mirror of
https://github.com/ClusterCockpit/cc-backend
synced 2024-12-26 05:19:05 +01:00
Optionally initialise new db from JSON files
This commit is contained in:
Lou Knauer
parent
e4c0b3e955
commit
22e3e49970
2
go.mod
2
go.mod
@ -6,7 +6,7 @@ require (
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github.com/99designs/gqlgen v0.13.0
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github.com/gorilla/handlers v1.5.1
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github.com/gorilla/mux v1.6.1
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github.com/jmoiron/sqlx v1.3.1 // indirect
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github.com/jmoiron/sqlx v1.3.1
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github.com/mattn/go-sqlite3 v1.14.6
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github.com/vektah/gqlparser/v2 v2.1.0
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)
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23
go.sum
23
go.sum
@ -4,18 +4,23 @@ github.com/BurntSushi/toml v0.3.1/go.mod h1:xHWCNGjB5oqiDr8zfno3MHue2Ht5sIBksp03
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github.com/agnivade/levenshtein v1.0.1/go.mod h1:CURSv5d9Uaml+FovSIICkLbAUZ9S4RqaHDIsdSBg7lM=
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github.com/agnivade/levenshtein v1.0.3 h1:M5ZnqLOoZR8ygVq0FfkXsNOKzMCk0xRiow0R5+5VkQ0=
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github.com/agnivade/levenshtein v1.0.3/go.mod h1:4SFRZbbXWLF4MU1T9Qg0pGgH3Pjs+t6ie5efyrwRJXs=
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github.com/andreyvit/diff v0.0.0-20170406064948-c7f18ee00883 h1:bvNMNQO63//z+xNgfBlViaCIJKLlCJ6/fmUseuG0wVQ=
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github.com/andreyvit/diff v0.0.0-20170406064948-c7f18ee00883/go.mod h1:rCTlJbsFo29Kk6CurOXKm700vrz8f0KW0JNfpkRJY/8=
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github.com/arbovm/levenshtein v0.0.0-20160628152529-48b4e1c0c4d0 h1:jfIu9sQUG6Ig+0+Ap1h4unLjW6YQJpKZVmUzxsD4E/Q=
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github.com/arbovm/levenshtein v0.0.0-20160628152529-48b4e1c0c4d0/go.mod h1:t2tdKJDJF9BV14lnkjHmOQgcvEKgtqs5a1N3LNdJhGE=
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github.com/cpuguy83/go-md2man/v2 v2.0.0-20190314233015-f79a8a8ca69d h1:U+s90UTSYgptZMwQh2aRr3LuazLJIa+Pg3Kc1ylSYVY=
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github.com/cpuguy83/go-md2man/v2 v2.0.0-20190314233015-f79a8a8ca69d/go.mod h1:maD7wRr/U5Z6m/iR4s+kqSMx2CaBsrgA7czyZG/E6dU=
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github.com/davecgh/go-spew v1.1.0/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38=
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github.com/davecgh/go-spew v1.1.1 h1:vj9j/u1bqnvCEfJOwUhtlOARqs3+rkHYY13jYWTU97c=
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github.com/davecgh/go-spew v1.1.1/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38=
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github.com/dgryski/trifles v0.0.0-20190318185328-a8d75aae118c h1:TUuUh0Xgj97tLMNtWtNvI9mIV6isjEb9lBMNv+77IGM=
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github.com/dgryski/trifles v0.0.0-20190318185328-a8d75aae118c/go.mod h1:if7Fbed8SFyPtHLHbg49SI7NAdJiC5WIA09pe59rfAA=
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github.com/felixge/httpsnoop v1.0.1 h1:lvB5Jl89CsZtGIWuTcDM1E/vkVs49/Ml7JJe07l8SPQ=
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github.com/felixge/httpsnoop v1.0.1/go.mod h1:m8KPJKqk1gH5J9DgRY2ASl2lWCfGKXixSwevea8zH2U=
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github.com/go-chi/chi v3.3.2+incompatible/go.mod h1:eB3wogJHnLi3x/kFX2A+IbTBlXxmMeXJVKy9tTv1XzQ=
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github.com/go-sql-driver/mysql v1.5.0 h1:ozyZYNQW3x3HtqT1jira07DN2PArx2v7/mN66gGcHOs=
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github.com/go-sql-driver/mysql v1.5.0/go.mod h1:DCzpHaOWr8IXmIStZouvnhqoel9Qv2LBy8hT2VhHyBg=
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github.com/gogo/protobuf v1.0.0/go.mod h1:r8qH/GZQm5c6nD/R0oafs1akxWv10x8SbQlK7atdtwQ=
