> Specify range for average main memory capacity of job
--mem_bandwidth <from> <to> Specify range for average main memory bandwidth of job
--flops_any <from> <to> Specify range for average flop any rate of job
Options:
--help Show a brief help information.
--man Read the manual, with examples
--hasprofile [true|false] Only show jobs with or without timerseries
metric data
--mode [ids|query|count|list|stat|perf] Specify output mode. Mode can be
one of:
ids - Print list of job ids matching conditions. One job id per
line.
query - Print the query string and then exit.
count - Only output the number of jobs matching the conditions.
(Default mode)
list - Output a record of every job matching the conditions.
stat - Output job statistic for all jobs matching the
conditions.
perf - Output job performance footprint statistic for all jobs
matching the conditions.
--user Search job for a specific user id.
--project Search job for a specific project.
--duration Specify condition for job duration. This option takes two
arguments: If both arguments are positive integers the condition is
duration between first argument and second argument. If the second
argument is zero condition is duration smaller than first argument. If
first argument is zero condition is duration larger than second
argument. Duration can be in seconds, minutes (append m) or hours
(append h).
--numnodes Specify condition for number of node range of job. This
option takes two arguments: If both arguments are positive integers the
condition is number of nodes between first argument and second argument.
If the second argument is zero condition is number of nodes smaller than
first argument. If first argument is zero condition is number of nodes
larger than second argument.
--starttime Specify condition for the starttime of job. This option
takes two arguments: If both arguments are positive integers the
condition is start time between first argument and second argument. If
the second argument is zero condition is start time smaller than first
argument. If first argument is zero condition is start time larger than
second argument. Start time must be given as date in the following
format: %d.%m.%Y/%H:%M.
--mem_used Specify condition for average main memory capacity used by
job. This option takes two arguments: If both arguments are positive
integers the condition is memory used is between first argument and
second argument. If the second argument is zero condition is memory used
is smaller than first argument. If first argument is zero condition is
memory used is larger than second argument.
--mem_bandwidth Specify condition for average main memory bandwidth used
by job. This option takes two arguments: If both arguments are positive
integers the condition is memory bandwidth is between first argument and
second argument. If the second argument is zero condition is memory
bandwidth is smaller than first argument. If first argument is zero
condition is memory bandwidth is larger than second argument.
--flops_any Specify condition for average flops any of job. This option
takes two arguments: If both arguments are positive integers the
condition is flops any is between first argument and second argument. If
the second argument is zero condition is flops any is smaller than first
argument. If first argument is zero condition is flops any is larger
than second argument.
```
# Examples
Query jobs with conditions:
```
[HPCJobDatabase] ./acQuery.pl --duration 20h 24h --starttime 01.08.2018/12:00 01.03.2019/12:00
COUNT 6476
```
Query jobs from alternative database file (default is jobDB):
```
[HPCJobDatabase] ./acQuery.pl --project project_30 --starttime 01.08.2018/12:00 01.03.2019/12:00 -- jobDB-anon-emmy
COUNT 21560
```
Get job statistics output:
```
[HPCJobDatabase] ./acQuery.pl --project project_30 --mode stat --duration 0 20h --starttime 01.08.2018/12:00 01.03.2019/12:00 -- jobDB-anon-emmy
=================================
Job count: 747
Total walltime [h]: 16334
Total node hours [h]: 78966
Histogram: Number of nodes
nodes count
1 54 ****
2 1
3 1
4 36 ****
5 522 *******
6 118 *****
7 15 ***
Histogram: Walltime
hours count
20 250 ******
21 200 ******
22 114 *****
23 183 ******
```
Get job performance statistics:
```
[HPCJobDatabase] ./acQuery.pl --project project_30 --mode perf --duration 0 20h --numnodes 1 4 --starttime 01.08.2018/12:00 01.03.2019/12:00 -- jobDB-anon-emmy
=================================
Job count: 92
Jobs with performance profile: 48
Total walltime [h]: 2070
Total node hours [h]: 4332
Histogram: Mem used
Mem count
2 3 **
3 4 **
18 2 *
19 3 **
20 2 *
21 1
22 2 *
23 5 **
24 2 *
25 1
26 1
27 3 **
29 1
30 2 *
31 1
34 1
35 1
36 1
41 1
42 2 *
43 2 *
44 1
49 1
50 2 *
51 1
52 1
53 1
Histogram: Memory bandwidth
BW count
1 1
2 9 ***
3 1
4 1
5 4 **
6 2 *
7 10 ***
8 9 ***
9 11 ***
Histogram: Flops any
flops count
1 3 **
2 1
3 4 **
4 3 **
5 9 ***
6 10 ***
7 11 ***
85 1
225 1
236 1
240 2 *
