cc-backend/internal/repository/job.go

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// Copyright (C) NHR@FAU, University Erlangen-Nuremberg.
// All rights reserved.
// Use of this source code is governed by a MIT-style
// license that can be found in the LICENSE file.
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package repository
import (
"database/sql"
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"encoding/json"
"errors"
"fmt"
"math"
"strconv"
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"sync"
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"time"
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"github.com/ClusterCockpit/cc-backend/internal/graph/model"
"github.com/ClusterCockpit/cc-backend/pkg/archive"
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"github.com/ClusterCockpit/cc-backend/pkg/log"
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"github.com/ClusterCockpit/cc-backend/pkg/lrucache"
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"github.com/ClusterCockpit/cc-backend/pkg/schema"
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sq "github.com/Masterminds/squirrel"
"github.com/jmoiron/sqlx"
)
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var (
jobRepoOnce sync.Once
jobRepoInstance *JobRepository
)
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type JobRepository struct {
DB *sqlx.DB
stmtCache *sq.StmtCache
cache *lrucache.Cache
driver string
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}
func GetJobRepository() *JobRepository {
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jobRepoOnce.Do(func() {
db := GetConnection()
jobRepoInstance = &JobRepository{
DB: db.DB,
driver: db.Driver,
stmtCache: sq.NewStmtCache(db.DB),
cache: lrucache.New(1024 * 1024),
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}
})
return jobRepoInstance
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}
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var jobColumns []string = []string{
"job.id", "job.job_id", "job.hpc_user", "job.project", "job.cluster", "job.subcluster", "job.start_time", "job.cluster_partition", "job.array_job_id",
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"job.num_nodes", "job.num_hwthreads", "job.num_acc", "job.exclusive", "job.monitoring_status", "job.smt", "job.job_state",
"job.duration", "job.walltime", "job.resources", "job.footprint", "job.energy",
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}
func scanJob(row interface{ Scan(...interface{}) error }) (*schema.Job, error) {
job := &schema.Job{}
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if err := row.Scan(
&job.ID, &job.JobID, &job.User, &job.Project, &job.Cluster, &job.SubCluster, &job.StartTimeUnix, &job.Partition, &job.ArrayJobId,
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&job.NumNodes, &job.NumHWThreads, &job.NumAcc, &job.Exclusive, &job.MonitoringStatus, &job.SMT, &job.State,
&job.Duration, &job.Walltime, &job.RawResources, &job.RawFootprint, &job.Energy); err != nil {
log.Warnf("Error while scanning rows (Job): %v", err)
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return nil, err
}
if err := json.Unmarshal(job.RawResources, &job.Resources); err != nil {
log.Warn("Error while unmarshaling raw resources json")
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return nil, err
}
job.RawResources = nil
if err := json.Unmarshal(job.RawFootprint, &job.Footprint); err != nil {
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log.Warnf("Error while unmarshaling raw footprint json: %v", err)
return nil, err
}
job.RawFootprint = nil
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// if err := json.Unmarshal(job.RawMetaData, &job.MetaData); err != nil {
// return nil, err
// }
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job.StartTime = time.Unix(job.StartTimeUnix, 0)
if job.Duration == 0 && job.State == schema.JobStateRunning {
job.Duration = int32(time.Since(job.StartTime).Seconds())
}
return job, nil
}
func (r *JobRepository) Optimize() error {
var err error
