Restructure and simplify job repo

This commit is contained in:
Jan Eitzinger 2024-07-04 15:05:24 +02:00
parent 80c46bea7f
commit ac9bba8b5b
Signed by: moebiusband
GPG Key ID: 2574BA29B90D6DD5
6 changed files with 288 additions and 290 deletions

View File

@ -10,7 +10,6 @@ import (
"fmt"
"os"
"strings"
"time"
"github.com/ClusterCockpit/cc-backend/internal/config"
"github.com/ClusterCockpit/cc-backend/internal/repository"
@ -43,8 +42,8 @@ func HandleImportFlag(flag string) error {
}
dec := json.NewDecoder(bytes.NewReader(raw))
dec.DisallowUnknownFields()
jobMeta := schema.JobMeta{BaseJob: schema.JobDefaults}
if err = dec.Decode(&jobMeta); err != nil {
job := schema.JobMeta{BaseJob: schema.JobDefaults}
if err = dec.Decode(&job); err != nil {
log.Warn("Error while decoding raw json metadata for import")
return err
}
@ -68,26 +67,9 @@ func HandleImportFlag(flag string) error {
return err
}
// checkJobData(&jobData)
job.MonitoringStatus = schema.MonitoringStatusArchivingSuccessful
jobMeta.MonitoringStatus = schema.MonitoringStatusArchivingSuccessful
// if _, err = r.Find(&jobMeta.JobID, &jobMeta.Cluster, &jobMeta.StartTime); err != sql.ErrNoRows {
// if err != nil {
// log.Warn("Error while finding job in jobRepository")
// return err
// }
//
// return fmt.Errorf("REPOSITORY/INIT > a job with that jobId, cluster and startTime does already exist")
// }
//
job := schema.Job{
BaseJob: jobMeta.BaseJob,
StartTime: time.Unix(jobMeta.StartTime, 0),
StartTimeUnix: jobMeta.StartTime,
}
sc, err := archive.GetSubCluster(jobMeta.Cluster, jobMeta.SubCluster)
sc, err := archive.GetSubCluster(job.Cluster, job.SubCluster)
if err != nil {
log.Errorf("cannot get subcluster: %s", err.Error())
return err
@ -96,14 +78,13 @@ func HandleImportFlag(flag string) error {
job.Footprint = make(map[string]float64)
for _, fp := range sc.Footprint {
job.Footprint[fp] = util.LoadJobStat(&jobMeta, fp)
job.Footprint[fp] = util.LoadJobStat(&job, fp)
}
job.RawFootprint, err = json.Marshal(job.Footprint)
if err != nil {
log.Warn("Error while marshaling job footprint")
return err
}
job.RawResources, err = json.Marshal(job.Resources)
if err != nil {
log.Warn("Error while marshaling job resources")
@ -120,7 +101,7 @@ func HandleImportFlag(flag string) error {
return err
}
if err = archive.GetHandle().ImportJob(&jobMeta, &jobData); err != nil {
if err = archive.GetHandle().ImportJob(&job, &jobData); err != nil {
log.Error("Error while importing job")
return err
}

View File

@ -222,230 +222,6 @@ func (r *JobRepository) UpdateMetadata(job *schema.Job, key, val string) (err er
return archive.UpdateMetadata(job, job.MetaData)
}
// Find executes a SQL query to find a specific batch job.
// The job is queried using the batch job id, the cluster name,
// and the start time of the job in UNIX epoch time seconds.
// It returns a pointer to a schema.Job data structure and an error variable.
// To check if no job was found test err == sql.ErrNoRows
func (r *JobRepository) Find(
jobId *int64,
cluster *string,
startTime *int64,
) (*schema.Job, error) {
start := time.Now()
q := sq.Select(jobColumns...).From("job").
Where("job.job_id = ?", *jobId)
if cluster != nil {
q = q.Where("job.cluster = ?", *cluster)
}
if startTime != nil {
q = q.Where("job.start_time = ?", *startTime)
}
log.Debugf("Timer Find %s", time.Since(start))
return scanJob(q.RunWith(r.stmtCache).QueryRow())
}
// Find executes a SQL query to find a specific batch job.
// The job is queried using the batch job id, the cluster name,
// and the start time of the job in UNIX epoch time seconds.
