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Synchronize DB Schema with json schema

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Rework tests
This commit is contained in:
Jan Eitzinger 2023-04-21 12:59:27 +02:00
parent a8980c7a5e
commit 500ae29d25
16 changed files with 352 additions and 80 deletions
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5
cmd/cc-backend/main.go
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@ -116,7 +116,10 @@ func main() {
}
if flagMigrateDB {
repository.MigrateDB(config.Keys.DBDriver, config.Keys.DB)
err := repository.MigrateDB(config.Keys.DBDriver, config.Keys.DB)
if err != nil {
log.Fatal(err)
}
os.Exit(0)
}

5
internal/repository/dbConnection.go
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@ -56,7 +56,10 @@ func Connect(driver string, db string) {
}
dbConnInstance = &DBConnection{DB: dbHandle, Driver: driver}
checkDBVersion(driver, dbHandle.DB)
err = checkDBVersion(driver, dbHandle.DB)
if err != nil {
log.Fatal(err)
}
})
}

61
internal/repository/init.go
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@ -9,6 +9,7 @@ import (
"database/sql"
"encoding/json"
"fmt"
"math"
"os"
"strings"
"time"
@ -319,31 +320,71 @@ func loadJobStat(job *schema.JobMeta, metric string) float64 {
return 0.0
}
func getNormalizationFactor(v float64) (float64, int) {
count := 0
scale := -3
if v > 1000.0 {
for v > 1000.0 {
v *= 1e-3
count++
}
} else {
for v < 1.0 {
v *= 1e3
count++
}
scale = 3
}
return math.Pow10(count * scale), count * scale
}
func normalize(avg float64, u schema.Unit) (float64, schema.Unit) {
f, e := getNormalizationFactor(avg)
if e != 0 {
p := units.NewPrefixFromFactor(units.NewPrefix(*u.Prefix), e)
np := p.Prefix()
return f, schema.Unit{Prefix: &np, Base: u.Base}
}
return f, u
}
func checkJobData(d *schema.JobData) error {
for _, scopes := range *d {
var newUnit string
// Add node scope if missing
// var newUnit schema.Unit
// TODO Add node scope if missing
for _, metric := range scopes {
if strings.Contains(metric.Unit.Base, "B/s") ||
strings.Contains(metric.Unit.Base, "F/s") ||
strings.Contains(metric.Unit.Base, "B") {
// First get overall avg
// get overall avg
sum := 0.0
for _, s := range metric.Series {
sum += s.Statistics.Avg
}
avg := sum / float64(len(metric.Series))
f, u := normalize(avg, metric.Unit)
for _, s := range metric.Series {
fp := schema.ConvertFloatToFloat64(s.Data)
// Normalize values with new unit prefix
oldUnit := metric.Unit.Base
units.NormalizeSeries(fp, avg, oldUnit, &newUnit)
s.Data = schema.GetFloat64ToFloat(fp)
if u.Prefix != metric.Unit.Prefix {
for _, s := range metric.Series {
fp := schema.ConvertFloatToFloat64(s.Data)
for i := 0; i < len(fp); i++ {
fp[i] *= f
fp[i] = math.Ceil(fp[i])
}
s.Data = schema.GetFloat64ToFloat(fp)
}
metric.Unit.Prefix = u.Prefix
}
metric.Unit.Base = newUnit
}
}
}