switch r.driver {
case "sqlite3":
if _, err = r.DB.Exec(`VACUUM`); err != nil {
return err
}
case "mysql":
log.Info("Optimize currently not supported for mysql driver")
}
return nil
}
func (r *JobRepository) Flush() error {
var err error
switch r.driver {
case "sqlite3":
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if _, err = r.DB.Exec(`DELETE FROM jobtag`); err != nil {
return err
}
if _, err = r.DB.Exec(`DELETE FROM tag`); err != nil {
return err
}
if _, err = r.DB.Exec(`DELETE FROM job`); err != nil {
return err
}
case "mysql":
if _, err = r.DB.Exec(`SET FOREIGN_KEY_CHECKS = 0`); err != nil {
return err
}
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if _, err = r.DB.Exec(`TRUNCATE TABLE jobtag`); err != nil {
return err
}
if _, err = r.DB.Exec(`TRUNCATE TABLE tag`); err != nil {
return err
}
if _, err = r.DB.Exec(`TRUNCATE TABLE job`); err != nil {
return err
}
if _, err = r.DB.Exec(`SET FOREIGN_KEY_CHECKS = 1`); err != nil {
return err
}
}
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return nil
}
func scanJobLink(row interface{ Scan(...interface{}) error }) (*model.JobLink, error) {
jobLink := &model.JobLink{}
if err := row.Scan(
&jobLink.ID, &jobLink.JobID); err != nil {
log.Warn("Error while scanning rows (jobLink)")
return nil, err
}
return jobLink, nil
}
func (r *JobRepository) FetchMetadata(job *schema.Job) (map[string]string, error) {
start := time.Now()
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cachekey := fmt.Sprintf("metadata:%d", job.ID)
if cached := r.cache.Get(cachekey, nil); cached != nil {
job.MetaData = cached.(map[string]string)
return job.MetaData, nil
}
if err := sq.Select("job.meta_data").From("job").Where("job.id = ?", job.ID).
RunWith(r.stmtCache).QueryRow().Scan(&job.RawMetaData); err != nil {
log.Warn("Error while scanning for job metadata")
return nil, err
}
if len(job.RawMetaData) == 0 {
return nil, nil
}
if err := json.Unmarshal(job.RawMetaData, &job.MetaData); err != nil {
log.Warn("Error while unmarshaling raw metadata json")
return nil, err
}
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r.cache.Put(cachekey, job.MetaData, len(job.RawMetaData), 24*time.Hour)
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log.Debugf("Timer FetchMetadata %s", time.Since(start))
return job.MetaData, nil
}
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func (r *JobRepository) UpdateMetadata(job *schema.Job, key, val string) (err error) {
cachekey := fmt.Sprintf("metadata:%d", job.ID)
r.cache.Del(cachekey)
if job.MetaData == nil {
if _, err = r.FetchMetadata(job); err != nil {
log.Warnf("Error while fetching metadata for job, DB ID '%v'", job.ID)
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return err
}
}
if job.MetaData != nil {
cpy := make(map[string]string, len(job.MetaData)+1)
for k, v := range job.MetaData {
cpy[k] = v
}
cpy[key] = val
job.MetaData = cpy
} else {
job.MetaData = map[string]string{key: val}
}
if job.RawMetaData, err = json.Marshal(job.MetaData); err != nil {
log.Warnf("Error while marshaling metadata for job, DB ID '%v'", job.ID)
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return err
}
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if _, err = sq.Update("job").
Set("meta_data", job.RawMetaData).
Where("job.id = ?", job.ID).
RunWith(r.stmtCache).Exec(); err != nil {
log.Warnf("Error while updating metadata for job, DB ID '%v'", job.ID)
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return err
}
r.cache.Put(cachekey, job.MetaData, len(job.RawMetaData), 24*time.Hour)
return archive.UpdateMetadata(job, job.MetaData)
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}
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func (r *JobRepository) FetchFootprint(job *schema.Job) (map[string]float64, error) {
start := time.Now()
cachekey := fmt.Sprintf("footprint:%d", job.ID)
if cached := r.cache.Get(cachekey, nil); cached != nil {
job.Footprint = cached.(map[string]float64)
return job.Footprint, nil
}
if err := sq.Select("job.footprint").From("job").Where("job.id = ?", job.ID).