// It returns a pointer to a schema.Job data structure and an error variable.
// To check if no job was found test err == sql.ErrNoRows
func (r *JobRepository) FindAll(
jobId *int64,
cluster *string,
startTime *int64,
) ([]*schema.Job, error) {
start := time.Now()
q := sq.Select(jobColumns...).From("job").
Where("job.job_id = ?", *jobId)
if cluster != nil {
q = q.Where("job.cluster = ?", *cluster)
}
if startTime != nil {
q = q.Where("job.start_time = ?", *startTime)
}
rows, err := q.RunWith(r.stmtCache).Query()
if err != nil {
log.Error("Error while running query")
return nil, err
}
jobs := make([]*schema.Job, 0, 10)
for rows.Next() {
job, err := scanJob(rows)
if err != nil {
log.Warn("Error while scanning rows")
return nil, err
}
jobs = append(jobs, job)
}
log.Debugf("Timer FindAll %s", time.Since(start))
return jobs, nil
}
// FindById executes a SQL query to find a specific batch job.
// The job is queried using the database id.
// It returns a pointer to a schema.Job data structure and an error variable.
// To check if no job was found test err == sql.ErrNoRows
func (r *JobRepository) FindById(jobId int64) (*schema.Job, error) {
q := sq.Select(jobColumns...).
From("job").Where("job.id = ?", jobId)
return scanJob(q.RunWith(r.stmtCache).QueryRow())
}
func (r *JobRepository) FindConcurrentJobs(
ctx context.Context,
job *schema.Job,
) (*model.JobLinkResultList, error) {
if job == nil {
return nil, nil
}
query, qerr := SecurityCheck(ctx, sq.Select("job.id", "job.job_id", "job.start_time").From("job"))
if qerr != nil {
return nil, qerr
}
query = query.Where("cluster = ?", job.Cluster)
var startTime int64
var stopTime int64
startTime = job.StartTimeUnix
hostname := job.Resources[0].Hostname
if job.State == schema.JobStateRunning {
stopTime = time.Now().Unix()
} else {
stopTime = startTime + int64(job.Duration)
}
// Add 200s overlap for jobs start time at the end
startTimeTail := startTime + 10
stopTimeTail := stopTime - 200
startTimeFront := startTime + 200
queryRunning := query.Where("job.job_state = ?").Where("(job.start_time BETWEEN ? AND ? OR job.start_time < ?)",
"running", startTimeTail, stopTimeTail, startTime)
queryRunning = queryRunning.Where("job.resources LIKE ?", fmt.Sprint("%", hostname, "%"))
query = query.Where("job.job_state != ?").Where("((job.start_time BETWEEN ? AND ?) OR (job.start_time + job.duration) BETWEEN ? AND ? OR (job.start_time < ?) AND (job.start_time + job.duration) > ?)",
"running", startTimeTail, stopTimeTail, startTimeFront, stopTimeTail, startTime, stopTime)
query = query.Where("job.resources LIKE ?", fmt.Sprint("%", hostname, "%"))
rows, err := query.RunWith(r.stmtCache).Query()
if err != nil {
log.Errorf("Error while running query: %v", err)
return nil, err
}
items := make([]*model.JobLink, 0, 10)
queryString := fmt.Sprintf("cluster=%s", job.Cluster)
for rows.Next() {
var id, jobId, startTime sql.NullInt64
if err = rows.Scan(&id, &jobId, &startTime); err != nil {
log.Warn("Error while scanning rows")
return nil, err
}
if id.Valid {
queryString += fmt.Sprintf("&jobId=%d", int(jobId.Int64))
items = append(items,
&model.JobLink{
ID: fmt.Sprint(id.Int64),
JobID: int(jobId.Int64),
})
}
}
rows, err = queryRunning.RunWith(r.stmtCache).Query()
if err != nil {
log.Errorf("Error while running query: %v", err)
return nil, err
}
for rows.Next() {
var id, jobId, startTime sql.NullInt64
if err := rows.Scan(&id, &jobId, &startTime); err != nil {
log.Warn("Error while scanning rows")
return nil, err
}
if id.Valid {
queryString += fmt.Sprintf("&jobId=%d", int(jobId.Int64))
items = append(items,
&model.JobLink{
ID: fmt.Sprint(id.Int64),
JobID: int(jobId.Int64),
})
}
}
cnt := len(items)
return &model.JobLinkResultList{
ListQuery: &queryString,
Items: items,
Count: &cnt,
}, nil
}
// Start inserts a new job in the table, returning the unique job ID.