101
internal/repository/init_test.go Normal file
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@ -0,0 +1,101 @@
// Copyright (C) 2022 NHR@FAU, University Erlangen-Nuremberg.
// All rights reserved.
// Use of this source code is governed by a MIT-style
// license that can be found in the LICENSE file.
package repository
import (
"fmt"
"path/filepath"
"testing"
"github.com/ClusterCockpit/cc-backend/pkg/log"
"github.com/ClusterCockpit/cc-backend/pkg/units"
_ "github.com/mattn/go-sqlite3"
)
func setupRepo(t *testing.T) *JobRepository {
log.Init("info", true)
tmpdir := t.TempDir()
dbfilepath := filepath.Join(tmpdir, "test.db")
err := MigrateDB("sqlite3", dbfilepath)
if err != nil {
t.Fatal(err)
}
Connect("sqlite3", dbfilepath)
return GetJobRepository()
}
func TestNormalizeFactor(t *testing.T) {
// var us string
s := []float64{2890031237, 23998994567, 389734042344, 390349424345}
// r := []float64{3, 24, 390, 391}
total := 0.0
for _, number := range s {
total += number
}
avg := total / float64(len(s))
fmt.Printf("AVG: %e\n", avg)
f, e := getNormalizationFactor(avg)
fmt.Printf("Factor %e Count %d\n", f, e)
np := units.NewPrefix("")
fmt.Printf("Prefix %e Short %s\n", float64(np), np.Prefix())
p := units.NewPrefixFromFactor(np, e)
if p.Prefix() != "G" {
t.Errorf("Failed Prefix or unit: Want G, Got %s", p.Prefix())
}
}
func TestNormalizeKeep(t *testing.T) {
s := []float64{3.0, 24.0, 390.0, 391.0}
total := 0.0
for _, number := range s {
total += number
}
avg := total / float64(len(s))
fmt.Printf("AVG: %e\n", avg)
f, e := getNormalizationFactor(avg)
fmt.Printf("Factor %e Count %d\n", f, e)
np := units.NewPrefix("G")
fmt.Printf("Prefix %e Short %s\n", float64(np), np.Prefix())
p := units.NewPrefixFromFactor(np, e)
if p.Prefix() != "G" {
t.Errorf("Failed Prefix or unit: Want G, Got %s", p.Prefix())
}
}
//
// func TestHandleImportFlag(t *testing.T) {
// t.Error("wrong summary for diagnostic ")
// r := setupRepo(t)
//
// s := "../../test/repo/meta1.json:../../test/repo/data1.json"
// err := HandleImportFlag(s)
// if err != nil {
// t.Fatal(err)
// }
//
// jobId, cluster, startTime := int64(1404396), "emmy", int64(1609299584)
// job, err := r.Find(&jobId, &cluster, &startTime)
// if err != nil {
// t.Fatal(err)
// }
//
// if job.ID != 1366 {
// t.Errorf("wrong summary for diagnostic 3\ngot: %d \nwant: 1366", job.JobID)
// }
// }

24
internal/repository/job_test.go
View File

@ -12,19 +12,21 @@ import (
_ "github.com/mattn/go-sqlite3"
)
func init() {
log.Init("info", true)
Connect("sqlite3", "../../test/test.db")
}
func setup(t *testing.T) *JobRepository {
log.Init("info", true)
dbfilepath := "../../test/test.db"
err := MigrateDB("sqlite3", dbfilepath)
if err != nil {
t.Fatal(err)
}
Connect("sqlite3", dbfilepath)
return GetJobRepository()
}
func TestFind(t *testing.T) {
r := setup(t)
jobId, cluster, startTime := int64(1404396), "emmy", int64(1609299584)
jobId, cluster, startTime := int64(398998), "fritz", int64(1675957496)
job, err := r.Find(&jobId, &cluster, &startTime)
if err != nil {
t.Fatal(err)
@ -32,7 +34,7 @@ func TestFind(t *testing.T) {
// fmt.Printf("%+v", job)
if job.ID != 1366 {
if job.ID != 5 {
t.Errorf("wrong summary for diagnostic 3\ngot: %d \nwant: 1366", job.JobID)
}
}
@ -40,14 +42,14 @@ func TestFind(t *testing.T) {
func TestFindById(t *testing.T) {
r := setup(t)
job, err := r.FindById(1366)
job, err := r.FindById(5)
if err != nil {
t.Fatal(err)
}
// fmt.Printf("%+v", job)
if job.JobID != 1404396 {
if job.JobID != 398998 {
t.Errorf("wrong summary for diagnostic 3\ngot: %d \nwant: 1404396", job.JobID)
}
}
@ -63,7 +65,7 @@ func TestGetTags(t *testing.T) {
fmt.Printf("TAGS %+v \n", tags)
// fmt.Printf("COUNTS %+v \n", counts)
if counts["bandwidth"] != 6 {
t.Errorf("wrong summary for diagnostic 3\ngot: %d \nwant: 6", counts["load-imbalance"])
if counts["bandwidth"] != 3 {
t.Errorf("wrong tag count \ngot: %d \nwant: 3", counts["bandwidth"])
}
}