RunWith(r.stmtCache).QueryRow().Scan(&job.RawFootprint); err != nil {
log.Warn("Error while scanning for job footprint")
return nil, err
}
if len(job.RawFootprint) == 0 {
return nil, nil
}
if err := json.Unmarshal(job.RawFootprint, &job.Footprint); err != nil {
log.Warn("Error while unmarshaling raw footprint json")
return nil, err
}
r.cache.Put(cachekey, job.Footprint, len(job.Footprint), 24*time.Hour)
log.Debugf("Timer FetchFootprint %s", time.Since(start))
return job.Footprint, nil
}
func (r *JobRepository) FetchEnergyFootprint(job *schema.Job) (map[string]float64, error) {
start := time.Now()
cachekey := fmt.Sprintf("energyFootprint:%d", job.ID)
if cached := r.cache.Get(cachekey, nil); cached != nil {
job.EnergyFootprint = cached.(map[string]float64)
return job.EnergyFootprint, nil
}
if err := sq.Select("job.energy_footprint").From("job").Where("job.id = ?", job.ID).
RunWith(r.stmtCache).QueryRow().Scan(&job.RawEnergyFootprint); err != nil {
log.Warn("Error while scanning for job energy_footprint")
return nil, err
}
if len(job.RawEnergyFootprint) == 0 {
return nil, nil
}
if err := json.Unmarshal(job.RawEnergyFootprint, &job.EnergyFootprint); err != nil {
log.Warn("Error while unmarshaling raw energy footprint json")
return nil, err
}
r.cache.Put(cachekey, job.EnergyFootprint, len(job.EnergyFootprint), 24*time.Hour)
log.Debugf("Timer FetchEnergyFootprint %s", time.Since(start))
return job.EnergyFootprint, nil
}
func (r *JobRepository) DeleteJobsBefore(startTime int64) (int, error) {
var cnt int
q := sq.Select("count(*)").From("job").Where("job.start_time < ?", startTime)
q.RunWith(r.DB).QueryRow().Scan(cnt)
qd := sq.Delete("job").Where("job.start_time < ?", startTime)
_, err := qd.RunWith(r.DB).Exec()
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if err != nil {
s, _, _ := qd.ToSql()
log.Errorf(" DeleteJobsBefore(%d) with %s: error %#v", startTime, s, err)
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} else {
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log.Debugf("DeleteJobsBefore(%d): Deleted %d jobs", startTime, cnt)
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}
return cnt, err
}
func (r *JobRepository) DeleteJobById(id int64) error {
qd := sq.Delete("job").Where("job.id = ?", id)
_, err := qd.RunWith(r.DB).Exec()
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if err != nil {
s, _, _ := qd.ToSql()
log.Errorf("DeleteJobById(%d) with %s : error %#v", id, s, err)
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} else {
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log.Debugf("DeleteJobById(%d): Success", id)
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}
return err
}
func (r *JobRepository) FindUserOrProjectOrJobname(user *schema.User, searchterm string) (jobid string, username string, project string, jobname string) {
if _, err := strconv.Atoi(searchterm); err == nil { // Return empty on successful conversion: parent method will redirect for integer jobId
return searchterm, "", "", ""
} else { // Has to have letters and logged-in user for other guesses
if user != nil {
// Find username in jobs (match)
uresult, _ := r.FindColumnValue(user, searchterm, "job", "user", "user", false)
if uresult != "" {
return "", uresult, "", ""
}
// Find username by name (like)
nresult, _ := r.FindColumnValue(user, searchterm, "hpc_user", "username", "name", true)
if nresult != "" {
return "", nresult, "", ""
}
// Find projectId in jobs (match)
presult, _ := r.FindColumnValue(user, searchterm, "job", "project", "project", false)
if presult != "" {
return "", "", presult, ""
}
}
// Return searchterm if no match before: Forward as jobname query to GQL in handleSearchbar function
return "", "", "", searchterm
}
}
var (
ErrNotFound = errors.New("no such jobname, project or user")
ErrForbidden = errors.New("not authorized")
)
func (r *JobRepository) FindColumnValue(user *schema.User, searchterm string, table string, selectColumn string, whereColumn string, isLike bool) (result string, err error) {
compareStr := " = ?"
query := searchterm
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if isLike {
compareStr = " LIKE ?"
query = "%" + searchterm + "%"
}
if user.HasAnyRole([]schema.Role{schema.RoleAdmin, schema.RoleSupport, schema.RoleManager}) {
theQuery := sq.Select(table+"."+selectColumn).Distinct().From(table).