// Statistics are not transfered!
func (r *JobRepository) Start(job *schema.JobMeta) (id int64, err error) {
job.RawFootprint, err = json.Marshal(job.Footprint)
if err != nil {
return -1, fmt.Errorf("REPOSITORY/JOB > encoding footprint field failed: %w", err)
}
job.RawResources, err = json.Marshal(job.Resources)
if err != nil {
return -1, fmt.Errorf("REPOSITORY/JOB > encoding resources field failed: %w", err)
}
job.RawMetaData, err = json.Marshal(job.MetaData)
if err != nil {
return -1, fmt.Errorf("REPOSITORY/JOB > encoding metaData field failed: %w", err)
}
res, err := r.DB.NamedExec(`INSERT INTO job (
job_id, user, project, cluster, subcluster, `+"`partition`"+`, array_job_id, num_nodes, num_hwthreads, num_acc,
exclusive, monitoring_status, smt, job_state, start_time, duration, walltime, footprint, resources, meta_data
) VALUES (
:job_id, :user, :project, :cluster, :subcluster, :partition, :array_job_id, :num_nodes, :num_hwthreads, :num_acc,
:exclusive, :monitoring_status, :smt, :job_state, :start_time, :duration, :walltime, :footprint, :resources, :meta_data
);`, job)
if err != nil {
return -1, err
}
return res.LastInsertId()
}
// Stop updates the job with the database id jobId using the provided arguments.
func (r *JobRepository) Stop(
jobId int64,
duration int32,
state schema.JobState,
monitoringStatus int32,
) (err error) {
stmt := sq.Update("job").
Set("job_state", state).
Set("duration", duration).
Set("monitoring_status", monitoringStatus).
Where("job.id = ?", jobId)
_, err = stmt.RunWith(r.stmtCache).Exec()
return
}
func (r *JobRepository) DeleteJobsBefore(startTime int64) (int, error) {
var cnt int
q := sq.Select("count(*)").From("job").Where("job.start_time < ?", startTime)
@ -789,26 +565,3 @@ func (r *JobRepository) FindJobsBetween(startTimeBegin int64, startTimeEnd int64
log.Infof("Return job count %d", len(jobs))
return jobs, nil
}
const NamedJobInsert string = `INSERT INTO job (
job_id, user, project, cluster, subcluster, ` + "`partition`" + `, array_job_id, num_nodes, num_hwthreads, num_acc,
exclusive, monitoring_status, smt, job_state, start_time, duration, walltime, footprint, resources, meta_data
) VALUES (
:job_id, :user, :project, :cluster, :subcluster, :partition, :array_job_id, :num_nodes, :num_hwthreads, :num_acc,
:exclusive, :monitoring_status, :smt, :job_state, :start_time, :duration, :walltime, :footprint, :resources, :meta_data
);`
func (r *JobRepository) InsertJob(job *schema.Job) (int64, error) {
res, err := r.DB.NamedExec(NamedJobInsert, job)
if err != nil {
log.Warn("Error while NamedJobInsert")
return 0, err
}
id, err := res.LastInsertId()
if err != nil {
log.Warn("Error while getting last insert ID")
return 0, err
}
return id, nil
}

View File

@ -0,0 +1,75 @@
// Copyright (C) NHR@FAU, University Erlangen-Nuremberg.
// All rights reserved.