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github.com/gorilla/context v0.0.0-20160226214623-1ea25387ff6f h1:9oNbS1z4rVpbnkHBdPZU4jo9bSmrLpII768arSyMFgk=
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github.com/gorilla/context v0.0.0-20160226214623-1ea25387ff6f/go.mod h1:kBGZzfjB9CEq2AlWe17Uuf7NDRt0dE0s8S51q0aT7Yg=
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github.com/gorilla/handlers v1.5.1 h1:9lRY6j8DEeeBT10CvO9hGW0gmky0BprnvDI5vfhUHH4=
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github.com/gorilla/handlers v1.5.1/go.mod h1:t8XrUpc4KVXb7HGyJ4/cEnwQiaxrX/hz1Zv/4g96P1Q=
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@ -27,41 +32,39 @@ github.com/hashicorp/golang-lru v0.5.0 h1:CL2msUPvZTLb5O648aiLNJw3hnBxN2+1Jq8rCO
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github.com/hashicorp/golang-lru v0.5.0/go.mod h1:/m3WP610KZHVQ1SGc6re/UDhFvYD7pJ4Ao+sR/qLZy8=
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github.com/jmoiron/sqlx v1.3.1 h1:aLN7YINNZ7cYOPK3QC83dbM6KT0NMqVMw961TqrejlE=
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github.com/jmoiron/sqlx v1.3.1/go.mod h1:2BljVx/86SuTyjE+aPYlHCTNvZrnJXghYGpNiXLBMCQ=
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github.com/kr/pretty v0.1.0 h1:L/CwN0zerZDmRFUapSPitk6f+Q3+0za1rQkzVuMiMFI=
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github.com/kr/pretty v0.1.0/go.mod h1:dAy3ld7l9f0ibDNOQOHHMYYIIbhfbHSm3C4ZsoJORNo=
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github.com/kr/pty v1.1.1/go.mod h1:pFQYn66WHrOpPYNljwOMqo10TkYh1fy3cYio2l3bCsQ=
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github.com/kr/text v0.1.0 h1:45sCR5RtlFHMR4UwH9sdQ5TC8v0qDQCHnXt+kaKSTVE=
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github.com/kr/text v0.1.0/go.mod h1:4Jbv+DJW3UT/LiOwJeYQe1efqtUx/iVham/4vfdArNI=
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github.com/lib/pq v1.2.0 h1:LXpIM/LZ5xGFhOpXAQUIMM1HdyqzVYM13zNdjCEEcA0=
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github.com/lib/pq v1.2.0/go.mod h1:5WUZQaWbwv1U+lTReE5YruASi9Al49XbQIvNi/34Woo=
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github.com/logrusorgru/aurora v0.0.0-20200102142835-e9ef32dff381/go.mod h1:7rIyQOR62GCctdiQpZ/zOJlFyk6y+94wXzv6RNZgaR4=
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github.com/matryer/moq v0.0.0-20200106131100-75d0ddfc0007 h1:reVOUXwnhsYv/8UqjvhrMOu5CNT9UapHFLbQ2JcXsmg=
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github.com/matryer/moq v0.0.0-20200106131100-75d0ddfc0007/go.mod h1:9ELz6aaclSIGnZBoaSLZ3NAl1VTufbOrXBPvtcy6WiQ=
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github.com/mattn/go-colorable v0.1.4/go.mod h1:U0ppj6V5qS13XJ6of8GYAs25YV2eR4EVcfRqFIhoBtE=
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github.com/mattn/go-isatty v0.0.8/go.mod h1:Iq45c/XA43vh69/j3iqttzPXn0bhXyGjM0Hdxcsrc5s=
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github.com/mattn/go-isatty v0.0.12/go.mod h1:cbi8OIDigv2wuxKPP5vlRcQ1OAZbq2CE4Kysco4FUpU=
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github.com/mattn/go-sqlite3 v1.14.4 h1:4rQjbDxdu9fSgI/r3KN72G3c2goxknAqHHgPWWs8UlI=
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github.com/mattn/go-sqlite3 v1.14.4/go.mod h1:WVKg1VTActs4Qso6iwGbiFih2UIHo0ENGwNd0Lj+XmI=
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github.com/mattn/go-sqlite3 v1.14.6 h1:dNPt6NO46WmLVt2DLNpwczCmdV5boIZ6g/tlDrlRUbg=
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github.com/mattn/go-sqlite3 v1.14.6/go.mod h1:NyWgC/yNuGj7Q9rpYnZvas74GogHl5/Z4A/KQRfk6bU=
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github.com/mitchellh/mapstructure v0.0.0-20180203102830-a4e142e9c047 h1:zCoDWFD5nrJJVjbXiDZcVhOBSzKn3o9LgRLLMRNuru8=
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github.com/mitchellh/mapstructure v0.0.0-20180203102830-a4e142e9c047/go.mod h1:FVVH3fgwuzCH5S8UJGiWEs2h04kUh9fWfEaFds41c1Y=
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github.com/opentracing/basictracer-go v1.0.0/go.mod h1:QfBfYuafItcjQuMwinw9GhYKwFXS9KnPs5lxoYwgW74=