36
internal/repository/migration.go
View File

@ -8,7 +8,6 @@ import (
"database/sql"
"embed"
"fmt"
"os"
"github.com/ClusterCockpit/cc-backend/pkg/log"
"github.com/golang-migrate/migrate/v4"
@ -22,37 +21,37 @@ const Version uint = 3
//go:embed migrations/*
var migrationFiles embed.FS
func checkDBVersion(backend string, db *sql.DB) {
func checkDBVersion(backend string, db *sql.DB) error {
var m *migrate.Migrate
if backend == "sqlite3" {
driver, err := sqlite3.WithInstance(db, &sqlite3.Config{})
if err != nil {
log.Fatal(err)
return err
}
d, err := iofs.New(migrationFiles, "migrations/sqlite3")
if err != nil {
log.Fatal(err)
return err
}
m, err = migrate.NewWithInstance("iofs", d, "sqlite3", driver)
if err != nil {
log.Fatal(err)
return err
}
} else if backend == "mysql" {
driver, err := mysql.WithInstance(db, &mysql.Config{})
if err != nil {
log.Fatal(err)
return err
}
d, err := iofs.New(migrationFiles, "migrations/mysql")
if err != nil {
log.Fatal(err)
return err
}
m, err = migrate.NewWithInstance("iofs", d, "mysql", driver)
if err != nil {
log.Fatal(err)
return err
}
}
@ -61,22 +60,22 @@ func checkDBVersion(backend string, db *sql.DB) {
if err == migrate.ErrNilVersion {
log.Warn("Legacy database without version or missing database file!")
} else {
log.Fatal(err)
return err
}
}
if v < Version {
log.Warnf("Unsupported database version %d, need %d.\nPlease backup your database file and run cc-backend --migrate-db", v, Version)
os.Exit(0)
return fmt.Errorf("Unsupported database version %d, need %d.\nPlease backup your database file and run cc-backend --migrate-db", v, Version)
}
if v > Version {
log.Warnf("Unsupported database version %d, need %d.\nPlease refer to documentation how to downgrade db with external migrate tool!", v, Version)
os.Exit(0)
return fmt.Errorf("Unsupported database version %d, need %d.\nPlease refer to documentation how to downgrade db with external migrate tool!", v, Version)
}
return nil
}
func MigrateDB(backend string, db string) {
func MigrateDB(backend string, db string) error {
var m *migrate.Migrate
if backend == "sqlite3" {
@ -87,17 +86,17 @@ func MigrateDB(backend string, db string) {
m, err = migrate.NewWithSourceInstance("iofs", d, fmt.Sprintf("sqlite3://%s?_foreign_keys=on", db))
if err != nil {
log.Fatal(err)
return err
}
} else if backend == "mysql" {
d, err := iofs.New(migrationFiles, "migrations/mysql")
if err != nil {
log.Fatal(err)
return err
}
m, err = migrate.NewWithSourceInstance("iofs", d, fmt.Sprintf("mysql://%s?multiStatements=true", db))
if err != nil {
log.Fatal(err)
return err
}
}
@ -105,9 +104,10 @@ func MigrateDB(backend string, db string) {
if err == migrate.ErrNoChange {
log.Info("DB already up to date!")
} else {
log.Fatal(err)
return err
}
}
m.Close()
return nil
}

14
internal/repository/migrations/sqlite3/01_init-schema.up.sql
View File

@ -7,19 +7,19 @@ CREATE TABLE IF NOT EXISTS job (
user VARCHAR(255) NOT NULL,
project VARCHAR(255) NOT NULL,
partition VARCHAR(255) NOT NULL,
array_job_id BIGINT NOT NULL,
duration INT NOT NULL DEFAULT 0,
walltime INT NOT NULL DEFAULT 0,
job_state VARCHAR(255) NOT NULL
partition VARCHAR(255),
array_job_id BIGINT,
duration INT NOT NULL,
walltime INT NOT NULL,
job_state VARCHAR(255) NOT NULL
CHECK(job_state IN ('running', 'completed', 'failed', 'cancelled',
'stopped', 'timeout', 'preempted', 'out_of_memory')),
meta_data TEXT, -- JSON
resources TEXT NOT NULL, -- JSON
num_nodes INT NOT NULL,
num_hwthreads INT NOT NULL,
num_acc INT NOT NULL,
num_hwthreads INT,
num_acc INT,
smt TINYINT NOT NULL DEFAULT 1 CHECK(smt IN (0, 1 )),
exclusive TINYINT NOT NULL DEFAULT 1 CHECK(exclusive IN (0, 1, 2)),
monitoring_status TINYINT NOT NULL DEFAULT 1 CHECK(monitoring_status IN (0, 1, 2, 3)),