// Use of this source code is governed by a MIT-style
// license that can be found in the LICENSE file.
package repository
import (
"encoding/json"
"fmt"
"github.com/ClusterCockpit/cc-backend/pkg/log"
"github.com/ClusterCockpit/cc-backend/pkg/schema"
sq "github.com/Masterminds/squirrel"
)
const NamedJobInsert string = `INSERT INTO job (
job_id, user, project, cluster, subcluster, ` + "`partition`" + `, array_job_id, num_nodes, num_hwthreads, num_acc,
exclusive, monitoring_status, smt, job_state, start_time, duration, walltime, footprint, resources, meta_data
) VALUES (
:job_id, :user, :project, :cluster, :subcluster, :partition, :array_job_id, :num_nodes, :num_hwthreads, :num_acc,
:exclusive, :monitoring_status, :smt, :job_state, :start_time, :duration, :walltime, :footprint, :resources, :meta_data
);`
func (r *JobRepository) InsertJob(job *schema.JobMeta) (int64, error) {
res, err := r.DB.NamedExec(NamedJobInsert, job)
if err != nil {
log.Warn("Error while NamedJobInsert")
return 0, err
}
id, err := res.LastInsertId()
if err != nil {
log.Warn("Error while getting last insert ID")
return 0, err
}
return id, nil
}
// Start inserts a new job in the table, returning the unique job ID.
// Statistics are not transfered!
func (r *JobRepository) Start(job *schema.JobMeta) (id int64, err error) {
job.RawFootprint, err = json.Marshal(job.Footprint)
if err != nil {
return -1, fmt.Errorf("REPOSITORY/JOB > encoding footprint field failed: %w", err)
}
job.RawResources, err = json.Marshal(job.Resources)
if err != nil {
return -1, fmt.Errorf("REPOSITORY/JOB > encoding resources field failed: %w", err)
}
job.RawMetaData, err = json.Marshal(job.MetaData)
if err != nil {
return -1, fmt.Errorf("REPOSITORY/JOB > encoding metaData field failed: %w", err)
}
return r.InsertJob(job)
}
// Stop updates the job with the database id jobId using the provided arguments.
func (r *JobRepository) Stop(
jobId int64,
duration int32,
state schema.JobState,
monitoringStatus int32,
) (err error) {
stmt := sq.Update("job").
Set("job_state", state).
Set("duration", duration).
Set("monitoring_status", monitoringStatus).
Where("job.id = ?", jobId)
_, err = stmt.RunWith(r.stmtCache).Exec()
return
}

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@ -0,0 +1,192 @@
// Copyright (C) NHR@FAU, University Erlangen-Nuremberg.
// All rights reserved.
// Use of this source code is governed by a MIT-style
// license that can be found in the LICENSE file.
package repository
import (
"context"
"database/sql"
"fmt"
"time"
"github.com/ClusterCockpit/cc-backend/internal/graph/model"
"github.com/ClusterCockpit/cc-backend/pkg/log"
"github.com/ClusterCockpit/cc-backend/pkg/schema"
sq "github.com/Masterminds/squirrel"
)
// Find executes a SQL query to find a specific batch job.
// The job is queried using the batch job id, the cluster name,
// and the start time of the job in UNIX epoch time seconds.
// It returns a pointer to a schema.Job data structure and an error variable.
// To check if no job was found test err == sql.ErrNoRows
func (r *JobRepository) Find(
jobId *int64,
cluster *string,
startTime *int64,
) (*schema.Job, error) {
start := time.Now()
q := sq.Select(jobColumns...).From("job").
Where("job.job_id = ?", *jobId)
if cluster != nil {
q = q.Where("job.cluster = ?", *cluster)
}
if startTime != nil {
q = q.Where("job.start_time = ?", *startTime)
}
log.Debugf("Timer Find %s", time.Since(start))
return scanJob(q.RunWith(r.stmtCache).QueryRow())
}
// Find executes a SQL query to find a specific batch job.
// The job is queried using the batch job id, the cluster name,
// and the start time of the job in UNIX epoch time seconds.
// It returns a pointer to a schema.Job data structure and an error variable.
// To check if no job was found test err == sql.ErrNoRows
func (r *JobRepository) FindAll(
jobId *int64,
cluster *string,
startTime *int64,
) ([]*schema.Job, error) {
start := time.Now()
q := sq.Select(jobColumns...).From("job").
Where("job.job_id = ?", *jobId)
if cluster != nil {
q = q.Where("job.cluster = ?", *cluster)
}
if startTime != nil {
q = q.Where("job.start_time = ?", *startTime)
}
rows, err := q.RunWith(r.stmtCache).Query()
if err != nil {
log.Error("Error while running query")
return nil, err
}
jobs := make([]*schema.Job, 0, 10)
for rows.Next() {
job, err := scanJob(rows)
if err != nil {
log.Warn("Error while scanning rows")
return nil, err
}
jobs = append(jobs, job)
}
log.Debugf("Timer FindAll %s", time.Since(start))
return jobs, nil
}
// FindById executes a SQL query to find a specific batch job.