Where(table+"."+whereColumn+compareStr, query)
// theSql, args, theErr := theQuery.ToSql()
// if theErr != nil {
// log.Warn("Error while converting query to sql")
// return "", err
// }
// log.Debugf("SQL query (FindColumnValue): `%s`, args: %#v", theSql, args)
err := theQuery.RunWith(r.stmtCache).QueryRow().Scan(&result)
if err != nil && err != sql.ErrNoRows {
return "", err
} else if err == nil {
return result, nil
}
return "", ErrNotFound
} else {
log.Infof("Non-Admin User %s : Requested Query '%s' on table '%s' : Forbidden", user.Name, query, table)
return "", ErrForbidden
}
}
func (r *JobRepository) FindColumnValues(user *schema.User, query string, table string, selectColumn string, whereColumn string) (results []string, err error) {
emptyResult := make([]string, 0)
if user.HasAnyRole([]schema.Role{schema.RoleAdmin, schema.RoleSupport, schema.RoleManager}) {
rows, err := sq.Select(table+"."+selectColumn).Distinct().From(table).
Where(table+"."+whereColumn+" LIKE ?", fmt.Sprint("%", query, "%")).
RunWith(r.stmtCache).Query()
if err != nil && err != sql.ErrNoRows {
return emptyResult, err
} else if err == nil {
for rows.Next() {
var result string
err := rows.Scan(&result)
if err != nil {
rows.Close()
log.Warnf("Error while scanning rows: %v", err)
return emptyResult, err
}
results = append(results, result)
}
return results, nil
}
return emptyResult, ErrNotFound
} else {
log.Infof("Non-Admin User %s : Requested Query '%s' on table '%s' : Forbidden", user.Name, query, table)
return emptyResult, ErrForbidden
}
}
func (r *JobRepository) Partitions(cluster string) ([]string, error) {
var err error
start := time.Now()
partitions := r.cache.Get("partitions:"+cluster, func() (interface{}, time.Duration, int) {
parts := []string{}
if err = r.DB.Select(&parts, `SELECT DISTINCT job.cluster_partition FROM job WHERE job.cluster = ?;`, cluster); err != nil {
return nil, 0, 1000
}
return parts, 1 * time.Hour, 1
})
if err != nil {
return nil, err
}
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log.Debugf("Timer Partitions %s", time.Since(start))
return partitions.([]string), nil
}
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// AllocatedNodes returns a map of all subclusters to a map of hostnames to the amount of jobs running on that host.
// Hosts with zero jobs running on them will not show up!
func (r *JobRepository) AllocatedNodes(cluster string) (map[string]map[string]int, error) {
start := time.Now()
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subclusters := make(map[string]map[string]int)
rows, err := sq.Select("resources", "subcluster").From("job").
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Where("job.job_state = 'running'").
Where("job.cluster = ?", cluster).
RunWith(r.stmtCache).Query()
if err != nil {
log.Error("Error while running query")
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return nil, err
}
var raw []byte
defer rows.Close()
for rows.Next() {
raw = raw[0:0]
var resources []*schema.Resource
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var subcluster string
if err := rows.Scan(&raw, &subcluster); err != nil {
log.Warn("Error while scanning rows")
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return nil, err
}
if err := json.Unmarshal(raw, &resources); err != nil {
log.Warn("Error while unmarshaling raw resources json")
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return nil, err
}
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hosts, ok := subclusters[subcluster]
if !ok {
hosts = make(map[string]int)
subclusters[subcluster] = hosts
}
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for _, resource := range resources {
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hosts[resource.Hostname] += 1
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}
}
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log.Debugf("Timer AllocatedNodes %s", time.Since(start))
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return subclusters, nil
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}
func (r *JobRepository) StopJobsExceedingWalltimeBy(seconds int) error {
start := time.Now()
res, err := sq.Update("job").