25
internal/repository/user_test.go
View File

@ -11,12 +11,10 @@ import (
"github.com/ClusterCockpit/cc-backend/internal/auth"
"github.com/ClusterCockpit/cc-backend/internal/config"
"github.com/ClusterCockpit/cc-backend/pkg/log"
_ "github.com/mattn/go-sqlite3"
)
func init() {
Connect("sqlite3", "../../test/test.db")
}
func setupUserTest(t *testing.T) *UserCfgRepo {
const testconfig = `{
"addr": "0.0.0.0:8080",
@ -34,6 +32,15 @@ func setupUserTest(t *testing.T) *UserCfgRepo {
"startTime": { "from": "2022-01-01T00:00:00Z", "to": null }
} } ]
}`
log.Init("info", true)
dbfilepath := "../../test/test.db"
err := MigrateDB("sqlite3", dbfilepath)
if err != nil {
t.Fatal(err)
}
Connect("sqlite3", dbfilepath)
tmpdir := t.TempDir()
cfgFilePath := filepath.Join(tmpdir, "config.json")
if err := os.WriteFile(cfgFilePath, []byte(testconfig), 0666); err != nil {
@ -43,9 +50,10 @@ func setupUserTest(t *testing.T) *UserCfgRepo {
config.Init(cfgFilePath)
return GetUserCfgRepo()
}
func TestGetUIConfig(t *testing.T) {
r := setupUserTest(t)
u := auth.User{Username: "jan"}
u := auth.User{Username: "demo"}
cfg, err := r.GetUIConfig(&u)
if err != nil {
@ -53,10 +61,9 @@ func TestGetUIConfig(t *testing.T) {
}
tmp := cfg["plot_list_selectedMetrics"]
metrics := tmp.([]interface{})
str := metrics[2].(string)
if str != "mem_bw" {
metrics := tmp.([]string)
str := metrics[2]
if str != "mem_used" {
t.Errorf("wrong config\ngot: %s \nwant: mem_bw", str)
}
}

31
pkg/schema/job.go
View File

@ -11,8 +11,9 @@ import (
"time"
)
// Non-Swaggered Comment: BaseJob
// Non-Swaggered Comment: Common subset of Job and JobMeta. Use one of those, not this type directly.
// BaseJob is the common part of the job metadata structs
//
// Common subset of Job and JobMeta. Use one of those, not this type directly.
type BaseJob struct {
// The unique identifier of a job
@ -39,9 +40,10 @@ type BaseJob struct {
MetaData map[string]string `json:"metaData"` // Additional information about the job
}
// Non-Swaggered Comment: Job
// Non-Swaggered Comment: This type is used as the GraphQL interface and using sqlx as a table row.
// Job struct type
//
// This type is used as the GraphQL interface and using sqlx as a table row.
//
// Job model
// @Description Information of a HPC job.
type Job struct {
@ -60,13 +62,16 @@ type Job struct {
FileDataVolTotal float64 `json:"-" db:"file_data_vol_total"` // FileDataVolTotal as Float64
}
// Non-Swaggered Comment: JobMeta
// Non-Swaggered Comment: When reading from the database or sending data via GraphQL, the start time can be in the much more
// Non-Swaggered Comment: convenient time.Time type. In the `meta.json` files, the start time is encoded as a unix epoch timestamp.
// Non-Swaggered Comment: This is why there is this struct, which contains all fields from the regular job struct, but "overwrites"
// Non-Swaggered Comment: the StartTime field with one of type int64.
// Non-Swaggered Comment: ID *int64 `json:"id,omitempty"` >> never used in the job-archive, only available via REST-API
// JobMeta struct type
//
// When reading from the database or sending data via GraphQL, the start time
// can be in the much more convenient time.Time type. In the `meta.json`
// files, the start time is encoded as a unix epoch timestamp. This is why
// there is this struct, which contains all fields from the regular job
// struct, but "overwrites" the StartTime field with one of type int64. ID
// *int64 `json:"id,omitempty"` >> never used in the job-archive, only
// available via REST-API
//
// JobMeta model
// @Description Meta data information of a HPC job.
type JobMeta struct {
@ -74,7 +79,7 @@ type JobMeta struct {
ID *int64 `json:"id,omitempty"`
BaseJob
StartTime int64 `json:"startTime" db:"start_time" example:"1649723812" minimum:"1"` // Start epoch time stamp in seconds (Min > 0)
Statistics map[string]JobStatistics `json:"statistics,omitempty"` // Metric statistics of job
Statistics map[string]JobStatistics `json:"statistics"` // Metric statistics of job
}
const (