// The job is queried using the database id.
// It returns a pointer to a schema.Job data structure and an error variable.
// To check if no job was found test err == sql.ErrNoRows
func (r *JobRepository) FindById(jobId int64) (*schema.Job, error) {
q := sq.Select(jobColumns...).
From("job").Where("job.id = ?", jobId)
return scanJob(q.RunWith(r.stmtCache).QueryRow())
}
func (r *JobRepository) FindConcurrentJobs(
ctx context.Context,
job *schema.Job,
) (*model.JobLinkResultList, error) {
if job == nil {
return nil, nil
}
query, qerr := SecurityCheck(ctx, sq.Select("job.id", "job.job_id", "job.start_time").From("job"))
if qerr != nil {
return nil, qerr
}
query = query.Where("cluster = ?", job.Cluster)
var startTime int64
var stopTime int64
startTime = job.StartTimeUnix
hostname := job.Resources[0].Hostname
if job.State == schema.JobStateRunning {
stopTime = time.Now().Unix()
} else {
stopTime = startTime + int64(job.Duration)
}
// Add 200s overlap for jobs start time at the end
startTimeTail := startTime + 10
stopTimeTail := stopTime - 200
startTimeFront := startTime + 200
queryRunning := query.Where("job.job_state = ?").Where("(job.start_time BETWEEN ? AND ? OR job.start_time < ?)",
"running", startTimeTail, stopTimeTail, startTime)
queryRunning = queryRunning.Where("job.resources LIKE ?", fmt.Sprint("%", hostname, "%"))
query = query.Where("job.job_state != ?").Where("((job.start_time BETWEEN ? AND ?) OR (job.start_time + job.duration) BETWEEN ? AND ? OR (job.start_time < ?) AND (job.start_time + job.duration) > ?)",
"running", startTimeTail, stopTimeTail, startTimeFront, stopTimeTail, startTime, stopTime)
query = query.Where("job.resources LIKE ?", fmt.Sprint("%", hostname, "%"))
rows, err := query.RunWith(r.stmtCache).Query()
if err != nil {
log.Errorf("Error while running query: %v", err)
return nil, err
}
items := make([]*model.JobLink, 0, 10)
queryString := fmt.Sprintf("cluster=%s", job.Cluster)
for rows.Next() {
var id, jobId, startTime sql.NullInt64
if err = rows.Scan(&id, &jobId, &startTime); err != nil {
log.Warn("Error while scanning rows")
return nil, err
}
if id.Valid {
queryString += fmt.Sprintf("&jobId=%d", int(jobId.Int64))
items = append(items,
&model.JobLink{
ID: fmt.Sprint(id.Int64),
JobID: int(jobId.Int64),
})
}
}
rows, err = queryRunning.RunWith(r.stmtCache).Query()
if err != nil {
log.Errorf("Error while running query: %v", err)
return nil, err
}
for rows.Next() {
var id, jobId, startTime sql.NullInt64
if err := rows.Scan(&id, &jobId, &startTime); err != nil {
log.Warn("Error while scanning rows")
return nil, err
}
if id.Valid {
queryString += fmt.Sprintf("&jobId=%d", int(jobId.Int64))
items = append(items,
&model.JobLink{
ID: fmt.Sprint(id.Int64),
JobID: int(jobId.Int64),
})
}
}
cnt := len(items)
return &model.JobLinkResultList{
ListQuery: &queryString,
Items: items,
Count: &cnt,
}, nil
}

View File

@ -72,7 +72,6 @@ func (r *UserRepository) GetUser(username string) (*schema.User, error) {
}
func (r *UserRepository) GetLdapUsernames() ([]string, error) {
var users []string
rows, err := r.DB.Query(`SELECT username FROM user WHERE user.ldap = 1`)
if err != nil {
@ -132,7 +131,6 @@ func (r *UserRepository) AddUser(user *schema.User) error {
}
func (r *UserRepository) DelUser(username string) error {
_, err := r.DB.Exec(`DELETE FROM user WHERE user.username = ?`, username)
if err != nil {
log.Errorf("Error while deleting user '%s' from DB", username)
@ -143,7 +141,6 @@ func (r *UserRepository) DelUser(username string) error {
}
func (r *UserRepository) ListUsers(specialsOnly bool) ([]*schema.User, error) {