Set("monitoring_status", schema.MonitoringStatusArchivingFailed).
Set("duration", 0).
Set("job_state", schema.JobStateFailed).
Where("job.job_state = 'running'").
Where("job.walltime > 0").
Where(fmt.Sprintf("(%d - job.start_time) > (job.walltime + %d)", time.Now().Unix(), seconds)).
RunWith(r.DB).Exec()
if err != nil {
log.Warn("Error while stopping jobs exceeding walltime")
return err
}
rowsAffected, err := res.RowsAffected()
if err != nil {
log.Warn("Error while fetching affected rows after stopping due to exceeded walltime")
return err
}
if rowsAffected > 0 {
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log.Infof("%d jobs have been marked as failed due to running too long", rowsAffected)
}
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log.Debugf("Timer StopJobsExceedingWalltimeBy %s", time.Since(start))
return nil
}
func (r *JobRepository) FindRunningJobs(cluster string) ([]*schema.Job, error) {
query := sq.Select(jobColumns...).From("job").
Where(fmt.Sprintf("job.cluster = '%s'", cluster)).
Where("job.job_state = 'running'").
Where("job.duration > 600")
rows, err := query.RunWith(r.stmtCache).Query()
if err != nil {
log.Error("Error while running query")
return nil, err
}
jobs := make([]*schema.Job, 0, 50)
for rows.Next() {
job, err := scanJob(rows)
if err != nil {
rows.Close()
log.Warn("Error while scanning rows")
return nil, err
}
jobs = append(jobs, job)
}
log.Infof("Return job count %d", len(jobs))
return jobs, nil
}
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func (r *JobRepository) UpdateDuration() error {
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stmnt := sq.Update("job").
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Set("duration", sq.Expr("? - job.start_time", time.Now().Unix())).
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Where("job_state = 'running'")
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_, err := stmnt.RunWith(r.stmtCache).Exec()
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if err != nil {
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return err
}
return nil
}
func (r *JobRepository) FindJobsBetween(startTimeBegin int64, startTimeEnd int64) ([]*schema.Job, error) {
var query sq.SelectBuilder
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if startTimeBegin == startTimeEnd || startTimeBegin > startTimeEnd {
return nil, errors.New("startTimeBegin is equal or larger startTimeEnd")
}
if startTimeBegin == 0 {
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log.Infof("Find jobs before %d", startTimeEnd)
query = sq.Select(jobColumns...).From("job").Where(fmt.Sprintf(
"job.start_time < %d", startTimeEnd))
} else {
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log.Infof("Find jobs between %d and %d", startTimeBegin, startTimeEnd)
query = sq.Select(jobColumns...).From("job").Where(fmt.Sprintf(
"job.start_time BETWEEN %d AND %d", startTimeBegin, startTimeEnd))
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}
rows, err := query.RunWith(r.stmtCache).Query()
if err != nil {
log.Error("Error while running query")
return nil, err
}
jobs := make([]*schema.Job, 0, 50)
for rows.Next() {
job, err := scanJob(rows)
if err != nil {
rows.Close()
log.Warn("Error while scanning rows")
return nil, err
}
jobs = append(jobs, job)
}
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log.Infof("Return job count %d", len(jobs))
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return jobs, nil
}
func (r *JobRepository) UpdateMonitoringStatus(job int64, monitoringStatus int32) (err error) {
stmt := sq.Update("job").
Set("monitoring_status", monitoringStatus).