6
pkg/units/units.go
View File

@ -112,12 +112,12 @@ func getNormalizationFactor(v float64) (float64, int) {
return math.Pow10(count * scale), count * scale
}
func NormalizeValue(v *float64, us string, nu *string) {
func NormalizeValue(v *float64, us string) string {
u := NewUnit(us)
f, e := getNormalizationFactor((*v))
*v = math.Ceil(*v * f)
u.setPrefix(NewPrefixFromFactor(u.getPrefix(), e))
*nu = u.Short()
p := NewPrefixFromFactor(u.getPrefix(), e)
return p.Prefix()
}
func NormalizeSeries(s []float64, avg float64, us string, nu *string) {

120
test/integration_test.go
View File

@ -348,7 +348,10 @@ func setup(t *testing.T) *api.RestApi {
t.Fatal(err)
}
dbfilepath := filepath.Join(tmpdir, "test.db")
repository.MigrateDB("sqlite3", dbfilepath)
err := repository.MigrateDB("sqlite3", dbfilepath)
if err != nil {
t.Fatal(err)
}
cfgFilePath := filepath.Join(tmpdir, "config.json")
if err := os.WriteFile(cfgFilePath, []byte(testconfig), 0666); err != nil {
@ -566,13 +569,116 @@ func TestRestApi(t *testing.T) {
}
})
// t.Run("FailedJob", func(t *testing.T) {
// subtestLetJobFail(t, restapi, r)
// })
t.Run("FailedJob", func(t *testing.T) {
const startJobBody string = `{
"jobId": 12345,
"user": "testuser",
"project": "testproj",
"cluster": "testcluster",
"partition": "default",
"walltime": 3600,
"numNodes": 1,
"exclusive": 1,
"monitoringStatus": 1,
"smt": 1,
"resources": [
{
"hostname": "host123"
}
],
"startTime": 12345678
}`
// t.Run("ImportJob", func(t *testing.T) {
// testImportFlag(t)
// })
ok := t.Run("StartJob", func(t *testing.T) {
req := httptest.NewRequest(http.MethodPost, "/api/jobs/start_job/", bytes.NewBuffer([]byte(startJobBody)))
recorder := httptest.NewRecorder()
r.ServeHTTP(recorder, req)
response := recorder.Result()
if response.StatusCode != http.StatusCreated {
t.Fatal(response.Status, recorder.Body.String())
}
})
if !ok {
t.Fatal("subtest failed")
}
const stopJobBody string = `{
"jobId": 12345,
"cluster": "testcluster",
"jobState": "failed",
"stopTime": 12355678
}`
ok = t.Run("StopJob", func(t *testing.T) {
req := httptest.NewRequest(http.MethodPost, "/api/jobs/stop_job/", bytes.NewBuffer([]byte(stopJobBody)))
recorder := httptest.NewRecorder()
r.ServeHTTP(recorder, req)
response := recorder.Result()
if response.StatusCode != http.StatusOK {
t.Fatal(response.Status, recorder.Body.String())
}
restapi.JobRepository.WaitForArchiving()
jobid, cluster := int64(12345), "testcluster"
job, err := restapi.JobRepository.Find(&jobid, &cluster, nil)
if err != nil {
t.Fatal(err)
}
if job.State != schema.JobStateFailed {
t.Fatal("expected job to be failed")
}
})
if !ok {
t.Fatal("subtest failed")
}
})
t.Run("ImportJob", func(t *testing.T) {
if err := repository.HandleImportFlag("meta.json:data.json"); err != nil {
t.Fatal(err)
}
repo := repository.GetJobRepository()
jobId := int64(20639587)
cluster := "taurus"
startTime := int64(1635856524)
job, err := repo.Find(&jobId, &cluster, &startTime)
if err != nil {
t.Fatal(err)
}
if job.NumNodes != 2 {
t.Errorf("NumNode: Received %d, expected 2", job.NumNodes)
}
ar := archive.GetHandle()
data, err := ar.LoadJobData(job)
if err != nil {
t.Fatal(err)
}
if len(data) != 8 {
t.Errorf("Job data length: Got %d, want 8", len(data))
}
r := map[string]string{"mem_used": "GB", "net_bw": "KB/s",
"cpu_power": "W", "cpu_used": "",
"file_bw": "KB/s", "flops_any": "F/s",
"mem_bw": "GB/s", "ipc": "IPC"}
for name, scopes := range data {
for _, metric := range scopes {
if metric.Unit.Base != r[name] {
t.Errorf("Metric %s unit: Got %s, want %s", name, metric.Unit.Base, r[name])
}
}
}
})
}
func subtestLetJobFail(t *testing.T, restapi *api.RestApi, r *mux.Router) {