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github.com/opentracing/opentracing-go v1.0.2/go.mod h1:UkNAQd3GIcIGf0SeVgPpRdFStlNbqXla1AfSYxPUl2o=
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github.com/pkg/errors v0.8.1 h1:iURUrRGxPUNPdy5/HRSm+Yj6okJ6UtLINN0Q9M4+h3I=
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github.com/pkg/errors v0.8.1/go.mod h1:bwawxfHBFNV+L2hUp1rHADufV3IMtnDRdf1r5NINEl0=
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github.com/pmezard/go-difflib v1.0.0 h1:4DBwDE0NGyQoBHbLQYPwSUPoCMWR5BEzIk/f1lZbAQM=
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github.com/pmezard/go-difflib v1.0.0/go.mod h1:iKH77koFhYxTK1pcRnkKkqfTogsbg7gZNVY4sRDYZ/4=
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github.com/rs/cors v1.6.0/go.mod h1:gFx+x8UowdsKA9AchylcLynDq+nNFfI8FkUZdN/jGCU=
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github.com/russross/blackfriday/v2 v2.0.1 h1:lPqVAte+HuHNfhJ/0LC98ESWRz8afy9tM/0RK8m9o+Q=
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github.com/russross/blackfriday/v2 v2.0.1/go.mod h1:+Rmxgy9KzJVeS9/2gXHxylqXiyQDYRxCVz55jmeOWTM=
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github.com/sergi/go-diff v1.1.0 h1:we8PVUC3FE2uYfodKH/nBHMSetSfHDR6scGdBi+erh0=
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github.com/sergi/go-diff v1.1.0/go.mod h1:STckp+ISIX8hZLjrqAeVduY0gWCT9IjLuqbuNXdaHfM=
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github.com/shurcooL/httpfs v0.0.0-20171119174359-809beceb2371/go.mod h1:ZY1cvUeJuFPAdZ/B6v7RHavJWZn2YPVFQ1OSXhCGOkg=
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github.com/shurcooL/sanitized_anchor_name v1.0.0 h1:PdmoCO6wvbs+7yrJyMORt4/BmY5IYyJwS/kOiWx8mHo=
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github.com/shurcooL/sanitized_anchor_name v1.0.0/go.mod h1:1NzhyTcUVG4SuEtjjoZeVRXNmyL/1OwPU0+IJeTBvfc=
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github.com/shurcooL/vfsgen v0.0.0-20180121065927-ffb13db8def0/go.mod h1:TrYk7fJVaAttu97ZZKrO9UbRa8izdowaMIZcxYMbVaw=
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github.com/stretchr/objx v0.1.0/go.mod h1:HFkY916IF+rwdDfMAkV7OtwuqBVzrE8GR6GFx+wExME=
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github.com/stretchr/testify v1.2.1/go.mod h1:a8OnRcib4nhh0OaRAV+Yts87kKdq0PP7pXfy6kDkUVs=
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github.com/stretchr/testify v1.4.0 h1:2E4SXV/wtOkTonXsotYi4li6zVWxYlZuYNCXe9XRJyk=
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github.com/stretchr/testify v1.4.0/go.mod h1:j7eGeouHqKxXV5pUuKE4zz7dFj8WfuZ+81PSLYec5m4=
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github.com/urfave/cli/v2 v2.1.1 h1:Qt8FeAtxE/vfdrLmR3rxR6JRE0RoVmbXu8+6kZtYU4k=
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github.com/urfave/cli/v2 v2.1.1/go.mod h1:SE9GqnLQmjVa0iPEY0f1w3ygNIYcIJ0OKPMoW2caLfQ=
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github.com/vektah/dataloaden v0.2.1-0.20190515034641-a19b9a6e7c9e h1:+w0Zm/9gaWpEAyDlU1eKOuk5twTjAjuevXqcJJw8hrg=
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github.com/vektah/dataloaden v0.2.1-0.20190515034641-a19b9a6e7c9e/go.mod h1:/HUdMve7rvxZma+2ZELQeNh88+003LL7Pf/CZ089j8U=
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github.com/vektah/gqlparser/v2 v2.1.0 h1:uiKJ+T5HMGGQM2kRKQ8Pxw8+Zq9qhhZhz/lieYvCMns=
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github.com/vektah/gqlparser/v2 v2.1.0/go.mod h1:SyUiHgLATUR8BiYURfTirrTcGpcE+4XkV2se04Px1Ms=
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@ -79,10 +82,10 @@ golang.org/x/sys v0.0.0-20200116001909-b77594299b42/go.mod h1:h1NjWce9XRLGQEsW7w
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golang.org/x/text v0.3.0/go.mod h1:NqM8EUOU14njkJ3fqMW+pc6Ldnwhi/IjpwHt7yyuwOQ=
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golang.org/x/tools v0.0.0-20190125232054-d66bd3c5d5a6/go.mod h1:n7NCudcB/nEzxVGmLbDWY5pfWTLqBcC2KZ6jyYvM4mQ=
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golang.org/x/tools v0.0.0-20190515012406-7d7faa4812bd/go.mod h1:RgjU9mgBXZiqYHBnxXauZ1Gv1EHHAz9KjViQ78xBX0Q=
