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https://github.com/ClusterCockpit/cc-backend
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First working version of anonymize script
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parent
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commit
173ddd5a48
104
anonDB.pl
104
anonDB.pl
@ -50,86 +50,92 @@ my $sth_select_all = $dbh->prepare(qq{
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FROM job;
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});
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my $sth_select_job = $dbh->prepare(qq{
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SELECT id, user_id, project_id
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FROM job
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WHERE job_id=?
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});
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my $sth_update_job = $dbh->prepare(qq{
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UPDATE job
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SET user_id = ?,
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project_id = ?,
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flops_any = ?,
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mem_bw = ?
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project_id = ?
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WHERE id=?;
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});
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my ($user_id, $num_nodes, $start_time, $stop_time, $queue, $duration, $db_id);
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# build user lookup
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$sth_select_all->execute;
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my $user_index = 0; my $project_index = 0;
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my %user_lookup; my %project_lookup;
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my %user_group;
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my %row;
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$sth_select_all->bind_columns( \( @row{ @{$sth->{NAME_lc} } } ));
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# build lookups
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$sth_select_all->execute;
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$sth_select_all->bind_columns( \( @row{ @{$sth_select_all->{NAME_lc} } } ));
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while ($sth_select_all->fetch) {
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my $user_id = $row->{'user_id'};
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my $user_id = $row{'user_id'};
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my $project_id = $row{'project_id'};
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if ( not exists $user_lookup{$user_id}) {
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print "New user $user_id\n";
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$user_index++;
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$user_lookup{$user_id} = $user_index;
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$user_group{$user_id} = $project_id;
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}
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if ( not exists $project_lookup{$project_id}) {
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$project_index++;
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$project_lookup{$project_id} = $project_index;
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}
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}
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exit;
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write_file("user-conversion.json", encode_json \%user_lookup);
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write_file("project-conversion.json", encode_json \%project_lookup);
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print "$user_index total users\n";
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print "$project_index total projects\n";
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# convert database
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$sth_select_all->execute;
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$sth_select_all->bind_columns( \( @row{ @{$sth_select_all->{NAME_lc} } } ));
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while ($sth_select_all->fetch) {
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my $user_id = 'user_'.$user_lookup{$row{'user_id'}};
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my $project_id = 'project_'.$project_lookup{$row{'project_id'}};
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# print "$row{'id'}: $user_id - $project_id\n";
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$sth_update_job->execute(
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$user_id,
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$project_id,
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$row{'id'}
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);
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}
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# convert job meta file
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opendir my $dh, $basedir or die "can't open directory: $!";
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while ( readdir $dh ) {
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chomp;
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next if $_ eq '.' or $_ eq '..';
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my $jobID = $_;
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my $needsUpdate = 0;
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my $jobmeta_json = read_file("$basedir/$jobID/meta.json");
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my $job = decode_json $jobmeta_json;
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my @row = $dbh->selectrow_array($sth_select_job, undef, $jobID);
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my ($db_id, $db_user_id, $db_job_id, $db_cluster_id, $db_start_time, $db_stop_time, $db_duration, $db_num_nodes);
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# print Dumper($job);
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my $user = $job->{'user_id'};
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my $project;
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if ( @row ) {
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($db_id,
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$db_user_id,
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$db_job_id,
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$db_cluster_id,
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$db_start_time,
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$db_stop_time,
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$db_duration,
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$db_num_nodes) = @row;
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my $footprint = $job->{footprint};
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# print "$footprint->{mem_used}->{avg}, $footprint->{flops_any}->{avg}, $footprint->{mem_bw}->{avg}\n";
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$sth_update_job->execute(
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1,
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$footprint->{mem_used}->{avg},
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$footprint->{flops_any}->{avg},
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$footprint->{mem_bw}->{avg},
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$db_id
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);
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$jobcount++;
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if ( exists $user_lookup{$user}) {
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$project = $user_group{$user};
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$user = 'user_'.$user_lookup{$user};
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} else {
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print "$jobID NOT in DB!\n";
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die "$user not in lookup hash!\n";
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}
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if ( exists $project_lookup{$project}) {
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$project = 'project_'.$project_lookup{$project};
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} else {
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die "$project not in lookup hash!\n";
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}
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$job->{user_id} = $user;
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$job->{project_id} = $project;
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$jobmeta_json = encode_json $job;
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# print "$jobmeta_json\n";
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write_file("$basedir/$jobID/meta.json", $jobmeta_json);
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}
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closedir $dh or die "can't close directory: $!";
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$dbh->disconnect;
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print "$wrongjobcount of $jobcount need update\n";
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$dbh->disconnect;
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