q := sq.Select("username", "name", "email", "roles", "projects").From("user")
if specialsOnly {
q = q.Where("(roles != '[\"user\"]' AND roles != '[]')")
@ -186,8 +183,8 @@ func (r *UserRepository) ListUsers(specialsOnly bool) ([]*schema.User, error) {
func (r *UserRepository) AddRole(
ctx context.Context,
username string,
queryrole string) error {
queryrole string,
) error {
newRole := strings.ToLower(queryrole)
user, err := r.GetUser(username)
if err != nil {
@ -198,15 +195,15 @@ func (r *UserRepository) AddRole(
exists, valid := user.HasValidRole(newRole)
if !valid {
return fmt.Errorf("Supplied role is no valid option : %v", newRole)
return fmt.Errorf("supplied role is no valid option : %v", newRole)
}
if exists {
return fmt.Errorf("User %v already has role %v", username, newRole)
return fmt.Errorf("user %v already has role %v", username, newRole)
}
roles, _ := json.Marshal(append(user.Roles, newRole))
if _, err := sq.Update("user").Set("roles", roles).Where("user.username = ?", username).RunWith(r.DB).Exec(); err != nil {
log.Errorf("Error while adding new role for user '%s'", user.Username)
log.Errorf("error while adding new role for user '%s'", user.Username)
return err
}
return nil
@ -223,14 +220,14 @@ func (r *UserRepository) RemoveRole(ctx context.Context, username string, queryr
exists, valid := user.HasValidRole(oldRole)
if !valid {
return fmt.Errorf("Supplied role is no valid option : %v", oldRole)
return fmt.Errorf("supplied role is no valid option : %v", oldRole)
}
if !exists {
return fmt.Errorf("Role already deleted for user '%v': %v", username, oldRole)
return fmt.Errorf("role already deleted for user '%v': %v", username, oldRole)
}
if oldRole == schema.GetRoleString(schema.RoleManager) && len(user.Projects) != 0 {
return fmt.Errorf("Cannot remove role 'manager' while user %s still has assigned project(s) : %v", username, user.Projects)
return fmt.Errorf("cannot remove role 'manager' while user %s still has assigned project(s) : %v", username, user.Projects)
}
var newroles []string
@ -240,7 +237,7 @@ func (r *UserRepository) RemoveRole(ctx context.Context, username string, queryr
}
}
var mroles, _ = json.Marshal(newroles)
mroles, _ := json.Marshal(newroles)
if _, err := sq.Update("user").Set("roles", mroles).Where("user.username = ?", username).RunWith(r.DB).Exec(); err != nil {
log.Errorf("Error while removing role for user '%s'", user.Username)
return err
@ -251,15 +248,15 @@ func (r *UserRepository) RemoveRole(ctx context.Context, username string, queryr
func (r *UserRepository) AddProject(
ctx context.Context,
username string,
project string) error {
project string,
) error {
user, err := r.GetUser(username)
if err != nil {
return err
}
if !user.HasRole(schema.RoleManager) {
return fmt.Errorf("user '%s' is not a manager!", username)
return fmt.Errorf("user '%s' is not a manager", username)
}
if user.HasProject(project) {
@ -281,11 +278,11 @@ func (r *UserRepository) RemoveProject(ctx context.Context, username string, pro
}
if !user.HasRole(schema.RoleManager) {
return fmt.Errorf("user '%#v' is not a manager!", username)
return fmt.Errorf("user '%#v' is not a manager", username)
}
if !user.HasProject(project) {
return fmt.Errorf("user '%#v': Cannot remove project '%#v' - Does not match!", username, project)
return fmt.Errorf("user '%#v': Cannot remove project '%#v' - Does not match", username, project)
}
var exists bool
@ -298,7 +295,7 @@ func (r *UserRepository) RemoveProject(ctx context.Context, username string, pro
}
}
if exists == true {
if exists {
var result interface{}
if len(newprojects) == 0 {
result = "[]"