1
test/repo/data1.json Normal file
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1
test/repo/data2.json Normal file
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1
test/repo/meta1.json Normal file
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@ -0,0 +1 @@
{"jobId":398764,"user":"k106eb10","project":"k106eb","cluster":"fritz","subCluster":"main","partition":"singlenode","arrayJobId":0,"numNodes":1,"numHwthreads":72,"numAcc":0,"exclusive":1,"monitoringStatus":1,"smt":0,"jobState":"completed","duration":177,"walltime":86340,"resources":[{"hostname":"f0649"}],"metaData":{"jobName":"ams_pipeline","jobScript":"#!/bin/bash -l\n#SBATCH --job-name=ams_pipeline\n#SBATCH --time=23:59:00\n#SBATCH --partition=singlenode\n#SBATCH --ntasks=72\n#SBATCH --hint=multithread\n#SBATCH --chdir=/home/atuin/k106eb/k106eb10/ACE/Ni-Al/DFT/VASP_PBE_500_0.125_0.1_NM/AlNi/binaries/bulk/moreprototypesYury/gen_131_CuTe/cfg/Ni2Al2\n#SBATCH --export=NONE\nunset SLURM_EXPORT_ENV\nuss=$(whoami)\nfind /dev/shm/ -user $uss -type f -mmin +30 -delete\ncd \"/home/atuin/k106eb/k106eb10/ACE/Ni-Al/DFT/VASP_PBE_500_0.125_0.1_NM/AlNi/binaries/bulk/moreprototypesYury/gen_131_CuTe/cfg/Ni2Al2\"\nams_pipeline pipeline.json \u003e \"/home/atuin/k106eb/k106eb10/ACE/Ni-Al/DFT/VASP_PBE_500_0.125_0.1_NM/AlNi/binaries/bulk/moreprototypesYury/gen_131_CuTe/cfg/Ni2Al2/ams_pipeline_job.sh.out\" 2\u003e \"/home/atuin/k106eb/k106eb10/ACE/Ni-Al/DFT/VASP_PBE_500_0.125_0.1_NM/AlNi/binaries/bulk/moreprototypesYury/gen_131_CuTe/cfg/Ni2Al2/ams_pipeline_job.sh.err\"\n","slurmInfo":"\nJobId=398764 JobName=ams_pipeline\n UserId=k106eb10(210387) GroupId=80111\n Account=k106eb QOS=normal \n Requeue=False Restarts=0 BatchFlag=True \n TimeLimit=1439\n SubmitTime=2023-02-09T14:10:20\n Partition=singlenode \n NodeList=f0649\n NumNodes=1 NumCPUs=72 NumTasks=72 CPUs/Task=1\n NTasksPerNode:Socket:Core=0:None:None\n TRES_req=cpu=72,mem=250000M,node=1,billing=72\n TRES_alloc=cpu=72,node=1,billing=72\n Command=/home/atuin/k106eb/k106eb10/ACE/Ni-Al/DFT/VASP_PBE_500_0.125_0.1_NM/AlNi/binaries/bulk/moreprototypesYury/gen_131_CuTe/cfg/Ni2Al2/ams_pipeline_job.sh\n WorkDir=/home/atuin/k106eb/k106eb10/ACE/Ni-Al/DFT/VASP_PBE_500_0.125_0.1_NM/AlNi/binaries/bulk/moreprototypesYury/gen_131_CuTe/cfg/Ni2Al2\n StdErr=\n StdOut=ams_pipeline.o%j\n"},"startTime":1675954353,"statistics":{"clock":{"unit":{"base":"Hz","prefix":"M"},"avg":1336.519,"min":801.564,"max":2348.215},"cpu_load":{"unit":{"base":""},"avg":31.64,"min":17.36,"max":45.54},"cpu_power":{"unit":{"base":"W"},"avg":150.018,"min":93.672,"max":261.592},"cpu_user":{"unit":{"base":""},"avg":28.518,"min":0.09,"max":57.343},"flops_any":{"unit":{"base":"F/s","prefix":"G"},"avg":45.012,"min":0,"max":135.037},"flops_dp":{"unit":{"base":"F/s","prefix":"G"},"avg":22.496,"min":0,"max":67.488},"flops_sp":{"unit":{"base":"F/s","prefix":"G"},"avg":0.02,"min":0,"max":0.061},"ib_recv":{"unit":{"base":"B/s"},"avg":14442.82,"min":219.998,"max":42581.368},"ib_recv_pkts":{"unit":{"base":"packets/s"},"avg":201.532,"min":1.25,"max":601.345},"ib_xmit":{"unit":{"base":"B/s"},"avg":282.098,"min":56.2,"max":569.363},"ib_xmit_pkts":{"unit":{"base":"packets/s"},"avg":1.228,"min":0.433,"max":2},"ipc":{"unit":{"base":"IPC"},"avg":0.77,"min":0.564,"max":0.906},"mem_bw":{"unit":{"base":"B/s","prefix":"G"},"avg":4.872,"min":0.025,"max":14.552},"mem_power":{"unit":{"base":"W"},"avg":7.725,"min":6.286,"max":10.556},"mem_used":{"unit":{"base":"B","prefix":"G"},"avg":6.162,"min":6.103,"max":6.226},"nfs4_read":{"unit":{"base":"B/s","prefix":"M"},"avg":1045.333,"min":311,"max":1525},"nfs4_total":{"unit":{"base":"B/s","prefix":"M"},"avg":6430,"min":2796,"max":11518},"nfs4_write":{"unit":{"base":"B/s","prefix":"M"},"avg":24.333,"min":0,"max":38},"vectorization_ratio":{"unit":{"base":"%"},"avg":25.528,"min":0,"max":76.585}}}