Where("job.id = ?", job)
_, err = stmt.RunWith(r.stmtCache).Exec()
return
}
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func (r *JobRepository) Execute(stmt sq.UpdateBuilder) error {
if _, err := stmt.RunWith(r.stmtCache).Exec(); err != nil {
return err
}
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return nil
}
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func (r *JobRepository) MarkArchived(
stmt sq.UpdateBuilder,
monitoringStatus int32,
) sq.UpdateBuilder {
return stmt.Set("monitoring_status", monitoringStatus)
}
func (r *JobRepository) UpdateEnergy(
stmt sq.UpdateBuilder,
jobMeta *schema.JobMeta,
) (sq.UpdateBuilder, error) {
/* Note: Only Called for Running Jobs during Intermediate Update or on Archiving */
sc, err := archive.GetSubCluster(jobMeta.Cluster, jobMeta.SubCluster)
if err != nil {
log.Errorf("cannot get subcluster: %s", err.Error())
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return stmt, err
}
energyFootprint := make(map[string]float64)
var totalEnergy float64
var energy float64
for _, fp := range sc.EnergyFootprint {
if i, err := archive.MetricIndex(sc.MetricConfig, fp); err == nil {
// Note: For DB data, calculate and save as kWh
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if sc.MetricConfig[i].Energy == "energy" { // this metric has energy as unit (Joules or Wh)
// FIXME: Needs sum as stats type
} else if sc.MetricConfig[i].Energy == "power" { // this metric has power as unit (Watt)
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// Energy: Power (in Watts) * Time (in Seconds)
// Unit: ( W * s ) / 3600 / 1000 = kWh ; Rounded to 2 nearest digits
energy = math.Round(((LoadJobStat(jobMeta, fp, "avg")*float64(jobMeta.Duration))/3600/1000)*100) / 100
}
} else {
log.Warnf("Error while collecting energy metric %s for job, DB ID '%v', return '0.0'", fp, jobMeta.ID)
}
energyFootprint[fp] = energy
totalEnergy += energy
}
var rawFootprint []byte
if rawFootprint, err = json.Marshal(energyFootprint); err != nil {
log.Warnf("Error while marshaling energy footprint for job INTO BYTES, DB ID '%v'", jobMeta.ID)
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return stmt, err
}
return stmt.Set("energy_footprint", string(rawFootprint)).Set("energy", (math.Round(totalEnergy*100) / 100)), nil
}
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func (r *JobRepository) UpdateFootprint(
stmt sq.UpdateBuilder,
jobMeta *schema.JobMeta,
) (sq.UpdateBuilder, error) {
/* Note: Only Called for Running Jobs during Intermediate Update or on Archiving */
sc, err := archive.GetSubCluster(jobMeta.Cluster, jobMeta.SubCluster)
if err != nil {
log.Errorf("cannot get subcluster: %s", err.Error())
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return stmt, err
}
footprint := make(map[string]float64)
for _, fp := range sc.Footprint {
var statType string
for _, gm := range archive.GlobalMetricList {
if gm.Name == fp {
statType = gm.Footprint
}
}
if statType != "avg" && statType != "min" && statType != "max" {
log.Warnf("unknown statType for footprint update: %s", statType)
return stmt, fmt.Errorf("unknown statType for footprint update: %s", statType)
}
if i, err := archive.MetricIndex(sc.MetricConfig, fp); err != nil {
statType = sc.MetricConfig[i].Footprint
}
name := fmt.Sprintf("%s_%s", fp, statType)
footprint[name] = LoadJobStat(jobMeta, fp, statType)
}
var rawFootprint []byte
if rawFootprint, err = json.Marshal(footprint); err != nil {
log.Warnf("Error while marshaling footprint for job INTO BYTES, DB ID '%v'", jobMeta.ID)
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return stmt, err
}
return stmt.Set("footprint", string(rawFootprint)), nil
}