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golang.org/x/tools v0.0.0-20200114235610-7ae403b6b589 h1:rjUrONFu4kLchcZTfp3/96bR8bW8dIa8uz3cR5n0cgM=
|
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golang.org/x/tools v0.0.0-20200114235610-7ae403b6b589/go.mod h1:TB2adYChydJhpapKDTa4BR/hXlZSLoq2Wpct/0txZ28=
|
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golang.org/x/xerrors v0.0.0-20191011141410-1b5146add898/go.mod h1:I/5z698sn9Ka8TeJc9MKroUUfqBBauWjQqLJ2OPfmY0=
|
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gopkg.in/check.v1 v0.0.0-20161208181325-20d25e280405/go.mod h1:Co6ibVJAznAaIkqp8huTwlJQCZ016jof/cbN4VW5Yz0=
|
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gopkg.in/check.v1 v1.0.0-20190902080502-41f04d3bba15 h1:YR8cESwS4TdDjEe65xsg0ogRM/Nc3DYOhEAlW+xobZo=
|
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gopkg.in/check.v1 v1.0.0-20190902080502-41f04d3bba15/go.mod h1:Co6ibVJAznAaIkqp8huTwlJQCZ016jof/cbN4VW5Yz0=
|
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gopkg.in/yaml.v2 v2.2.2/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI=
|
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gopkg.in/yaml.v2 v2.2.4 h1:/eiJrUcujPVeJ3xlSWaiNi3uSVmDGBK1pDHUHAnao1I=
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180
init-db.go
Normal file
180
init-db.go
Normal file
@ -0,0 +1,180 @@
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package main
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import (
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"bufio"
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"database/sql"
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"encoding/json"
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"github.com/jmoiron/sqlx"
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"log"
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"os"
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"path/filepath"
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"strings"
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)
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func initDB(db *sqlx.DB, archive string) error {
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_, err := db.Exec(`
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DROP TABLE IF EXISTS job;
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DROP TABLE IF EXISTS tag;
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DROP TABLE IF EXISTS jobtag;
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CREATE TABLE job (
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id INTEGER PRIMARY KEY,
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job_id TEXT,
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user_id TEXT,
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project_id TEXT,
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cluster_id TEXT,
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start_time TIMESTAMP,
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duration INTEGER,
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job_state TEXT,
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num_nodes INTEGER,
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node_list TEXT,
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metadata TEXT,
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|
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flops_any_avg REAL,
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mem_bw_avg REAL,
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net_bw_avg REAL,
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file_bw_avg REAL,
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load_avg REAL);
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CREATE TABLE tag (
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id INTEGER PRIMARY KEY,
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tag_type TEXT,
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tag_name TEXT);
|
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CREATE TABLE jobtag (