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test/repo/meta2.json Normal file
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{"jobId":398955,"user":"k106eb10","project":"k106eb","cluster":"fritz","subCluster":"main","partition":"singlenode","arrayJobId":0,"numNodes":1,"numHwthreads":72,"numAcc":0,"exclusive":1,"monitoringStatus":1,"smt":0,"jobState":"completed","duration":260,"walltime":86340,"resources":[{"hostname":"f0720"}],"metaData":{"jobName":"ams_pipeline","jobScript":"#!/bin/bash -l\n#SBATCH --job-name=ams_pipeline\n#SBATCH --time=23:59:00\n#SBATCH --partition=singlenode\n#SBATCH --ntasks=72\n#SBATCH --hint=multithread\n#SBATCH --chdir=/home/atuin/k106eb/k106eb10/ACE/Ni-Al/DFT/VASP_PBE_500_0.125_0.1_NM/AlNi/binaries/bulk/base-hcp/occ-shaken/hcp16.occ.4.shake.0/cfg/NiAl3NiAl11\n#SBATCH --export=NONE\nunset SLURM_EXPORT_ENV\nuss=$(whoami)\nfind /dev/shm/ -user $uss -type f -mmin +30 -delete\ncd \"/home/atuin/k106eb/k106eb10/ACE/Ni-Al/DFT/VASP_PBE_500_0.125_0.1_NM/AlNi/binaries/bulk/base-hcp/occ-shaken/hcp16.occ.4.shake.0/cfg/NiAl3NiAl11\"\nams_pipeline pipeline.json \u003e \"/home/atuin/k106eb/k106eb10/ACE/Ni-Al/DFT/VASP_PBE_500_0.125_0.1_NM/AlNi/binaries/bulk/base-hcp/occ-shaken/hcp16.occ.4.shake.0/cfg/NiAl3NiAl11/ams_pipeline_job.sh.out\" 2\u003e \"/home/atuin/k106eb/k106eb10/ACE/Ni-Al/DFT/VASP_PBE_500_0.125_0.1_NM/AlNi/binaries/bulk/base-hcp/occ-shaken/hcp16.occ.4.shake.0/cfg/NiAl3NiAl11/ams_pipeline_job.sh.err\"\n","slurmInfo":"\nJobId=398955 JobName=ams_pipeline\n UserId=k106eb10(210387) GroupId=80111\n Account=k106eb QOS=normal \n Requeue=False Restarts=0 BatchFlag=True \n TimeLimit=1439\n SubmitTime=2023-02-09T14:11:22\n Partition=singlenode \n NodeList=f0720\n NumNodes=1 NumCPUs=72 NumTasks=72 CPUs/Task=1\n NTasksPerNode:Socket:Core=0:None:None\n TRES_req=cpu=72,mem=250000M,node=1,billing=72\n TRES_alloc=cpu=72,node=1,billing=72\n