244 2 *
```

0
acImportPBS.pl → utils/acImportPBS.pl
View File

0
acImportSlurm.pl → utils/acImportSlurm.pl
View File

51
acQuery.pl → utils/acQuery.pl
View File

@ -2,7 +2,7 @@
# ======================================================================================= # =======================================================================================
# #
# Author: Jan Eitzinger (je), jan.eitzinger@fau.de # Author: Jan Eitzinger (je), jan.eitzinger@fau.de
# Copyright (c) 2019 RRZE, University Erlangen-Nuremberg # Copyright (c) 2020 RRZE, University Erlangen-Nuremberg
# #
# Permission is hereby granted, free of charge, to any person obtaining a copy # Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal # of this software and associated documentation files (the "Software"), to deal
@ -31,6 +31,7 @@ use utf8;
use Data::Dumper; use Data::Dumper;
use Getopt::Long; use Getopt::Long;
use Pod::Usage; use Pod::Usage;
use DateTime;
use DateTime::Format::Strptime; use DateTime::Format::Strptime;
use DBI; use DBI;
@ -40,7 +41,7 @@ my ($add, $from, $to);
my $dateParser = my $dateParser =
DateTime::Format::Strptime->new( DateTime::Format::Strptime->new(
pattern => '%d.%m.%Y/%H:%M', pattern => '%d.%m.%Y/%H:%M',
time_zone => 'Europe/Berlin', time_zone => 'Europe/Berlin',
on_error => 'undef' on_error => 'undef'
); );
@ -50,6 +51,7 @@ my $man = 0;
my $hasprofile = ''; my $hasprofile = '';
my $mode = 'count'; my $mode = 'count';
my $user = ''; my $user = '';
my $jobID = '';
my $project = ''; my $project = '';
my @numnodes; my @numnodes;
my @starttime; my @starttime;
@ -59,18 +61,19 @@ my @mem_bandwidth;
my @flops_any; my @flops_any;
GetOptions ( GetOptions (
'help' => \$help, 'help' => \$help,
'man' => \$man, 'man' => \$man,
'hasprofile=s' => \$hasprofile, 'hasprofile=s' => \$hasprofile,
'mode=s' => \$mode, 'mode=s' => \$mode,
'user=s' => \$user, 'user=s' => \$user,
'project=s' => \$project, 'job=s' => \$jobID,
'numnodes=i{2}' => \@numnodes, 'project=s' => \$project,
'starttime=s{2}' => \@starttime, 'numnodes=i{2}' => \@numnodes,
'duration=s{2}' => \@duration, 'starttime=s{2}' => \@starttime,
'mem_used=i{2}' => \@mem_used, 'duration=s{2}' => \@duration,
'mem_bandwidth=i{2}' => \@mem_bandwidth, 'mem_used=i{2}' => \@mem_used,
'flops_any=i{2}' => \@flops_any 'mem_bandwidth=i{2}' => \@mem_bandwidth,
'flops_any=i{2}' => \@flops_any
) or pod2usage(2); ) or pod2usage(2);
my %attr = ( my %attr = (
@ -249,14 +252,17 @@ sub printJobStat {
sub printJob { sub printJob {
my $job = shift; my $job = shift;
my $durationHours = sprintf("%.2f", $job->{duration}/3600);
my $startDatetime = DateTime->from_epoch(epoch=>$job->{start_time}, time_zone => 'Europe/Berlin',);
my $stopDatetime = DateTime->from_epoch(epoch=>$job->{stop_time}, time_zone => 'Europe/Berlin',);
my $jobString = <<"END_JOB"; my $jobString = <<"END_JOB";
================================= =================================
JobId: $job->{job_id} JobId: $job->{job_id}
UserId: $job->{user_id} UserId: $job->{user_id}
Number of nodes: $job->{num_nodes} Number of nodes: $job->{num_nodes}
From $job->{start_time} to $job->{stop_time} From $startDatetime to $stopDatetime
Duration $job->{duration} Duration $durationHours hours
END_JOB END_JOB
print $jobString; print $jobString;
@ -265,6 +271,17 @@ END_JOB
pod2usage(1) if $help; pod2usage(1) if $help;
pod2usage(-verbose => 2) if $man; pod2usage(-verbose => 2) if $man;
if ( $jobID ) {
my $sth = $dbh->prepare("SELECT * FROM job WHERE job_id=\'$jobID\'");
$sth->execute;
my %row;
$sth->bind_columns( \( @row{ @{$sth->{NAME_lc} } } ));
while ($sth->fetch) {
printJob(\%row);
}
exit;
}
# build query conditions # build query conditions
if ( $user ) { if ( $user ) {
push @conditions, "user_id=\'$user\'"; push @conditions, "user_id=\'$user\'";
@ -274,7 +291,6 @@ if ( $project ) {
push @conditions, "project_id=\'$project\'"; push @conditions, "project_id=\'$project\'";
} }
if ( @numnodes ) { if ( @numnodes ) {
($add, $from, $to) = processRange($numnodes[0], $numnodes[1]); ($add, $from, $to) = processRange($numnodes[0], $numnodes[1]);
buildCondition('num_nodes'); buildCondition('num_nodes');
@ -384,6 +400,7 @@ acQuery.pl - Wrapper script to access sqlite job database.
--man Show man page --man Show man page
--hasprofile <true|false> Only show jobs with timerseries metric data --hasprofile <true|false> Only show jobs with timerseries metric data
--mode <mode> Set the operation mode --mode <mode> Set the operation mode
--job <job_id> Search for a specific job
--user <user_id> Search for jobs of specific user --user <user_id> Search for jobs of specific user
--project <project_id> Search for jobs of specific project --project <project_id> Search for jobs of specific project
--numnodes <from> <to> Specify range for number of nodes of job --numnodes <from> <to> Specify range for number of nodes of job

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initDB.sql → utils/initDB.sql
View File