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job_id INTEGER,
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tag_id INTEGER,
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PRIMARY KEY (job_id, tag_id),
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FOREIGN KEY (job_id) REFERENCES job (id) ON DELETE CASCADE ON UPDATE NO ACTION,
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FOREIGN KEY (tag_id) REFERENCES tag (id) ON DELETE CASCADE ON UPDATE NO ACTION);
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CREATE INDEX job_by_user ON job (user_id);
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CREATE INDEX job_by_starttime ON job (start_time);`)
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if err != nil {
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return err
|
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}
|
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|
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entries0, err := os.ReadDir(archive)
|
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if err != nil {
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return err
|
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}
|
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|
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tags := make(map[string]int64)
|
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for _, entry0 := range entries0 {
|
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entries1, err := os.ReadDir(filepath.Join(archive, entry0.Name()))
|
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if err != nil {
|
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return err
|
||||
}
|
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|
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for _, entry1 := range entries1 {
|
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if !entry1.IsDir() {
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continue
|
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}
|
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|
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entries2, err := os.ReadDir(filepath.Join(archive, entry0.Name(), entry1.Name()))
|
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if err != nil {
|
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return err
|
||||
}
|
||||
|
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for _, entry2 := range entries2 {
|
||||
if err = loadJob(db, tags, filepath.Join(archive, entry0.Name(), entry1.Name(), entry2.Name())); err != nil {
|
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return err
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
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|
||||
return nil
|
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}
|
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|
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type JobMetaFile struct {
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JobId string `json:"job_id"`
|
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UserId string `json:"user_id"`
|
||||
ProjectId string `json:"project_id"`
|
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ClusterId string `json:"cluster_id"`
|
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NumNodes int `json:"num_nodes"`
|
||||
JobState string `json:"job_state"`
|
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StartTime int64 `json:"start_time"`
|
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Duration int64 `json:"duration"`
|
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Nodes []string `json:"nodes"`
|
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Tags []struct {
|
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Name string `json:"name"`
|
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Type string `json:"type"`
|
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} `json:"tags"`
|
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Statistics map[string]struct {
|
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Unit string `json:"unit"`