Command=/home/atuin/k106eb/k106eb10/ACE/Ni-Al/DFT/VASP_PBE_500_0.125_0.1_NM/AlNi/binaries/bulk/base-hcp/occ-shaken/hcp16.occ.4.shake.0/cfg/NiAl3NiAl11/ams_pipeline_job.sh\n WorkDir=/home/atuin/k106eb/k106eb10/ACE/Ni-Al/DFT/VASP_PBE_500_0.125_0.1_NM/AlNi/binaries/bulk/base-hcp/occ-shaken/hcp16.occ.4.shake.0/cfg/NiAl3NiAl11\n StdErr=\n StdOut=ams_pipeline.o%j\n"},"startTime":1675956725,"statistics":{"clock":{"unit":{"base":"Hz","prefix":"M"},"avg":2335.254,"min":800.418,"max":2734.922},"cpu_load":{"unit":{"base":""},"avg":52.72,"min":34.46,"max":71.91},"cpu_power":{"unit":{"base":"W"},"avg":407.767,"min":93.932,"max":497.636},"cpu_user":{"unit":{"base":""},"avg":63.678,"min":19.872,"max":96.633},"flops_any":{"unit":{"base":"F/s","prefix":"G"},"avg":635.672,"min":0,"max":1332.874},"flops_dp":{"unit":{"base":"F/s","prefix":"G"},"avg":261.006,"min":0,"max":382.294},"flops_sp":{"unit":{"base":"F/s","prefix":"G"},"avg":113.659,"min":0,"max":568.286},"ib_recv":{"unit":{"base":"B/s"},"avg":27981.111,"min":69.4,"max":48084.589},"ib_recv_pkts":{"unit":{"base":"packets/s"},"avg":398.939,"min":0.5,"max":693.817},"ib_xmit":{"unit":{"base":"B/s"},"avg":188.513,"min":39.597,"max":724.568},"ib_xmit_pkts":{"unit":{"base":"packets/s"},"avg":0.867,"min":0.2,"max":2.933},"ipc":{"unit":{"base":"IPC"},"avg":0.944,"min":0.564,"max":1.291},"mem_bw":{"unit":{"base":"B/s","prefix":"G"},"avg":79.565,"min":0.021,"max":116.02},"mem_power":{"unit":{"base":"W"},"avg":24.692,"min":7.883,"max":31.318},"mem_used":{"unit":{"base":"B","prefix":"G"},"avg":22.566,"min":8.225,"max":27.613},"nfs4_read":{"unit":{"base":"B/s","prefix":"M"},"avg":647,"min":0,"max":1946},"nfs4_total":{"unit":{"base":"B/s","prefix":"M"},"avg":6181.6,"min":1270,"max":11411},"nfs4_write":{"unit":{"base":"B/s","prefix":"M"},"avg":22.4,"min":11,"max":29},"vectorization_ratio":{"unit":{"base":"%"},"avg":77.351,"min":0,"max":98.837}}}

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test/test.db
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