|
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Avg float64 `json:"avg"`
|
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Min float64 `json:"min"`
|
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Max float64 `json:"max"`
|
||||
} `json:"statistics"`
|
||||
}
|
||||
|
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func loadJob(db *sqlx.DB, tags map[string]int64, path string) error {
|
||||
f, err := os.Open(filepath.Join(path, "meta.json"))
|
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if err != nil {
|
||||
return err
|
||||
}
|
||||
defer f.Close()
|
||||
|
||||
var job JobMetaFile
|
||||
if err := json.NewDecoder(bufio.NewReader(f)).Decode(&job); err != nil {
|
||||
return err
|
||||
}
|
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|
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flopsAnyAvg := loadJobStat(&job, "flops_any")
|
||||
memBwAvg := loadJobStat(&job, "mem_bw")
|
||||
netBwAvg := loadJobStat(&job, "net_bw")
|
||||
fileBwAvg := loadJobStat(&job, "file_bw")
|
||||
loadAvg := loadJobStat(&job, "load_one")
|
||||
|
||||
res, err := db.Exec(`
|
||||
INSERT INTO job
|
||||
(job_id, user_id, project_id, cluster_id, start_time, duration, job_state, num_nodes, node_list, metadata,
|
||||
flops_any_avg, mem_bw_avg, net_bw_avg, file_bw_avg, load_avg)
|
||||
VALUES
|
||||
(?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?);`,
|
||||
job.JobId, job.UserId, job.ProjectId, job.ClusterId, job.StartTime, job.Duration, job.JobState, job.NumNodes, strings.Join(job.Nodes, ","), nil,
|
||||
flopsAnyAvg, memBwAvg, netBwAvg, fileBwAvg, loadAvg)
|
||||
if err != nil {
|
||||
return err
|
||||
}
|
||||
|
||||
id, err := res.LastInsertId()
|
||||
if err != nil {
|
||||
return err
|
||||
}
|
||||
|
||||
if id % 50 == 0 {
|
||||
log.Printf("Inserting Job (id: %d, jobId: %s, clusterId: %s)\n", id, job.JobId, job.ClusterId)
|
||||
}
|
||||
|
||||
for _, tag := range job.Tags {
|
||||
tagstr := tag.Name + ":" + tag.Type
|
||||
tagId, ok := tags[tagstr]
|
||||
if !ok {
|
||||
res, err := db.Exec(`INSERT INTO tag (tag_name, tag_type) VALUES (?, ?)`, tag.Name, tag.Type)
|
||||
if err != nil {
|
||||
return err
|
||||
}
|
||||
tagId, err = res.LastInsertId()
|
||||
if err != nil {
|
||||
return err
|
||||
}
|
||||
tags[tagstr] = tagId
|
||||
}
|
||||
|
||||
if _, err := db.Exec(`INSERT INTO jobtag (job_id, tag_id) VALUES (?, ?)`, id, tagId); err != nil {
|
||||
return err
|
||||
}
|
||||
}
|
||||
|
||||
return nil
|
||||
}
|
||||
|
||||
func loadJobStat(job *JobMetaFile, metric string) sql.NullFloat64 {
|
||||
val := sql.NullFloat64{Valid: false}
|
||||
if stats, ok := job.Statistics[metric]; ok {
|
||||
val.Valid = true
|
||||
val.Float64 = stats.Avg
|
||||
}
|
||||
|
||||
return val
|
||||
}
|
||||
16
server.go
16
server.go
@ -1,10 +1,10 @@
|
||||
package main
|
||||
|
||||
import (
|
||||
"flag"
|
||||
"log"
|
||||
"net/http"
|
||||
"os"
|
||||
"flag"
|
||||
|
||||
"github.com/99designs/gqlgen/graphql/handler"
|
||||
"github.com/99designs/gqlgen/graphql/playground"
|
||||
@ -17,11 +17,13 @@ import (
|
||||
)
|
||||
|
||||
func main() {
|
||||
var reinitDB bool
|
||||
var port, staticFiles, jobDBFile string
|
||||
|
||||
flag.StringVar(&port, "port", "8080", "Port on which to listen")
|
||||
flag.StringVar(&staticFiles, "static-files", "./frontend/public", "Directory who's contents shall be served as static files")
|
||||
flag.StringVar(&jobDBFile, "job-db", "./job.db", "SQLite 3 Jobs Database File")
|
||||
flag.BoolVar(&reinitDB, "init-db", false, "Initialize new SQLite Database")
|
||||
flag.Parse()
|
||||
|
||||
db, err := sqlx.Open("sqlite3", jobDBFile)
|
||||
@ -30,6 +32,18 @@ func main() {
|
||||
}
|
||||
defer db.Close()
|
||||
|
||||
if reinitDB {
|
||||
if err = initDB(db, "./job-data"); err != nil {
|
||||
log.Fatal(err)
|
||||
}
|
||||
|
||||
if err = db.Close(); err != nil {
|
||||
log.Fatal(err)
|
||||
}
|
||||
|
||||
return
|
||||
}
|
||||
|
||||
r := mux.NewRouter()
|
||||
loggedRouter := handlers.LoggingHandler(os.Stdout, r)
|
||||
|
||||
|
||||
Loading…
Reference in New Issue
Block a user